laboratory detection

  • 文章类型: Journal Article
    分裂细胞是由于对红细胞的机械损伤而产生的破碎的红细胞,通常是由于微血管病性血栓性疾病或机械因素。早期实验室检测裂孔细胞对及时诊断具有重要影响,有效治疗,以及血小板减少性紫癜和溶血性尿毒综合征等疾病的积极预后。由于科学技术的飞速发展,实验室血液学也取得了进展。由全自动化血液分析仪和全自动化形态学分析仪执行的测试的准确性和效率已经显著提高。近年来,计算能力和机器学习(ML)算法开发的实质性改进极大地扩展了自主机器潜力的极限。机器学习和人工智能(AI)的快速发展导致了分裂细胞自动检测的迭代和升级。然而,随着操作流程的显著简化,AI带来了挑战。本文综述了实验室血吸虫细胞检测的进展,血吸虫细胞与临床疾病的关系,和AI在血吸虫细胞检测中的进展。此外,讨论了当前的挑战和可能的解决方案,以及AI技术在外周血血吸虫细胞检测中的巨大潜力。
    Schistocytes are fragmented red blood cells produced as a result of mechanical damage to erythrocytes, usually due to microangiopathic thrombotic diseases or mechanical factors. The early laboratory detection of schistocytes has a critical impact on the timely diagnosis, effective treatment, and positive prognosis of diseases such as thrombocytopenic purpura and hemolytic uremic syndrome. Due to the rapid development of science and technology, laboratory hematology has also advanced. The accuracy and efficiency of tests performed by fully automated hematology analyzers and fully automated morphology analyzers have been considerably improved. In recent years, substantial improvements in computing power and machine learning (ML) algorithm development have dramatically extended the limits of the potential of autonomous machines. The rapid development of machine learning and artificial intelligence (AI) has led to the iteration and upgrade of automated detection of schistocytes. However, along with significantly facilitated operation processes, AI has brought challenges. This review summarizes the progress in laboratory schistocyte detection, the relationship between schistocytes and clinical diseases, and the progress of AI in the detection of schistocytes. In addition, current challenges and possible solutions are discussed, as well as the great potential of AI techniques for schistocyte testing in peripheral blood.
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  • 文章类型: Journal Article
    背景:在越来越多的产生碳青霉烯酶的肠杆菌科(CPE)分离物中发现了OXA-48样碳青霉烯酶,它们正在传播到几个国家。尽管这种oxacillinase导致对碳青霉烯类抗生素的耐药性较弱,但不影响广谱头孢菌素活性,当它们与其他抵抗机制相关时,对这些抗生素的耐药水平可能明显更高。这种对碳青霉烯类和头孢菌素的耐药性较弱,在缺乏其他抗性机制的情况下,可能会使OXA-48样的分离株在实验室常规中未被发现。此外,缺乏针对这种酶的特异性筛选测试使这些分离物的检测复杂化。该报告表征了在我们实验室中检测到的第一批OXA-48样CPE分离株。
    方法:这项研究是在国家研究所进行的,利马-秘鲁,2021年3月至12月。作为常规微生物学研究的一部分,检测到OXA-48样CPE分离株,和临床数据是通过查看病历获得的。自动化微生物系统通过稀释方法提供细菌鉴定和抗微生物剂敏感性曲线。此外,柱层析测试用于检测碳青霉烯酶酶,包括OXA-48-like.最后,通过聚合酶链反应PCR扩增blaOXA-48样酶进行OXA-48样酶的分子鉴定。
    结果:分离出7株OXA-48样CPE菌株。值得注意的是,在所有情况下,自动化系统发布的厄他培南的最低抑制浓度(MIC)≥1ug/mL,哌拉西林/他唑巴坦的MIC>64/4ug/mL.此外,发现对亚胺培南和美罗培南的耐药类别(2/7),任何这些碳青霉烯类的至少一个不确定类别(5/7),和其他丝氨酸β-内酰胺酶如超广谱β-内酰胺酶(3/7)和AmpC(3/7)。免疫层析研究证实了OXA-48样酶在所有分离物中的存在,而A班和B班被排除在外。最后,多重PCR,对于可以回收的五个分离株,显示碳青霉烯酶OXA-48样的扩增,而其他卡巴酶均未扩增A类或B类碳青霉烯酶基因。
    结论:我们确认在我们的癌症中心出现了OXA-48样CPE分离株,并强调需要对这些菌株实施监测和检测措施,控制他们的传播。我们发现了用于检测OXA-48样CPE的实用且廉价的方法:(1)在不存在A类和B类碳青霉烯酶的情况下,在抗菌谱中发现了对厄他培南和哌拉西林/他唑巴坦的耐药性,用于筛选和(2)免疫层析研究,用于确认。
    BACKGROUND: OXA-48-like carbapenemases have been found in a growing and varied number of carbapenemase-producing Enterobacteriaceae (CPE) isolates, and they are spreading to several countries. Although this oxacillinase leads to weak resistance to carbapenems without affecting broad-spectrum cephalosporin activity, when they are associated with other resistance mechanisms, the level of resistance to these antibiotics may be significantly higher. This weak resistance against carbapenems and cephalosporins, along with the absence of other resistance mechanisms, could render OXA-48-like harboring isolates undetected in the laboratory routine. In addition, the lack of a specific screening test for this enzyme complicates the detection of these isolates. This report characterizes the first isolates of OXA-48-like CPE detected in our laboratory.
