macrocycle

大环
  • 文章类型: Journal Article
    农药等复杂分子的荧光传感器因其操作简单,高灵敏度和选择性,和原位检测。在这项工作中,基于咪唑鎓修饰的双氰基二苯乙烯大环(IBM)制备了一种新型的农药荧光传感器。IBM在28种客人中以高传感选择性感知星光后,表现出从深蓝绿色到亮蓝色的明显“开启”荧光变化。检测极限低至0.011μM,这是文献中最低的。基于多个氢键的分子相互作用,证实了starane位于IBM的空腔中,π-π堆积和疏水相互作用。应用实验表明,Starane在试纸上检测良好,选择性好,在水样中定量检测,这意味着IBM在真实环境和日常生活中感知starane方面具有良好的实时和原位应用潜力。
    Fluorescence sensors for complicated molecules such as pesticides were paid much attention lately due to the merits of simple operation, high sensitivity and selectivity, and in-situ detection. In this work, a novel fluorescent sensor for pesticide starane was prepared based on imidazolium-decorated bis-cyanostilbene macrocycle (IBM). IBM exhibited the obvious \"turn-on\" fluorescence change from dark blue-green to bright blue after sensing starane with the high sensing selectivity among 28 kinds of guests. The detecting limitation was as low as 0.011 μM, which was the lowest one in literatures. The sensing mechanism was confirmed as that starane was located in cavity of IBM based on the molecular interaction of multiple hydrogen bonds, π-π stacking and hydrophobic interaction. The application experiments suggested that starane was examined well on test paper with good selectivity and was quantitatively detected in water samples, implying the good real-time and in-situ application potential for IBM on sensing starane in real environment and daily life.
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  • 文章类型: Journal Article
    化学拓扑为制备具有天然结构和完整功能的治疗性蛋白质生物缀合物提供了独特的维度。然而拓扑的影响仍然难以捉摸。在这里,设计,合成,和三种拓扑结构中治疗性蛋白质生物缀合物的表征(即,tadpole,大环,和八字),已报告。选择干扰素α2b(IFN)和白蛋白结合结构域(ABD)作为用于生物缀合和概念验证的模型蛋白。这些拓扑同工型的生物合成通过使用SpyTag-SpyCatcher化学和/或分裂内含肽介导的连接在细胞中的直接表达来实现拓扑多样化。用LC-MS的组合技术证明了相应的拓扑结构,SDS-PAGE,和受控的蛋白水解消化。虽然这些拓扑同工型的性质在大多数情况下是相似的,八字生物结合物,f8-IFN-ABD,表现出最佳的热稳定性和抗聚集特性以及延长的半衰期和增强的肿瘤保留相对于t形对照,tadp-IFN-ABD,和大环控制,c-IFN-ABD,展示了相当大的拓扑效应。这项工作扩展了蛋白质的拓扑多样性,并证明了利用化学拓扑来实现蛋白质疗法中多功能整合之外的功能益处的潜在优势。
    Chemical topology provides a unique dimension for making therapeutic protein bioconjugates with native structure and intact function, yet the effects of topology remain elusive. Herein, the design, synthesis, and characterization of therapeutic protein bioconjugates in three topologies (i.e., tadpole, macrocycle, and figure-of-eight), are reported. The interferon α2b (IFN) and albumin binding domain (ABD) are selected as the model proteins for bioconjugation and proof-of-concept. The biosynthesis of these topological isoforms is accomplished via direct expression in cells using SpyTag-SpyCatcher chemistry and/or split-intein-mediated ligation for topology diversification. The corresponding topologies are proven with combined techniques of LC-MS, SDS-PAGE, and controlled proteolytic digestion. While the properties of these topological isoforms are similar in most cases, the figure-of-eight-shaped bioconjugate, f8-IFN-ABD, exhibits the best thermal stability and anti-aggregation properties along with prolonged half-life and enhanced tumor retention relative to the tadpole-shaped control, tadp-IFN-ABD, and the macrocyclic control, c-IFN-ABD, showcasing considerable topological effects. The work expands the topological diversity of proteins and demonstrates the potential advantages of leveraging chemical topology for functional benefits beyond multi-function integration in protein therapeutics.
