malaria parasite

疟原虫
  • 文章类型: Editorial
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  • 文章类型: Journal Article
    疟疾仍然是全球人类最危险的媒介传播传染病之一。性配子体代表疟疾寄生虫从脊椎动物传播到按蚊宿主的唯一阶段。预防疟疾传播的最有效方法是解决性发育过程,也就是说,配子细胞生成和配子生成。因此,这篇综述将全面涵盖围绕传播阶段的基因表达调控方面的进展,包括表观遗传,转录,和转录后控制。
    Malaria remains one of the most perilous vector-borne infectious diseases for humans globally. Sexual gametocyte represents the exclusive stage at which malaria parasites are transmitted from the vertebrate to the Anopheles host. The feasible and effective approach to prevent malaria transmission is by addressing the sexual developmental processes, that is, gametocytogenesis and gametogenesis. Thus, this review will comprehensively cover advances in the regulation of gene expression surrounding the transmissible stages, including epigenetic, transcriptional, and post-transcriptional control.
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  • 文章类型: Journal Article
    疟疾仍然是非洲社会经济发展的主要障碍,它的死亡率超过90%。许多机器学习模型的预测能力--如多元线性回归(MLR)、人工神经网络(ANN),自适应神经模糊推理系统(ANFISs)和随机森林分类器在这项研究中使用2207名患者的数据进行了调查。数据集从32个标准样本的初始数据集减少到15个。评估措施,如均方根误差(RMSE),均方误差(MSE),决定系数(R2),并使用调整后的相关系数R。ANFIS,随机森林,MLR,和ANN是其中的模型。培训后,ANN的表现优于ANFIS(97%),MLR(92%),和随机森林(68%),R(99%)和R2(99%)最大,分别。测试阶段证实了人工神经网络的优越性。本文还提供了一种统计预测表,该统计预测表具有很少的误差和出色的MLR模型准确性。当使用随机森林评估模型时,后者显示出最少的结果,从而扩大了建模技术,并为疟疾的预测和医疗保健决策提供了重要的见解。使用机器学习模型进行精确有效的疾病预测的结果增加了知识的扩展。协助医疗保健系统做出更好的决策并更有效地分配资源。
    Malaria continues to be a major barrier to socioeconomic development in Africa, where its death rate is over 90%. The predictive power of many machine learning models-such as multi-linear regression (MLR), artificial neural networks (ANN), adaptive neuro-fuzzy inference systems (ANFISs) and Random Forest classifier-is investigated in this study using data from 2207 patients. The dataset was reduced from the initial dataset of thirty-two criteria samples to fifteen. Assessment measures such as the root mean square error (RMSE), mean square error (MSE), coefficient of determination (R2), and adjusted correlation coefficient R were used. ANFIS, Random Forest, MLR, and ANN are among the models. After training, ANN outperforms ANFIS (97%), MLR (92%), and Random Forest (68%) with the greatest R (99%) and R2 (99%), respectively. The testing stage confirms the superiority of ANN. The paper also presents a statistical forecasting sheet with few errors and excellent accuracy for MLR models. When the models are assessed with Random Forest, the latter shows the least results, thus broadening the modeling techniques and offering significant insights into the prediction of malaria and healthcare decision making. The outcomes of using machine learning models for precise and efficient illness prediction add to an expanding body of knowledge, assisting healthcare systems in making better decisions and allocating resources more effectively.