    METHODS: The study was carried out at the Instituto Nacional de Enfermedades Neoplasicas, Lima - Peru, between March and December 2021. OXA-48-like CPE isolates were detected as part of the routine microbiological study, and clinical data were obtained by reviewing medical records. The automated microbiological system provides the bacterial identification and antimicrobial susceptibility profile by the dilution method. Additionally, the column chromatography test is used to detect carbapenemase enzymes, including OXA-48-like. Finally, the molecular identification of the OXA-48-like enzyme was carried out by Polymerase Chain Reaction PCR amplification for the blaOXA-48-like.
    RESULTS: Seven OXA-48-like CPE strains were isolated. Notably, in all cases, the automated system issued a minimum inhibitory concentration (MIC) of ≥1 ug/mL for ertapenem and a MIC of >64/4 ug/mL for piperacillin/tazobactam. In addition, resistance category to imipenem and meropenem was found (2/7), at least one indeterminate category for any of these carbapenems (5/7), and other serine β-lactamases such as Extended-spectrum beta-lactamases (3/7) and AmpC (3/7). The immunochromatographic study confirmed the presence of the OXA-48-like enzyme in all isolates, while class A and class B were ruled out for them. Finally, the multiplex PCR, for the five isolates that could be recovered, showed amplification for carbapenemase OXA-48-like, while none of the other carpabemases was amplified for class A or class B carbapenemase genes.
    CONCLUSIONS: We confirm the emergence of OXA-48-like CPE isolates in our cancer center and highlight the need to implement surveillance and detection measures of these strains, for controlling their dissemination. We found practical and inexpensive methodologies for the detection of OXA-48-like CPE: (1) the finding of resistance to ertapenem and piperacillin/tazobactam in the antibiogram in the absence of class A and B carbapenemases, for screening and (2) immunochromatographic study, for confirmation.
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  • 文章类型: Journal Article
    细菌耐药性已成为全球公共卫生威胁,其中,由于治疗选择有限,耐碳青霉烯类肠杆菌(CRE)的感染是全球抗感染领域最引人注目的问题之一。近年来,全球CRE传播的患病率有所增加,COVID-19的传播在一定程度上加剧了这种情况。碳青霉烯酶可以诱导CRE抗性,波林,外排泵,青霉素结合蛋白改变,和生物膜生产。删除,突变,插入,相应编码基因的转录后修饰可能影响肠杆菌对碳青霉烯类抗生素的敏感性。正在开发检测CRE和探索其抗性机制的临床和实验室方法。由于抗生素的选择有限,CRE感染的临床治疗也面临着严峻的挑战。CRE的临床治疗包括单一或联合使用抗生素,一些新的抗生素和治疗方法也正在开发中。因此,这篇综述总结了流行病学,抵抗机制,CRE感染的筛查和临床治疗,为临床预防提供参考,控制和治疗CRE感染。
    Bacterial drug resistance has become a global public health threat, among which the infection of carbapenem-resistant Enterobacterales (CRE) is one of the top noticeable issues in the global anti-infection area due to limited therapy options. In recent years, the prevalence of CRE transmission around the world has increased, and the transmission of COVID-19 has intensified the situation to a certain extent. CRE resistance can be induced by carbapenemase, porin, efflux pump, penicillin-binding protein alteration, and biofilm production. Deletion, mutation, insertion, and post-transcriptional modification of corresponding coding genes may affect the sensitivity of Enterobacterales bacteria to carbapenems. Clinical and laboratory methods to detect CRE and explore its resistance mechanisms are being developed. Due to the limited options of antibiotics, the clinical treatment of CRE infection also faces severe challenges. The clinical therapies of CRE include single or combined use of antibiotics, and some new antibiotics and treatment methods are also being developed. Hence, this review summarizes the epidemiology, resistance mechanisms, screening and clinical treatments of CRE infection, to provide references for clinical prevention, control and treatment of CRE infection.
