molecular crystals

分子晶体
  • 文章类型: Journal Article
    利用有机晶体中的光诱导相变,特别是形状和结构在不同维度上的变化,为精确的时空控制提供了一条迷人的途径,这对于开发未来的智能设备至关重要。在我们的研究中,我们报道了一种由(E)-2-(3-苯基-亚芳基)丙二酸酯((E)-PADM)制成的新型光敏分子晶体。当暴露于365nm的紫外线(UV)光时,该化合物在液体溶液中经历E到Z的光异构化,在固体晶体中经历晶体到液相的转变。值得注意的是,与块状晶体相比,纳米晶体棒提高了它们的熔化速率和程度,表明微型化增强了光致熔化效应。我们的结果证明了一种通过光化学反应和相变将分子晶体快速驱动到液体中的简单方法。
    Harnessing the photoinduced phase transitions in organic crystals, especially the changes in shape and structure across various dimensions, offers a fascinating avenue for exact spatiotemporal control, which is crucial for developing future smart devices. In our study, we report a new photoactive molecular crystal made from (E)-2-(3-phenyl-allylidene)malonate ((E)-PADM). When exposed to ultraviolet (UV) light at 365 nm, this compound experiences an E-to-Z photoisomerization in liquid solution and a crystal-to-liquid phase transition in solid crystals. Remarkably, nanoscopic crystalline rods boost their melting rate and degree compared to bulk crystals, indicating that miniaturization enhances the photoinduced melting effect. Our results demonstrate a simple approach to rapidly drive molecular crystals into liquids via photochemical reactions and phase transitions.
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  • 文章类型: Journal Article
    CrystalAdaptronics,材料科学与工程交叉的新兴领域,专注于利用有机分子晶体的独特性质,在各种应用中实现前所未有的可操作性和可加工性水平。越来越多,有序堆叠的晶体材料被赋予了迷人的机械顺应性变化,以响应外部环境。了解如何为特定功能操作和定制这些晶体在追求具有可定制属性的先进材料方面变得至关重要。同时,有机分子晶体的可加工性在塑造其在实际应用中的效用方面起着关键作用。从生长方法到制造技术,精确加工这些晶体的能力为具有增强功能的工程材料开辟了新途径。这些晶体的加工方法增强了它们的通用性,允许它们集成到广泛的设备和技术中,进一步扩大晶体自适应电子的潜在应用。这篇综述旨在简要概述动态有机分子晶体研究中的当前景观,强调可操作性和可加工性的相互联系的主题。
    Crystal adaptronics, a burgeoning field at the intersection of materials science and engineering, focuses on harnessing the unique properties of organic molecular crystals to achieve unprecedented levels of maneuverability and processability in various applications. Increasingly, ordered stacks of crystalline materials are being endowed with fascinating mechanical compliance changes in response to external environments. Understanding how these crystals can be manipulated and tailored for specific functions has become paramount in the pursuit of advanced materials with customizable properties. Simultaneously, the processability of organic molecular crystals plays a pivotal role in shaping their utility in real-world applications. From growth methodologies to fabrication techniques, the ability to precisely machine these crystals opens new avenues for engineering materials with enhanced functionality. These processing methods enhance the versatility of organic crystals, allowing their integration into various devices and technologies, and further expanding the potential applications. This review aims to provide a concise overview of the current landscape in the study of dynamic organic molecular crystals, with an emphasis on the interconnected themes of operability and processability.
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  • 文章类型: Journal Article
    从它的概念来看,X射线晶体学提供了对结构的独特理解,材料的键合和电子状态,which,反过来,解锁检查晶体系统的性质和功能的手段。使用最先进的单晶X射线衍射,随着紫外-可见光谱和DFT计算,Zwolenik等人。[(2024)。IUCrJ,11,519-527]提供了对1,3-二乙酰基芘的结构-光学性质关系的全面研究,其方法越来越多地为非专业实验室所用。
    From its conception, X-ray crystallography has provided a unique understanding of the structure, bonding and electronic state of materials, which, in turn, unlocks a means of examining the properties and function of crystalline systems. Using state-of-the-art single-crystal X-ray diffraction, along with UV-Vis spectroscopy and DFT calculations, Zwolenik et al. [(2024). IUCrJ, 11, 519-527] have provided a comprehensive study of the structure-optical property relationship of 1,3-diacetylpyrene with methodologies that are increasingly accessible to non-specialist laboratories.