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  • 文章类型: Journal Article
    疟原虫物种适应具有多种表型的复杂生命周期,以在人类和蚊子的各种细胞类型中生存。在疟原虫物种中,寄生虫发育阶段的阶段特异性基因表达受到严格控制;然而,潜在的机制还有待探索。需要更好地表征疟疾寄生虫每个阶段的基因组组织和基因表达。最近的研究表明,组蛋白的表观遗传修饰在染色质可塑性中起着至关重要的作用。像其他真核生物一样,疟原虫物种N端尾部修饰形成了独特的组蛋白代码,“为组蛋白阅读器蛋白创建对接位点,包括基因激活/抑制复合物,调节基因表达。新的研究发现揭示了组蛋白核心/球状结构域区域的各种非常规表观遗传变化,这可能有助于疟原虫不同发育阶段的染色质组织。疟原虫在进化过程中丢失了许多转录因子,并且提出局部染色质结构的性质基本上调节了阶段特异性基因的表达。这篇综述重点介绍了非常规组蛋白球形结构域表观遗传修饰的最新发现及其在疟疾寄生虫各个发育阶段中调节染色质结构动力学的功能。
    Plasmodium species adapt a complex lifecycle with multiple phenotypes to survive inside various cell types of humans and mosquitoes. Stage-specific gene expression in the developmental stages of parasites is tightly controlled in Plasmodium species; however, the underlying mechanisms have yet to be explored. Genome organization and gene expression for each stage of the malaria parasite need to be better characterized. Recent studies indicated that epigenetic modifications of histone proteins play a vital role in chromatin plasticity. Like other eukaryotes, Plasmodium species N-terminal tail modifications form a distinct \"histone code,\" which creates the docking sites for histone reader proteins, including gene activator/repressor complexes, to regulate gene expression. The emerging research findings shed light on various unconventional epigenetic changes in histone proteins\' core/globular domain regions, which might contribute to the chromatin organization in different developmental stages of the malaria parasite. The malaria parasite lost many transcription factors during evolution, and it is proposed that the nature of local chromatin structure essentially regulates the stage-specific gene expression. This review highlights recent discoveries of unconventional histone globular domain epigenetic modifications and their functions in regulating chromatin structure dynamics in various developmental stages of malaria parasites.
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  • 文章类型: Journal Article
    稀薄的血液涂片的注释图像数据集的稀缺性使得疟原虫物种之间的专家级区分具有挑战性。这里,我们的目的是建立一种深度学习算法,用于在薄血涂片中识别和分类疟疾寄生虫,并评估其性能和临床前景。
    您只看一次v7被用作训练人工智能算法模型的骨干网络。训练,验证,随机选择每个疟疾寄生虫类别的测试集。对12546例疟疾寄生虫的不同感染阶段的12708例薄血涂片图像进行了综合分析,包括恶性疟原虫,间日疟原虫,疟疾P,POvale,Pknowlesi,和食蟹猴。从380名诊断为疟疾的患者获得外周血样本。此外,来自被诊断为疟疾的猴子的血液样本被用于分析食蟹猴。通过各种评估指标评估检测疟原虫感染的血细胞的准确性。
    识别1116种疟疾寄生虫的总时间为13秒,测试集中每个寄生虫的平均分析时间为0.01秒。平均准确率为0.902,感染红细胞的召回率和准确率分别为96.0%和94.9%,分别。敏感性和特异性超过96.8%和99.3%,接收器工作特性曲线下的面积>0.999。对于滋养体和裂殖体,观察到最高的灵敏度(97.8%)和特异性(99.8%)。
    该算法可以帮助促进疟疾寄生虫的临床和形态检查。
    UNASSIGNED: Scarcity of annotated image data sets of thin blood smears makes expert-level differentiation among Plasmodium species challenging. Here, we aimed to establish a deep learning algorithm for identifying and classifying malaria parasites in thin blood smears and evaluate its performance and clinical prospect.
    UNASSIGNED: You Only Look Once v7 was used as the backbone network for training the artificial intelligence algorithm model. The training, validation, and test sets for each malaria parasite category were randomly selected. A comprehensive analysis was performed on 12 708 thin blood smear images of various infective stages of 12 546 malaria parasites, including P falciparum, P vivax, P malariae, P ovale, P knowlesi, and P cynomolgi. Peripheral blood samples were obtained from 380 patients diagnosed with malaria. Additionally, blood samples from monkeys diagnosed with malaria were used to analyze P cynomolgi. The accuracy for detecting Plasmodium-infected blood cells was assessed through various evaluation metrics.
    UNASSIGNED: The total time to identify 1116 malaria parasites was 13 seconds, with an average analysis time of 0.01 seconds for each parasite in the test set. The average precision was 0.902, with a recall and precision of infected erythrocytes of 96.0% and 94.9%, respectively. Sensitivity and specificity exceeded 96.8% and 99.3%, with an area under the receiver operating characteristic curve >0.999. The highest sensitivity (97.8%) and specificity (99.8%) were observed for trophozoites and merozoites.