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  • 文章类型: Journal Article
    背景:核酸测试是诊断临床样品中病毒感染的可靠方法。然而,当病例数量巨大并且病毒本身存在个体差异时,假阴性结果的可能性增加。随着新型冠状病毒研究的进展,已经开发了使用血清特异性抗体作为检测靶标的新检测技术。这些检测技术效率高,周转时间短,最终缩短了诊断所需的时间。本文总结了迄今为止报道的新型冠状病毒检测方法,并讨论了其原理和技术特点。
    目的:比较各种SARS-CoV-2检测方法的优缺点,并分析其原理。
    方法:搜索了迄今为止发表的SARS-CoV-2检测方法的报告,提取数据并进行分析。使用NCBI的引物blast功能来分析qRT-PCR检测中使用的引物。
    结果:以核衣壳蛋白基因为目标检测灵敏度最高,达到96.6%。其余目标的检测效率为66.7%至96.0%。各种新的检测方法,如血清特异性抗体检测,可以加快测试时间。然而,由于方法的复杂性和更高的测试要求,似乎它不能完全替代qRT-PRC测试。
    结论:随着技术的进步和方法的改进,SARSCoV-2的检测方法已日趋成熟。这些进展为SARS-CoV-2的检测提供了很大的帮助。
    BACKGROUND: Nucleic acid testing is a reliable method for diagnosing viral infection in clinical samples. However, when the number of cases is huge and there are individual differences in the virus itself, the probability of false-negative results increases. With the advancement in research on the new coronavirus, new detection technologies that use serum-specific antibodies as detection targets have been developed. These detection technologies have high efficiency and shorter turnaround time, which ultimately shortens the time required for diagnosis. This article summarizes the methods that have been reported to date for the detection of the new coronavirus and discusses their principles and technical characteristics.
    OBJECTIVE: Compare the advantages and disadvantages of various SARS-CoV-2 detection methods and analyze their principles.
    METHODS: Searched reports on SARS-CoV-2 detection methods published so far, extracted the data and analyzed them. Use the primer blast function of NCBI to analyze the primers used in qRT-PCR detection.
    RESULTS: The detection sensitivity was the highest when nucleocapsid protein gene was used as the target, reaching 96.6%. The detection efficiency of the remaining targets ranged from 66.7% to 96.0%. Various new detection methods, like Serum specific antibody detection, can speed up the test time. However, due to the complexity of the method and higher testing requirements, it seems that it cannot be used as a complete replacement for qRT-PRC testing.
    CONCLUSIONS: With the advancement of technology and the improvement of methods, the detection methods of SARSCoV-2 have become more mature. These advances provided great help to the detection of SARS-CoV-2.
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  • 文章类型: Journal Article
    耐药性革兰氏阴性病原体的演变对公共卫生部门构成重大威胁,特别是在发展中国家,因为医疗设施稀缺。新德里金属-β-内酰胺酶(NDM)是一种有效的β-内酰胺酶,能够水解几种可用的抗生素。从新德里的一名瑞典患者的肺炎克雷伯菌和大肠杆菌的临床分离物中鉴定出NDM,印度。这种酶水平传递给各种革兰氏阴性菌,对各种抗生素产生耐药性,这些抗生素导致治疗至关重要。这些细菌增加死亡率并在经济负担中起着不可或缺的作用。产生NDM的分离株的有效管理需要区域中每个医疗保健环境之间的协调。在这次审查中,我们介绍了儿童NDM的患病率,死亡率和耐药细菌的经济负担,NDM细菌的克隆传播和产生NDM的病原体的现代检测技术。
    The evolution of antimicrobial-resistant Gram-negative pathogens is a substantial menace to public health sectors, notably in developing countries because of the scarcity of healthcare facilities. New Delhi metallo-β-lactamase (NDM) is a potent β-lactam enzyme able to hydrolyze several available antibiotics. NDM was identified from the clinical isolates of Klebsiella pneumoniae and Escherichia coli from a Swedish patient in New Delhi, India. This enzyme horizontally passed on to various Gram-negative bacteria developing resistance against a variety of antibiotics which cause treatment crucial. These bacteria increase fatality rates and play an integral role in the economic burden. The efficient management of NDM-producing isolates requires the coordination between each healthcare setting in a region. In this review, we present the prevalence of NDM in children, fatality and the economic burden of resistant bacteria, the clonal spread of NDM harboring bacteria and modern techniques for the detection of NDM producing pathogens.
