intermolecular interactions

分子间相互作用
  • 文章类型: Journal Article
    本研究的目的是评估300W时超声辅助间歇翻滚(UT)的效果,20kHz和40min的构象,在不同的翻滚时间(4和6小时),肌原纤维蛋白(MPs)的分子间相互作用和聚集及其诱导的凝胶化特性。拉曼结果表明,所有翻滚处理都导致MPs的螺旋结构展开。与单次间歇翻滚治疗(ST)相比,UT处理对增强分子间氢键和促进有序β-折叠结构的形成具有更明显的作用。当翻滚的时间相同时,UT处理导致较高的表面疏水性,MPs中的荧光强度和二硫键含量,诱导MPs分子之间疏水相互作用和二硫键交联的发生,从而形成国会议员的聚集体。此外,来自溶解度的结果,颗粒大小,原子力显微镜和SDS-PAGE进一步表明,相对于ST治疗,UT处理在促进肌球蛋白重链的聚合方面更有效。UT组的MP聚集体比ST组更均匀。在凝胶化过程中,UT处理中预先形成的MPs聚集体增加了肌球蛋白的热稳定性,使其对肌球蛋白棒区域的热诱导展开更具抵抗力。此外,他们改善了蛋白质的尾-尾相互作用,导致形成结构良好的凝胶网络,与ST处理相比具有更高的凝胶强度和蒸煮产率。
    The aim of the present study was to evaluate the effects of ultrasound-assisted intermittent tumbling (UT) at 300 W, 20 kHz and 40 min on the conformation, intermolecular interactions and aggregation of myofibrillar proteins (MPs) and its induced gelation properties at various tumbling times (4 and 6 h). Raman results showed that all tumbling treatments led the helical structure of MPs to unfold. In comparison to the single intermittent tumbling treatment (ST), UT treatment exerted more pronounced effects on strengthening the intermolecular hydrogen bonds and facilitating the formation of an ordered β-sheet structure. When the tumbling time was the same, UT treatment caused higher surface hydrophobicity, fluorescence intensity and disulfide bond content in the MPs, inducing the occurrence of hydrophobic interaction and disulfide cross-linking between MPs molecules, thus forming the MPs aggregates. Additionally, results from the solubility, particle size, atomic force microscopy and SDS-PAGE further indicated that, relative to the ST treatment, UT treatment was more potent in promoting the polymerization of myosin heavy chain. The MPs aggregates in the UT group were more uniform than those in the ST group. During the gelation process, the pre-formed MPs aggregates in the UT treatment increased the thermal stability of myosin, rendering it more resistant to heat-induced unfolding of the myosin rod region. Furthermore, they improved the protein tail-tail interaction, resulting in the formation of a well-structured gel network with higher gel strength and cooking yield compared to the ST treatment.
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  • 文章类型: Journal Article
    背景:揭示基于二硝基胺铵(ADN)的液体推进剂中分子间相互作用的机理,并探索其性能变化的原因,通过理论方法对ADN和ADN-水(H2O)-甲醇(CH3OH)溶液进行了多视角相互作用分析。带结构,态密度(DOS),表面静电势(ESP),Hirshfeld表面,降低密度梯度(RDG),AIM拓扑分析,和爆轰性能进行了研究,结果表明,ADN和ADN-H2O-CH3OH溶液均存在氢键和范德华相互作用。通过引入小分子H2O和CH3OH,ADN-H2O-CH3OH溶液的爆轰性能略有下降,但灵敏度也有所下降。总的来说,ADN-H2O-CH3OH溶液的综合性能有所提高,应用范围扩大了。这些结果有助于在原子水平上更深入地了解基于ADN的液体推进剂,并有助于新型液体推进剂的开发。
    方法:通过无定形电池模块构建ADN和ADN-H2O-CH3OH溶液,并在MaterialsStudio的Dmol3模块中通过PBE方法通过GGA进行优化,并计算了它们的电子性质。使用CrystalExplorer3.0生成Hirshfeld表面。通过QTAIM对多种分子簇进行拓扑分析。这项工作中的QTAIM和RDG分析是由Multiwfn3.0生成的。
    BACKGROUND: Revealing the mechanism of intermolecular interactions in dinitroamine ammonium (ADN)-based liquid propellants and exploring the reasons for their performance changes, multi-perspective interaction analyses of ADN and ADN-water (H2O)-methanol (CH3OH) solutions have been conducted via theoretical methods. The band structure, density of states (DOS), surface electrostatic potential (ESP), Hirshfeld surface, reduced density gradient (RDG), AIM topological analysis, and detonation performance were studied and the results showed that both the ADN and ADN-H2O-CH3OH solutions had hydrogen bonds and van der Waals interactions. By introducing the small molecules H2O and CH3OH, the detonation performance of the ADN-H2O-CH3OH solution slightly decreased, but its sensitivity also decreased. Overall, the comprehensive performance of the ADN-H2O-CH3OH solution has improved, and the application range has expanded. These results are helpful for obtaining a deeper understanding of ADN-based liquid propellants at the atomic level and contribute to the development of new liquid propellants.