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  • 文章类型: Journal Article
    从单波长异常衍射X射线数据求解蛋白质的结构时,通过从异常散射子结构定相获得的初始相通常需要通过迭代电子密度修改来改善。在这份手稿中,提出了使用卷积神经网络(CNN)分割初始实验定相电子密度图。报告的结果表明,具有U网架构的CNN,在监督学习中,主要使用蛋白质数据库中的X射线数据生成的数千个电子密度图进行训练,可以提高电流密度的改性方法。
    When solving a structure of a protein from single-wavelength anomalous diffraction X-ray data, the initial phases obtained by phasing from an anomalously scattering substructure usually need to be improved by an iterated electron-density modification. In this manuscript, the use of convolutional neural networks (CNNs) for segmentation of the initial experimental phasing electron-density maps is proposed. The results reported demonstrate that a CNN with U-net architecture, trained on several thousands of electron-density maps generated mainly using X-ray data from the Protein Data Bank in a supervised learning, can improve current density-modification methods.
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  • 文章类型: Journal Article
    晶体学是确定晶体原子结构的典型方法。晶体学最常见的实现使用必须具有足够尺寸的单晶,通常数十微米或更大,取决于晶体结构的复杂性。晶体学中串行数据收集方法的出现,特别是对于时间分辨实验,为纳米晶体和晶体集合的结构确定开辟了新的途径。波动X射线散射是一种基于相关性的方法,用于从相同粒子的集合进行单粒子成像,但尚未应用于晶体结构测定。这里,提出了一种迭代算法,该算法可以从波动的X射线散射相关性中恢复晶体结构因子强度。通过从模拟的波动X射线散射相关性中恢复三个小分子晶体和蛋白质晶体的结构,证明了该算法的功能。这种方法可以促进在连续晶体学实验中从晶体中恢复结构因子强度,并放宽晶体学实验的样品要求。
    Crystallography is a quintessential method for determining the atomic structure of crystals. The most common implementation of crystallography uses single crystals that must be of sufficient size, typically tens of micrometres or larger, depending on the complexity of the crystal structure. The emergence of serial data-collection methods in crystallography, particularly for time-resolved experiments, opens up opportunities to develop new routes to structure determination for nanocrystals and ensembles of crystals. Fluctuation X-ray scattering is a correlation-based approach for single-particle imaging from ensembles of identical particles, but has yet to be applied to crystal structure determination. Here, an iterative algorithm is presented that recovers crystal structure-factor intensities from fluctuation X-ray scattering correlations. The capabilities of this algorithm are demonstrated by recovering the structure of three small-molecule crystals and a protein crystal from simulated fluctuation X-ray scattering correlations. This method could facilitate the recovery of structure-factor intensities from crystals in serial crystallography experiments and relax sample requirements for crystallography experiments.