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  • 文章类型: Journal Article
    具有烯酰胺官能团的大环tomonolide(1)和线性tomonolide醛(2)是来自具有肽-聚酮骨架的海洋蓝细菌的新的相互转化的天然产物,代表阿拉克霉素和棕榈树酯或laingolides的杂种。通过NMR和质谱确定平面结构。使用基于J的构型分析确定了富含立体构型的apratoxin样聚酮化合物部分的相对构型。通过氨基酸单元的手性分析和计算方法确定了肿瘤内酯(1)的绝对构型,其次是NMR化学位移和ECD光谱预测,指示聚酮化合物部分的全R构型,如在palmyrolideA中,与apratoxins中的all-S构型相反。针对一组168个GPCR靶标的功能筛选显示,肿瘤内酯(1)是TACR2的选择性拮抗剂,IC50为7.0μM,与结合亲和力密切相关。分子对接研究建立了结合模式,并合理化了TACR2相对于TACR1和TACR3的选择性。在治疗HCT116结直肠癌细胞后的RNA测序显示肺纤维化特发性信号通路和胰岛素分泌信号通路在20μM的激活,表明其调节这些途径的潜力。
    The macrocyclic tumonolide (1) with enamide functionality and the linear tumonolide aldehyde (2) are new interconverting natural products from a marine cyanobacterium with a peptide-polyketide skeleton, representing a hybrid of apratoxins and palmyrolides or laingolides. The planar structures were established by NMR and mass spectrometry. The relative configuration of the stereogenically-rich apratoxin-like polyketide portion was determined using J-based configuration analysis. The absolute configuration of tumonolide (1) was determined by chiral analysis of the amino acid units and computational methods, followed by NMR chemical shift and ECD spectrum prediction, indicating all-R configuration for the polyketide portion, as in palmyrolide A and contrary to the all-S configuration in apratoxins. Functional screening against a panel of 168 GPCR targets revealed tumonolide (1) as a selective antagonist of TACR2 with an IC50 of 7.0 μM, closely correlating with binding affinity. Molecular docking studies established the binding mode and rationalized the selectivity for TACR2 over TACR1 and TACR3. RNA sequencing upon treatment of HCT116 colorectal cancer cells demonstrated activation of the pulmonary fibrosis idiopathic signaling pathway and the insulin secretion signaling pathway at 20 μM, indicating its potential to modulate these pathways.
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  • 文章类型: Journal Article
    作为一种新型的非对称大环化合物的合成方法,通过将末端炔烃插入大环框架的惰性C(亚甲基)-C(芳基)键,我们在此开发了杯[4]芳烃的合成后修饰。在这个转变中,C-iridated杯[4]芳烃,通过母体杯[4]芳烃的C-H键活化容易合成,经历C(亚甲基)-C(芳基)键裂解,然后插入炔以提供环膨胀的杯[4]芳烃络合物。从所得络合物中除去铱金属容易通过简单的酸处理来实现。开发的顺序方法提供了新颖的不对称,单官能化大环化合物通过3个步骤从母体杯[4]芳烃在良好的收率。通过X射线单晶分析评估了炔烃插入的大环的独特不对称结构。在理论计算的基础上,我们提出了一种反应机理,该机理涉及通过δ碳消除环扩大过程中不常见的C-C键裂解步骤。
    As a novel synthetic method for unsymmetrical macrocycles, we herein developed a post-synthetic modification of calix[4]arenes by insertion of a terminal alkyne into an inert C(methylene)-C(aryl) bond of the macrocyclic framework. In this transformation, C-iridated calix[4]arenes, readily synthesized through C-H bond activation of the parent calix[4]arene, undergoes C(methylene)-C(aryl) bond cleavage followed by insertion of an alkyne to provide a ring-expanded calix[4]arene complex. Removal of the iridium metal from the resulting complex was readily accomplished by a simple treatment with an acid. The developed sequential method affords novel unsymmetrical, monofunctionalized macrocyclic compounds via 3 steps from the parent calix[4]arene in good yield. The unique unsymmetrical structures of the alkyne-inserted macrocycles were evaluated by X-ray single crystal analyses. On the basis of theoretical calculations, we propose a reaction mechanism involving an uncommon C-C bond cleavage step through δ-carbon elimination for the ring enlargement process.