    METHODS: The ADN and ADN-H2O-CH3OH solutions were constructed by Amorphous cell module and optimized via GGA with PBE methods in the Dmol3 module of the Materials Studio, and their electronic properties were calculated. Hirshfeld surfaces were generated with CrystalExplorer 3.0. A topological analysis of a variety of molecular clusters was performed via QTAIM. The QTAIM and RDG analyses in this work were generated by Multiwfn 3.0.
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  • 文章类型: Journal Article
    我们研究了N-甲基甲酰胺(NMF)和di-N的非谐性和分子间相互作用,在纯液相中的N-甲基甲酰胺(DMF)在酰胺带中特别感兴趣。振动光谱,复折射率,在中(MIR)和近红外(NIR)区域(11,500-560cm-1;870-17857nm)中确定了复介电常数。色散分析基于经典阻尼谐振子(CDHO)和光谱的实部和虚部的同时建模。该数据提供了对液体酰胺中振动能量耗散和自缔合的见解。基于非谐波GVPT2//B3LYP/6-311++G(d,P)计算。DMF和NMF遵循不同的自关联,VCO的两个成分在MIR指纹中得到了证明,酰胺I波段的类似物。这些结论得到了来自NIR光谱的结构信息的支持。此外,检查了泛音和组合带在酰胺的MIR光谱中的贡献。关于NMF和DMF的分子相互作用和结构动力学的结论有助于更深入地了解酰胺基局部环境变化的影响。
    We investigated the anharmonicity and intermolecular interactions of N-methylformamide (NMF) and di-N,N-methylformamide (DMF) in the neat liquid phase with particular interest in the amide bands. The vibrational spectra, complex refractive index, and complex electric permittivity were determined in in the mid- (MIR) and near-infrared (NIR) regions (11,500-560 cm-1; 870-17857 nm). Dispersion analysis was based on the Classical Damped Harmonic Oscillator (CDHO) and simultaneous modelling of the real and imaginary components of the spectra. This data delivered insights into the vibrational energy dissipation and self-association in liquid amides. Identification of the MIR and NIR bands was based on anharmonic GVPT2//B3LYP/6-311++G(d,p) calculations. DMF and NMF follow distinct self-association, evidenced in the MIR fingerprint by the two components of the νCO, the analog of the Amide I band. These conclusions are supported by the structural information derived from the NIR spectra. Furthermore, the contribution of overtones and combination bands in the MIR spectra of amides was examined. The conclusions on molecular interactions and structural dynamics of NMF and DMF contribute to a deeper understanding of the effects of changes in the local environment of the amide group.