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  • 文章类型: Journal Article
    已从其熔体中获得了1,3-二乙酰基芘的新多晶型物,并使用单晶X射线衍射对其进行了彻底表征,稳态紫外可见光谱和周期密度泛函理论计算。实验研究涵盖了90至390K的温度范围和大气压至4.08GPa的压力范围。根据我们先前提出的方法,在金刚石砧座单元中的最佳样品放置可确保单斜样品的80%以上的数据覆盖率高达0.8。高压晶体结构的无限制的Hirshfeld原子细化是成功的,并且观察到羰基氧原子的非谐波行为。与先前表征的多晶型物不同,2°AP-β的结构基于反向平行的2°AP分子的无限π堆叠。2°AP-β显示与π堆叠内的面间距离的变化直接相关的压色性和压氟性。分子间弱相互作用的重要性反映在C-H方向上的-55.8(57)MK-1的基本负热膨胀系数中。..O互动。
    A new polymorph of 1,3-diacetylpyrene has been obtained from its melt and thoroughly characterized using single-crystal X-ray diffraction, steady-state UV-Vis spectroscopy and periodic density functional theory calculations. Experimental studies covered the temperature range from 90 to 390 K and the pressure range from atmospheric to 4.08 GPa. Optimal sample placement in a diamond anvil cell according to our previously presented methodology ensured over 80% data coverage up to 0.8 Å for a monoclinic sample. Unrestrained Hirshfeld atom refinement of the high-pressure crystal structures was successful and anharmonic behavior of carbonyl oxygen atoms was observed. Unlike the previously characterized polymorph, the structure of 2°AP-β is based on infinite π-stacks of antiparallel 2°AP molecules. 2°AP-β displays piezochromism and piezofluorochromism which are directly related to the variation in interplanar distances within the π-stacking. The importance of weak intermolecular interactions is reflected in the substantial negative thermal expansion coefficient of -55.8 (57) MK-1 in the direction of C-H...O interactions.
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  • 文章类型: Journal Article
    响应互补刺激的结构有序的软材料容易通过交叉或组合效应控制其空间和时间形态结构配置,例如门控,反馈,形状记忆,或编程。在缺乏通用和稳健的机械性能设计和预测策略的情况下,目前,化学和晶体工程相结合的方法可以提供有用的指南,以识别确定其响应的大小和时间的效应物。这里,我们利用所谓的软分子间相互作用的能力,通过使用卤化来激发有机晶体的机械和光化学活性来激发机械顺应性。从(E)-1,4-二苯基丁-2-烯-1,4-二酮开始,其晶体是易碎和光敏的,我们使用双重和四重卤化来引入卤素键合的平面,这些平面成为分子滑动的界面,渲染材料的机械和光化学塑料。氟化使机械效应进一步多样化,四氟衍生物的晶体也是有弹性的,但也是运动的,显示罕见的光显着剂效应。
    Structurally ordered soft materials that respond to complementary stimuli are susceptible to control over their spatial and temporal morphostructural configurations by intersectional or combined effects such as gating, feedback, shape-memory, or programming. In the absence of general and robust design and prediction strategies for their mechanical properties, at present, combined chemical and crystal engineering approaches could provide useful guidelines to identify effectors that determine both the magnitude and time of their response. Here, we capitalize on the purported ability of soft intermolecular interactions to instigate mechanical compliance by using halogenation to elicit both mechanical and photochemical activity of organic crystals. Starting from (E)-1,4-diphenylbut-2-ene-1,4-dione, whose crystals are brittle and photoinert, we use double and quadruple halogenation to introduce halogen-bonded planes that become interfaces for molecular gliding, rendering the material mechanically and photochemically plastic. Fluorination diversifies the mechanical effects further, and crystals of the tetrafluoro derivative are not only elastic but also motile, displaying the rare photosalient effect.
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  • 文章类型: Journal Article
    由于不同的潜在结构机制,温度(“声子压力”)和辐射损伤(“缺陷压力”)引起的结构应变不一定相关。在这里,同步加速器实验可能会提供新的但尚未探索的机会。McMonagle等人最近的出版物。[(2024),ActaCryst.B80,13-18]是一个很好的例证。
    The structural strain induced by temperature (`phonon pressure\') and radiation damage (`defect pressure\') is not necessarily correlated because of different underlying structural mechanisms. Here synchrotron experiments may provide new and yet unexplored opportunities. A recent publication by McMonagle et al. [(2024), Acta Cryst. B80, 13-18] is an excellent illustration of this.