    UNASSIGNED: The algorithm can help facilitate the clinical and morphologic examination of malaria parasites.
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  • 文章类型: Journal Article
    Romanowsky染色是19世纪末和20世纪初诊断血液学和细胞病理学的重要方法学突破;几十年来,它促进了生物学家的工作,血液学家和病理学家研究血细胞。尽管研究了一个多世纪的罗曼诺夫斯基染色,没有发表系统评价来解释产生“Romanowsky效应”或“Romanowsky-Giemsa效应”(RGE)的化学过程,即,由于天蓝色染料与曙红的相互作用而引起的紫色着色,而不仅仅是由于它们同时存在。我们的评论是试图在化学家和生物医学科学家之间架起桥梁,并总结有关亚甲基蓝(MB)去甲基化以及通过光和酶系统以及微生物将MB还原和分解为更简单的化合物的可用数据。要做到这一点,我们分析了在酸和碱的存在下以及由于光的作用而导致的歧化的MB去甲基化机制的现代数据。我们还解释了为什么RGE只在天蓝色B时发生,或者在较小程度上,通过应用实验和计算的物理化学参数,包括染料-DNA结合常数和这些配体分子中的电子密度分布,可以提供azureA。最后,我们讨论了通过修饰先前已知的染料来获得Romanowsky染料新品种的现代技术。我们希望我们的关键文献研究将帮助科学家更好地了解这种染料对细胞染色的化学和物理化学过程以及机制。
    Romanowsky staining was an important methodological breakthrough in diagnostic hematology and cytopathology during the late 19th and early 20th centuries; it has facilitated for decades the work of biologists, hematologists and pathologists working with blood cells. Despite more than a century of studying Romanowsky staining, no systematic review has been published that explains the chemical processes that produce the \"Romanowsky effect\" or \"Romanowsky-Giemsa effect\" (RGE), i.e., a purple coloration arising from the interaction of an azure dye with eosin and not due merely to their simultaneous presence. Our review is an attempt to build a bridge between chemists and biomedical scientists and to summarize the available data on methylene blue (MB) demethylation as well as the related reduction and decomposition of MB to simpler compounds by both light and enzyme systems and microorganisms. To do this, we analyze modern data on the mechanisms of MB demethylation both in the presence of acids and bases and by disproportionation due to the action of light. We also offer an explanation for why the RGE occurs only when azure B, or to a lesser extent, azure A is present by applying experimental and calculated physicochemical parameters including dye-DNA binding constants and electron density distributions in the molecules of these ligands. Finally, we discuss modern techniques for obtaining new varieties of Romanowsky dyes by modifying previously known ones. We hope that our critical literature study will help scientists understand better the chemical and physicochemical processes and mechanisms of cell staining with such dyes.
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  • 文章类型: Journal Article
    人类和野生动物的病原体种类繁多,包括疟原虫恶性疟原虫,依靠多基因家族来编码抗原变异。因此,尽管在高传播环境下的当地人群中具有高免疫力,但仍观察到高(无症状)患病率。“菌株”和编码这种变异的基因的巨大多样性挑战了已建立的模型在此类传染病种群动态中的应用。已经制定了基于代理的模型,以解决关于应变共存和结构的理论,但是它们的复杂性会限制对人口动态的洞察。受恶性疟原虫疟疾的驱使,我们以连续时间的结构化易感-感染-易感人群模型的形式开发了另一种公式,个人不仅按年龄分类,作为标准,而且由于寄生虫的多样性,它们已经暴露并保留在其特定的免疫记忆中。我们分析了该偏微分方程系统的种群动力学和分岔结构,显示替代稳态的存在以及与透射强度相关的临界点。我们将关键过渡归因于寄生虫遗传多样性和感染力之间的正反馈。吸引盆地表明,干预必须大大减少多样性,以防止反弹到高感染水平。结果强调了在超多样化流行病学系统的种群动态中明确考虑病原体多样性和相关的特异性免疫记忆的重要性。在具有超多样化特征空间的生态竞争系统的更一般背景下讨论了此陈述。
    A hyperdiverse class of pathogens of humans and wildlife, including the malaria parasite Plasmodium falciparum, relies on multigene families to encode antigenic variation. As a result, high (asymptomatic) prevalence is observed despite high immunity in local populations under high-transmission settings. The vast diversity of \"strains\" and genes encoding this variation challenges the application of established models for the population dynamics of such infectious diseases. Agent-based models have been formulated to address theory on strain coexistence and structure, but their complexity can limit application to gain insights into population dynamics. Motivated by P. falciparum malaria, we develop an alternative formulation in the form of a structured susceptible-infected-susceptible population model in continuous time, where individuals are classified not only by age, as is standard, but also by the diversity of parasites they have been exposed to and retain in their specific immune memory. We analyze the population dynamics and bifurcation structure of this system of partial-differential equations, showing the existence of alternative steady states and an associated tipping point with transmission intensity. We attribute the critical transition to the positive feedback between parasite genetic diversity and force of infection. Basins of attraction show that intervention must drastically reduce diversity to prevent a rebound to high infection levels. Results emphasize the importance of explicitly considering pathogen diversity and associated specific immune memory in the population dynamics of hyperdiverse epidemiological systems. This statement is discussed in a more general context for ecological competition systems with hyperdiverse trait spaces.