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  • 文章类型: Journal Article
    严重急性呼吸道综合症冠状病毒2(SARS-CoV-2)感染在全球迅速蔓延,就它已经成为全球大流行而言。因此,引入血清学试验测定IgM和IgG抗体已成为主要的诊断工具,用于跟踪病毒的传播,从而允许其遏制。在我们的研究中,我们比较了护理点测试(POCT)侧流免疫测定(FIA)与自动化学发光免疫测定(CLIA),以评估其对COVID-19抗体检测的特异性和敏感性。
    我们发现IgM和IgG测试的特异性和敏感性不同。值得注意的是,IgMPOCTFIA方法与CLIA方法(金标准)的灵敏度较低(0.526),而IgGPOCTFIA方法与CLIA方法(金标准)测试具有更高的灵敏度(0.937);进一步,关于IgG,国际汽联和CLIA可以提供相当的信息。
    国际汽联方法可能有助于在短时间内进行评估,由于工作原因不能保证“社交距离”的受试者可能具有传染性。
    Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection spreaded rapidly worldwide, as far as it has become a global pandemic. Therefore, the introduction of serological tests for determination of IgM and IgG antibodies has become the main diagnostic tool, useful for tracking the spread of the virus and for consequently allowing its containment. In our study we compared point of care test (POCT) lateral flow immunoassay (FIA) vs automated chemiluminescent immunoassay (CLIA), in order to assess their specificity and sensibility for COVID-19 antibodies detection.
    We find that different specificities and sensitivities for IgM and IgG tests. Notably IgM POCT FIA method vs CLIA method (gold standard) has a low sensitivity (0.526), while IgG POCT FIA method vs CLIA method (gold standard) test has a much higher sensitivity (0.937); further, with respect of IgG, FIA and CLIA could arguably provide equivalent information.
    FIA method could be helpful in assessing in short time, the possible contagiousness of subjects that for work reasons cannot guarantee \"social distancing\".
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  • 文章类型: Evaluation Study
    目的:在临床实验室中快速检测肠杆菌中的碳青霉烯酶对于患者的管理至关重要。和感染预防和控制工作。
    方法:一项研究旨在评估RAPIDECCARBANP®的性能,β-CARBA®,NG-TestCARBA5®,改良碳青霉烯灭活法,和EDTA版本(eCIM)针对具有多种碳青霉烯酶的肠杆菌(n=216)的全球集合进行测定。
    结果:RAPIDECCARBANP®测定法的灵敏度为98.6%,特异性为19.6%,β-CARBA®的灵敏度为94%,特异性为97.8%,但对含有肺炎克雷伯菌碳青霉烯酶(KPC)的分离株的敏感性较低。NG-测试CARBA5®具有96.3%的总体灵敏度和100%的特异性,并且未能检测到具有blaIMP-13、blaIMP-14的分离株。eCIM用草酸酶(OXA)-48-样酶给出假阳性结果。
    结论:NG-TestCARBA5®测定法在技术上简单,并提供了有关碳青霉烯酶类型的快速准确结果。这些信息对患者具有潜在的治疗益处。
    OBJECTIVE: The rapid detection of carbapenemases among Enterobacterales in clinical laboratories is critical for management of patients, and infection prevention and control efforts.
    METHODS: A study was designed to evaluate the performances of the RAPIDEC CARBA NP®, β-CARBA®, NG-Test CARBA 5®, modified carbapenem-inactivation method, and EDTA version (eCIM) assays against a global collection of Enterobacterales (n = 216) with diverse carbapenemases.
    RESULTS: The RAPIDEC CARBA NP® assay had a sensitivity of 98.6% and specificity of 19.6% and β-CARBA® a sensitivity of 94% and specificity of 97.8%, but showed low sensitivity with Klebsiella Pneumoniae Carbapenemase (KPC)-containing isolates. The NG-Test CARBA 5® had an overall sensitivity of 96.3% and specificity of 100% and failed to detect isolates with blaIMP-13, blaIMP-14. The eCIM gave false- positive results with Oxacillinase (OXA)-48-like enzymes.