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  • 文章类型: Journal Article
    机械互锁的分子,比如轮烷,在超分子化学中引起了极大的关注。尽管在轮烷合成中已经对各种大环进行了彻底的探索,金属-有机大环化合物的研究相对不足。铝分子环,它们的内腔和许多结合位点,为构建轮烷提供了一个有希望的选择。这里,我们引入了一种利用Al8分子环的创新的“环-供体··轴-受体”基序,实现分子的逐步组装,配合物,和聚合物通过定制的配位化学。这种新颖的方法不仅可以应用于基于大环的系统,例如catenanes,还可以逐步增强特定的功能。
    Mechanically interlocked molecules, such as rotaxanes, have drawn significant attention within supramolecular chemistry. Although a variety of macrocycles have been thoroughly explored in rotaxane synthesis, metal-organic macrocycles remain relatively under-investigated. Aluminum molecular rings, with their inner cavities and numerous binding sites, present a promising option for constructing rotaxanes. Here, we introduce an innovative \"ring-donor···axle-acceptor\" motif utilizing Al8 molecular rings, enabling the stepwise assembly of molecules, complexes, and polymers through tailored coordination chemistry. This novel approach can not only be applied to macrocycle-based systems like catenanes but also enhance specific functionalities progressively.
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  • 文章类型: Journal Article
    全苯型多环芳烃或大环通常显示局部芳香性。另一方面,将醌型单元结合到骨架中可能导致有效的电子离域和全局(反)芳香性。在这项工作中,主要通过分子间Friedel-Crafts烷基化反应有效地合成了包含对醌二甲烷和三苯胺单元的完全π共轭大环1和双环2。它们可以被认为是四氮杂苯和六氮杂萘,分别,由于它们与苯和萘相似的几何形状和电子结构。X射线晶体学分析显示,1和2的几何形状很大,可变温度NMR测量显示,由于苯环的环翻转受限,动态过程缓慢。1和2可以容易地氧化成较高氧化态的物质。NMR和理论计算表明,12+和14+显示出全球性的反芳香性和芳香性,分别,具有显性的32π和30π共轭途径,而对于双宏环2,其指示22+,分切24+和六合26+展示了全球芳香性,反芳香性,和54π的芳香性,沿最外层主链的52π和50π共轭途径,分别。
    All-benzenoid polycyclic aromatic hydrocarbons or macrocycles usually display localized aromaticity. On the other hand, incorporation of quinoidal units into the skeleton could lead to effective electron delocalization and global (anti)aromaticity. In this work, fully π-conjugated macrocycle 1 and bismacrocycle 2 containing both para-quinodimethane and triphenylamine units are efficiently synthesized mainly through intermolecular Friedel-Crafts alkylation reaction. They can be considered as a tetraazasuperbenzene and a hexaazasupernaphthalene, respectively, due to their similar geometry and electronic structures to the benzene and naphthalene. X-ray crystallographic analyses reveal a largely planar geometry for both 1 and 2 and variable-temperature NMR measurements disclose slow dynamic processes owing to restricted ring flipping of the phenyl rings. 1 and 2 can be easily oxidized into higher-oxidation-state species. NMR and theoretical calculations indicate that 12+ and 14+ show global anti-aromaticity and aromaticity, respectively, with a dominant 32π and 30π conjugation pathway, while for the bismacrocycle 2, its dication 22+, tetracation 24+ and hexacation 26+ exhibit global aromaticity, antiaromaticity, and aromaticity with a 54π, 52π and 50π conjugation pathway along the outermost backbone, respectively.