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  • 文章类型: Journal Article
    疟疾仍然是一种毁灭性的疾病,由于目前的措施无法控制其传输,需要新的干预措施。长期以来作为潜在干预靶点的蛋白质家族是水通道蛋白,它们是促进水和其他溶质跨膜运动的通道。我们确定了疟疾寄生虫中的水通道蛋白,并证明了它对于完成蚊子媒介中疟原虫的发育很重要。人寄生虫恶性疟原虫和啮齿动物寄生虫伯氏疟原虫中AQP2的破坏阻止了在蚊子内脏上建立的卵囊内的子孢子产生,极大地限制了唾液腺的寄生虫感染和向新宿主的传播。伯氏疟原虫AQP2的体内表位标记,结合免疫荧光分析,揭示了该蛋白质位于配子细胞细胞质中发现的囊泡样细胞器中,ookinetes,和子孢子。这些细胞器的数量在各个寄生虫和生命周期阶段之间有所不同,这表明它们可能是动态内膜系统的一部分。系统发育分析证实,AQP2是疟疾和密切相关的寄生虫所特有的,与细胞内水通道蛋白最相似。结构预测分析确定了几个不寻常的特征,包括一个大的附属胞外环和一个精氨酸到苯丙氨酸取代的选择性过滤器主要决定孔功能,已知水通道蛋白中的一个独特特征。这与AQP2对疟疾传播的重要性一起表明,AQP2可能是抗疟干预措施的有效目标。
    Malaria remains a devastating disease and, with current measures failing to control its transmission, there is a need for novel interventions. A family of proteins that have long been pursued as potential intervention targets are aquaporins, which are channels facilitating the movement of water and other solutes across membranes. We identify an aquaporin in malaria parasites and demonstrate that it is important for completion of Plasmodium development in the mosquito vector. Disruption of AQP2 in the human parasite Plasmodium falciparum and the rodent parasite Plasmodium berghei blocks sporozoite production inside oocysts established on mosquito midguts, greatly limiting parasite infection of salivary glands and transmission to a new host. In vivo epitope tagging of AQP2 in P. berghei, combined with immunofluorescence assays, reveals that the protein is localized in vesicle-like organelles found in the cytoplasm of gametocytes, ookinetes, and sporozoites. The number of these organelles varies between individual parasites and lifecycle stages suggesting that they are likely part of a dynamic endomembrane system. Phylogenetic analysis confirms that AQP2 is unique to malaria and closely related parasites and most closely resembles intracellular aquaporins. Structure prediction analyses identify several unusual features, including a large accessory extracellular loop and an arginine-to-phenylalanine substitution in the selectivity filter principally determining pore function, a unique feature among known aquaporins. This in conjunction with the importance of AQP2 for malaria transmission suggests that AQP2 may be a fruitful target of antimalarial interventions.