    CONCLUSIONS: The NG-Test CARBA 5® assay was technically simple and provided rapid accurate results on the types of carbapenemases. Such information has potential treatment benefits for patients.
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    文章类型: Journal Article
    目的:评价疾病预防控制系统实验室检测血清中5种金属元素的能力。
    方法:样品中的钙,镁,铁,铜和锌检测被分配到48个疾病预防和控制系统的实验室。在每个实验室的检测过程中,允许使用电感耦合等离子体质谱(ICP-MS)分析或自选测定方法。对检测结果进行稳健统计分析,用Z值评价检测能力。
    结果:在参与研究的实验室中,报告了40种金属元素检测结果。其中,29个实验室取得了令人满意的结果,11个实验室的结果不令人满意或可疑。该实验室间比较的实验室合格率为60。4%。
    结论:钙的检测水平,镁,铁,血清中的铜和锌在疾病预防和控制系统中总体令人满意,但一些实验室的检测能力有待进一步提高。
    OBJECTIVE: To evaluate the ability for the detection of 5 metal elements in serum in the laboratories of disease prevention and control system.
    METHODS: The samples for calcium, magnesium, iron, copper and zinc detection were distributed to 48 laboratories of disease prevention and control system. Inductively coupled plasma mass spectrometry( ICP-MS) analysis or self-selected determination method were allowed to use during detection for each laboratory. The results were analyzed by robust statistical analysis and Z value was used to evaluate the detection ability.
    RESULTS: Of the laboratories involved in the study, 40 reported results of metal elements detection. Among them, 29 laboratories had satisfactory results, and 11 laboratories had unsatisfactory or suspicious results. The laboratory pass rate of this inter-laboratory comparison was60. 4%.
    CONCLUSIONS: The detection level of calcium, magnesium, iron, copper and zinc in serum in disease prevention and control system is generally satisfactory, but the detection ability of some laboratories needs to be further improved.
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  • 文章类型: Journal Article
    脊柱结核是肺外结核和骨关节结核的常见表现。常见的临床表现包括全身症状,背痛,脊髓压痛,截瘫,和脊柱畸形。它们是瘫痪的常见原因,并可能增加患者的死亡率。大多数脊柱结核病例仍未确诊,早期临床症状和影像学表现缺乏特异性,这解释了为什么很难从非典型脊柱转移瘤中识别出来,布鲁氏菌病和其他疾病。脊柱结核的漏诊和误诊率较高。如果能够早期发现脊柱结核诊断目标,治疗靶点可以得到有效治疗,这不仅可以控制疾病的进展,缩短疗程,还能减轻经济压力,避免脊柱畸形。因此,早期诊断应该是我们的重点。综合运用多种诊断目标可进步脊柱结核的早期诊断率。这里,我们回顾了实验室的进展,影像学和基因检测在脊柱结核诊断中的应用。
    Spinal tuberculosis is a common manifestation of extrapulmonary tuberculosis and osteoarticular tuberculosis. Common clinical manifestations include constitutional symptoms, back pain, spinal tenderness, paraplegia, and spinal deformities. They are the common causes of paralysis and could increase the mortality in patients. Most cases of spinal tuberculosis remaining undiagnosed, and early clinical symptoms and imaging manifestations lack specificity, which explained the reason why it is difficult to identify from atypical spinal metastases, brucellosis and other diseases. The rate of missed diagnosis and misdiagnosis for spinal tuberculosis is high. If spinal tuberculosis diagnostic targets could be early detected, the therapeutic targets can be effectively treated, which can not only control the progress of the disease and shorten the course of treatment, but also reduce the economic pressure and avoid spinal deformity. Therefore, early diagnosis should be our focus. Comprehensive use of a variety of diagnostic targets can improve the early diagnosis rate of spinal tuberculosis. Here, we review the progress of laboratory, imaging and gene detection in the diagnosis of spinal tuberculosis in recent years.
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  • 文章类型: Journal Article
    Multi-drug-resistant Gram-negative bacteria are of major clinical concern. The increasing prevalence of carbapenemase-producing Enterobacteriaceae (CPE), resistant to all beta-lactams including carbapenems and able to colonize the large intestine, represents a key threat. Rapid, accurate detection of intestinal CPE colonization is critical to minimize transmission, and hence reduce costly, difficult-to-treat CPE infections. There is currently no \'gold standard\' CPE detection method. A survey of diagnostic laboratories in England found considerable heterogeneity in diagnostic CPE testing methods and procedures.
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