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  • 文章类型: Journal Article
    冠醚(CEs),以其特殊的主客复合而闻名,在共价有机框架(COF)中提供作为接头的潜力,以增强催化和主客体结合的性能。然而,它们的高度柔性构象和低对称性限制了CE衍生COF的多样性。这里,我们介绍了一种新型的C3对称氮杂冠醚(ACE)结构单元,三(吡啶并)[18]冠-6(TPy18C6),用于通过网状合成制备COF(ACE-COF-1和ACE-COF-2)。这种方法可以将CE精确集成到COF中,增强Ni2+离子固定,同时保持结晶度。所得的Ni2掺杂的COF(Ni@ACE-COF-1和Ni@ACE-COF-2)具有高放电容量(在8mA·cm-2时高达1.27mAh·cm-2)和出色的循环稳定性(>1000次循环)作为含水碱性镍锌电池中的阴极材料。这项研究是大环化学和网状化学无缝整合的典范,为将宏循环合成子驱动策略扩展到各种COF构建块奠定基础,最终产生为特定应用量身定制的先进材料。
    Crown ethers (CEs), known for their exceptional host-guest complexation, offer potential as linkers in covalent organic frameworks (COFs) for enhanced performance in catalysis and host-guest binding. However, their highly flexible conformation and low symmetry limit the diversity of CE-derived COFs. Here, we introduce a novel C3-symmetrical azacrown ether (ACE) building block, tris(pyrido)[18]crown-6 (TPy18C6), for COF fabrication (ACE-COF-1 and ACE-COF-2) via reticular synthesis. This approach enables precise integration of CEs into COFs, enhancing Ni2+ ion immobilization while maintaining crystallinity. The resulting Ni2+-doped COFs (Ni@ACE-COF-1 and Ni@ACE-COF-2) exhibit high discharge capacity (up to 1.27 mAh ⋅ cm-2 at 8 mA ⋅ cm-2) and exceptional cycling stability (>1000 cycles) as cathode materials in aqueous alkaline nickel-zinc batteries. This study serves as an exemplar of the seamless integration of macrocyclic chemistry and reticular chemistry, laying the groundwork for extending the macrocyclic-synthon driven strategy to a diverse array of COF building blocks, ultimately yielding advanced materials tailored for specific applications.
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  • 文章类型: Journal Article
    环肽是一种既定的药物,与传统的小分子相比,能够与更广泛的蛋白质靶标结合,同时还能够口服利用和细胞渗透。历史上,环肽药物几乎完全是通过天然产物挖掘方法发现的;然而,在过去的二十年中,已经看到了能够快速地将从头(即不是天然产物衍生的)环肽配体鉴定为感兴趣的靶标的展示筛选方法的发展。
    在这篇评论中,作者描述了环肽药物的当前临床前景。本文重点介绍了导致不同分子类别发展的发现方法,以及新技术的发展如何,特别是噬菌体和mRNA展示,扩大了此类分子的临床适用性。
    从头环肽药物发现领域正在走向成熟,近年来,第一批通过展示筛选方法确定的药物进入市场。还有更多的人在临床试验中;然而,重大的技术挑战依然存在。未来几年将需要技术改进以促进能够口服利用并靶向细胞内蛋白质的膜可渗透环状肽的鉴定。
    UNASSIGNED: Cyclic peptides are an established class of pharmaceuticals, with the ability to bind to a broader range of protein targets than traditional small molecules while also being capable of oral availability and cell penetration. Historically, cyclic peptide drugs have been discovered almost exclusively through natural product mining approaches; however, the last two decades have seen the development of display screening approaches capable of rapidly identifying de novo (i.e. not natural product derived) cyclic peptide ligands to targets of interest.
    UNASSIGNED: In this review, the authors describe the current clinical landscape for cyclic peptide pharmaceuticals. This article focuses on the discovery approaches that have led to the development of different classes of molecules and how the development of newer technologies, particularly phage and mRNA display, has broadened the clinical applicability of such molecules.
    UNASSIGNED: The field of de novo cyclic peptide drug discovery is reaching maturity, with the first drugs identified through display screening approaches reaching the market in recent years. Many more are in clinical trials; however, significant technical challenges remain. Technological improvements will be required over the coming years to facilitate the identification of membrane permeable cyclic peptides capable of oral availability and targeting intracellular proteins.