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  • 文章类型: Journal Article
    人类疟原虫恶性疟原虫抑制编码AP2-G的基因的转录,是生殖细胞分化的主要调节因子,通过组蛋白H3赖氨酸9三甲基化(H3K9me3)后的异染色质缩合。尽管H3K9me3标记的异染色质通常是组成型的,其建立取决于裂殖酵母着丝粒中的RNA干扰(RNAi)途径,疟疾寄生虫缺乏RNAi必需的分子成员。我们开发了一种策略来评估引入恶性疟原虫的人工染色体上的异染色质建立。我们显示AP2-G启动子中的特定DNA序列能够诱导从头H3K9me3核小体沉积。此外,我们还发现AP2-G启动子含有维持抑制记忆所需的独特元件。因此,我们推测疟原虫在进化上获得了一个序列依赖的非组成型建立系统,即兼性,H3K9me3标记的异染色质。
    The human malaria parasite Plasmodium falciparum represses transcription of the gene encoding AP2-G, which is the master regulator of germ cell differentiation, via heterochromatin condensation following histone H3 lysine 9 trimethylation (H3K9me3). Although H3K9me3-marked heterochromatin is typically constitutive and its establishment depends on the RNA interference (RNAi) pathway in fission yeast centromeres, malaria parasites lack molecular members essential for RNAi. We developed a strategy to assess heterochromatin establishment on artificial chromosomes introduced into P. falciparum. We show that a particular DNA sequence in the AP2-G promoter is able to induce de novo H3K9me3 nucleosome deposition. In addition, we also found that the AP2-G promoter contains a distinct element required in maintenance of the repression memory. Thus, we speculate that malaria parasites have evolutionarily acquired a sequence-dependent establishment system of non-constitutive, i.e. facultative, H3K9me3-marked heterochromatin.
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  • 文章类型: Journal Article
    作为药物开发的潜在技术,绿色纳米技术最近引起了很多关注。在本研究中,使用Sargassumtenerrimum合成银纳米颗粒,海洋海藻粗提物(Ag-ST),并在体外和体内模型中评估了抗疟活性。结果表明,Ag-ST纳米颗粒对恶性疟原虫和伯氏疟原虫的IC50值分别为7.71±0.39µg/ml和23.93±2.27µg/ml。这些纳米颗粒还显示出较低的溶血活性,表明它们可能用于治疗。Further,使用P.berghei感染的C57BL/6小鼠进行4天抑制,治疗性和预防性测定,注意到Ag-ST纳米颗粒显着降低了寄生虫血症,并且在生化和血液学参数中没有观察到毒性作用。进一步了解其可能的毒性作用,进行了体外和体内遗传毒理学研究,结果表明这些纳米颗粒本质上是非遗传毒性的。Ag-ST可能的抗疟活性可能是由于生物活性植物化学物质和银离子的存在。此外,植物化学物质阻止了导致低遗传毒性的离子的非特异性释放。一起,生物功效和毒理学结果表明,绿色合成的银纳米颗粒(Ag-ST)可能是治疗应用的尖端替代品.
    Green nanotechnology has recently attracted a lot of attention as a potential technique for drug development. In the present study, silver nanoparticles were synthesised by using Sargassum tenerrimum, a marine seaweed crude extract (Ag-ST), and evaluated for antimalarial activity in both in vitro and in vivo models. The results showed that Ag-ST nanoparticles exhibited good antiplasmodial activity with IC50 values 7.71±0.39 µg/ml and 23.93±2.27 µg/ml against P. falciparum and P. berghei respectively. These nanoparticles also showed less haemolysis activity suggesting their possible use in therapeutics. Further, P. berghei infected C57BL/6 mice were used for the four-day suppressive, curative and prophylactic assays where it was noticed that the Ag-ST nanoparticles significantly reduced the parasitaemia and there were no toxic effects observed in the biochemical and haematological parameters. Further to understand its possible toxic effects, both in vitro and in vivo genotoxicological studies were performed which revealed that these nanoparticles are non-genotoxic in nature. The possible antimalarial activity of Ag-ST may be due to the presence of bioactive phytochemicals and silver ions. Moreover, the phytochemicals prevent the nonspecific release of ions responsible for low genotoxicity. Together, the bio-efficacy and toxicology outcomes demonstrated that the green synthesized silver nanoparticles (Ag-ST) could be a cutting-edge alternative for therapeutic applications.
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