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  • 文章类型: Journal Article
    在寻找新的活性药物成分时,精确控制共晶的化学性质变得至关重要。这种化学过程中的一个关键步骤是质子在共晶共形成剂之间迁移形成盐,通常由经验ΔpKa规则预期。由于它在改变分子间距离和相互作用中的有效作用,压力为ΔpKa规则增加了新的维度。尽管如此,该变量几乎没有用于在这些系统中诱导质子转移反应。在我们的研究中,高压X射线衍射和拉曼光谱实验,由DFT计算支持,揭示了对4,4'-联吡啶(BIPY)和丙二酸(MA)共晶(BIPYMA)的质子化状态的修饰,允许共晶相转化为离子盐多晶型物。压缩时,中性BIPYMA和单质子化(BIPYHMA-)物种共存,最高可达3.1GPa,发生向P21/c对称结构的相变,由形成BIPYH22MA2-的双质子转移反应诱导。减压时,低压C2/c相在2.4GPa下恢复,导致0.7GPa滞后压力范围。这是关于多组分晶体中质子转移的几项研究之一,这些研究表明,即使是轻微的压力变化,不同电荷物种之间的相互转化也是多么容易受到影响。以及质子转移如何成为导致晶体对称性变化的触发因素。这些新数据,再加上以前关于共形成剂之间质子转移反应的报道,扩展了ΔpKa规则的适用性,该规则结合了诱导盐形成所需的压力。
    In the search for new active pharmaceutical ingredients, the precise control of the chemistry of cocrystals becomes essential. One crucial step within this chemistry is proton migration between cocrystal coformers to form a salt, usually anticipated by the empirical ΔpKa rule. Due to the effective role it plays in modifying intermolecular distances and interactions, pressure adds a new dimension to the ΔpKa rule. Still, this variable has been scarcely applied to induce proton-transfer reactions within these systems. In our study, high-pressure X-ray diffraction and Raman spectroscopy experiments, supported by DFT calculations, reveal modifications to the protonation states of the 4,4\'-bipyridine (BIPY) and malonic acid (MA) cocrystal (BIPYMA) that allow the conversion of the cocrystal phase into ionic salt polymorphs. On compression, neutral BIPYMA and monoprotonated (BIPYH+MA-) species coexist up to 3.1 GPa, where a phase transition to a structure of P21/c symmetry occurs, induced by a double proton-transfer reaction forming BIPYH22+MA2-. The low-pressure C2/c phase is recovered at 2.4 GPa on decompression, leading to a 0.7 GPa hysteresis pressure range. This is one of a few studies on proton transfer in multicomponent crystals that shows how susceptible the interconversion between differently charged species is to even slight pressure changes, and how the proton transfer can be a triggering factor leading to changes in the crystal symmetry. These new data, coupled with information from previous reports on proton-transfer reactions between coformers, extend the applicability of the ΔpKa rule incorporating the pressure required to induce salt formation.
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  • 文章类型: Journal Article
    强烈的同步加速器辐射与分子晶体的相互作用经常通过破坏键而改变晶体结构,产生碎片,因此,诱导障碍。这里,提出了辐射引起的晶格应变的二阶张量来表征结构对辐射的敏感性。定量估算是使用线性响应近似法从三种材料Hg(NO3)2(PPh3)2,Hg(CN)2(PPh3)2和BiPh3[PPh3=三苯基膦,P(C6H5)3;Ph=苯基,C6H5],并与相应的热膨胀率进行比较。相关的特征值和特征向量表明两个张量并不相同,因此可以探测真正不同的结构响应。辐射扩展的张量可衡量晶体结构对辐射损伤的敏感性。
    The interaction of intense synchrotron radiation with molecular crystals frequently modifies the crystal structure by breaking bonds, producing fragments and, hence, inducing disorder. Here, a second-rank tensor of radiation-induced lattice strain is proposed to characterize the structural susceptibility to radiation. Quantitative estimates are derived using a linear response approximation from experimental data collected on three materials Hg(NO3)2(PPh3)2, Hg(CN)2(PPh3)2 and BiPh3 [PPh3 = triphenylphosphine, P(C6H5)3; Ph = phenyl, C6H5], and are compared with the corresponding thermal expansivities. The associated eigenvalues and eigenvectors show that the two tensors are not the same and therefore probe truly different structural responses. The tensor of radiative expansion serves as a measure of the susceptibility of crystal structures to radiation damage.
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