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  • 文章类型: Journal Article
    目前还没有批准的用于拉沙病毒(LASV)感染的疫苗或治疗剂。为了鉴定具有抗LASV活性的化合物,我们在生物安全4级下进行了基于细胞的筛查活动,并测试了近6万种化合物对感染性报道分子LASV的活性.来自该筛选的命中包括几个结构相关的大环。最有力的,Mac128对报告病毒具有亚微摩尔EC50,抑制野生型进化枝IVLASV,并将病毒滴度降低4个数量级。机制研究表明,Mac128在聚合酶水平上抑制病毒复制。
    There are no approved vaccines or therapeutics for Lassa virus (LASV) infections. To identify compounds with anti-LASV activity, we conducted a cell-based screening campaign at biosafety level 4 and tested almost 60,000 compounds for activity against an infectious reporter LASV. Hits from this screen included several structurally related macrocycles. The most potent, Mac128, had a sub-micromolar EC50 against the reporter virus, inhibited wild-type clade IV LASV, and reduced viral titers by 4 orders of magnitude. Mechanistic studies suggested that Mac128 inhibited viral replication at the level of the polymerase.
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  • 文章类型: Journal Article
    Quizalofop-p-乙基是一种广泛使用的除草剂,也对人类健康和环境安全构成威胁。然而,到目前为止,仍然缺乏简单和原位检测quizalofop-p-乙基的方法。在这项工作中,首次开发了基于氰基二苯乙烯-吡啶大环(CPM)的荧光传感器,用于检测quizalofop-p-乙基。CPM是通过吡啶取代的氰基二苯乙烯衍生物与4,4'-双(氯甲基)联苯的“11”缩合制备的,收率为68%。在感应quizalofop-p-乙基后,水性介质中CPM的弱荧光转移为强橙色荧光。这种传感行为对28种除草剂和离子表现出很高的选择性。检测限(LOD)为2.98×10-8M,定量限(LOQ)为9.94×10-8M(λex=390nm,λem=在512nm和535nm之间的最大发射),动态范围为0.01-0.9eq。quizalofop-p-乙基与传感器CPM的结合常数(Ka)为3.2×106M-1。1:1的传感机制被证实为quizalofop-p-乙基位于CPM的腔中,这增强了聚集效应并减少了芳香基团的分子内旋转,从而获得更好的AIE效果。CPM对quizalofop-p-乙基的感知能力已有效地应用于试纸实验中,农产品测试和真实水样,表明CPM在实际环境中简单原位检测quizalofop-p-乙基具有良好的应用前景。
    Quizalofop-p-ethyl is a widely used herbicide that also poses a risk to human health and environmental safety. However, there is still a lack of simple and in-situ detecting method for quizalofop-p-ethyl so far. In this work, the fluorescent sensor was firstly developed on detection of quizalofop-p-ethyl based on cyanostilbene-pyridine macrocycle (CPM). CPM was prepared by the \"1 + 1\" condensation of pyridine-substituted cyanostilbene derivative with 4,4\'-Bis(chloromethyl)biphenyl in 68 % yield. The weak fluorescence of CPM in aqueous media transferred to strong orange fluorescence after sensing quizalofop-p-ethyl. This sensing behavior exhibited high selectivity among 28 kinds of herbicides and ions. The limitation of detection (LOD) was 2.98 × 10-8 M and the limitation of quantification (LOQ) was 9.94 × 10-8 M (λex = 390 nm, λem = the maximum emission between 512 nm and 535 nm) with a dynamic range of 0.01-0.9 eq. The binding constant (Ka) of quizalofop-p-ethyl to the sensor CPM was 3.2 × 106 M-1. The 1:1 sensing mechanism was confirmed as that quizalofop-p-ethyl was located in the cavity of CPM, which enhanced aggregating effect and reduced the intramolecular rotation of aromatic groups for better AIE effect. The sensing ability of CPM for quizalofop-p-ethyl had been efficiently applied in test paper experiments, agricultural product tests and real water samples, revealing that CPM has good application prospect for simple and in-situ detection of quizalofop-p-ethyl in real environment.
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