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  • 文章类型: Journal Article
    锂盐调节的电解质溶剂化化学,溶剂,和添加剂已经引起了极大的关注,因为它是在锂离子电池(LIBs)中设计高性能电解质的最有效策略。然而,实现微妙的平衡是一个持续的挑战,考虑到过强或过弱的Li+溶剂配位会显著损害电解质性能,包括热力学氧化还原稳定性和Li+去溶剂化动力学,限制实际应用。在这里,我们阐明了溶剂-溶剂相互作用在调节Li-溶剂化结构以增强电解质热力学和动力学性质方面的关键影响。作为一种范式,通过将强配位的碳酸亚丙酯(PC)与弱配位的环戊基甲基醚(CPME)结合,我们使用1H-1H相关光谱鉴定了PC和CPME之间的分子间相互作用。实验和计算结果强调了溶剂-溶剂相互作用在调节Li-溶剂/阴离子相互作用中的关键作用,这既可以增强热力学(即,抗还原能力)和动力学(即,Li+-去溶剂化过程)电解质的方面。此外,我们引入了一个界面模型来揭示溶剂-溶剂相互作用之间的复杂关系,电解质性能,和分子尺度上的电极界面行为。这项研究为溶剂-溶剂相互作用对电解质性能的关键影响提供了有价值的见解,这对于指导金属离子电池功能化电解质工程的未来努力至关重要。
    Electrolyte solvation chemistry regulated by lithium salts, solvents, and additives has garnered significant attention since it is the most effective strategy for designing high-performance electrolytes in lithium-ion batteries (LIBs). However, achieving a delicate balance is a persistent challenge, given that excessively strong or weak Li+-solvent coordination markedly undermines electrolyte properties, including thermodynamic redox stability and Li+-desolvation kinetics, limiting the practical applications. Herein, we elucidate the crucial influence of solvent-solvent interactions in modulating the Li+-solvation structure to enhance electrolyte thermodynamic and kinetic properties. As a paradigm, by combining strongly coordinated propylene carbonate (PC) with weakly coordinated cyclopentylmethyl ether (CPME), we identified intermolecular interactions between PC and CPME using 1H-1H correlation spectroscopy. Experimental and computational findings underscore the crucial role of solvent-solvent interactions in regulating Li+-solvent/anion interactions, which can enhance both the thermodynamic (i.e., antireduction capability) and kinetic (i.e., Li+-desolvation process) aspects of electrolytes. Additionally, we introduced an interfacial model to reveal the intricate relationship between solvent-solvent interactions, electrolyte properties, and electrode interfacial behaviors at a molecular scale. This study provides valuable insights into the critical impact of solvent-solvent interactions on electrolyte properties, which are pivotal for guiding future efforts in functionalized electrolyte engineering for metal-ion batteries.
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  • 文章类型: Journal Article
    已在43种具有不同氢键键合能力的溶剂中分析了具有两性离子结构的环亚铵盐的电子吸收光谱特性。这两个ylids缺乏荧光发射,但在电子吸收光谱中非常动态。使用ICT频段的最大值,目标是在ICT可见带的偏移与溶剂参数之间建立准确的关系,并估计第一()激发态的两个描述符:偶极矩和极化率。涉及两个程序:变分方法和Abe模型的关系。结果表明,与基态相比,两种甲基的激发态偶极矩在吸收过程中减小。在Abe模型中引入忽略分子间H键相互作用的校正项,可以更准确地确定两个描述符。两种ylids的强溶剂化变色响应已进一步应用于根据其特定参数区分溶剂。主成分分析应用于五个选定的属性,包括电荷转移带的最大值。将结果进一步应用于区分几种二元溶剂混合物。
    The electronic absorption spectral characteristics of cycloimmonium ylids with a zwitterionic structure have been analyzed in forty-three solvents with different hydrogen bonding abilities. The two ylids lack fluorescence emission but are very dynamic in electronic absorption spectra. Using the maximum of the ICT band, the goal was to establish an accurate relationship between the shift of the ICT visible band and the solvent parameters and to estimate two of the descriptors of the first (the) excited state: the dipole moment and the polarizability. Two procedures were involved: the variational method and the relationships of the Abe model. The results indicate that the excited state dipole moment of the two methylids decreases in the absorption process in comparison with the ground state. The introduction of a correction term in the Abe model that neglects the intermolecular H-bonding interactions leads to a more accurate determination of the two descriptors. The strong solvatochromic response of both ylids has been further applied in distinguishing the solvents as a function of their specific parameters. Principal component analysis was applied to five selected properties, including the maximum of the charge transfer band. The results were further applied to discriminate several binary solvent mixtures.
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  • 文章类型: Journal Article
    姜黄素(Cur)通过倾倒(P-)和滴落(D-)方案通过反溶剂方法加载到木质素纳米颗粒(LNP)中,分别,和Cur负载的LNP(Cur/LNP)进行了比较表征。结果表明,P-Cur/LNP(62-92nm)远小于D-Cur/LNP(134-139nm)。对于这两个政权来说,它们的最大装载效率相当(91±3%),而滴落制度(236.2mg/g)显示出比倾倒制度(174.6mg/g)更高的负载能力。在这两个政权中,Cur通过疏水性以无定形形式加载,氢键,和π-π与木质素基质的相互作用,并在体外消化试验中证明了可控释放。相比之下,D-Cur/LNP中的Cur对光降解表现出更高的稳定性,热处理,比P-Cur/LNP存储30天,P-Cur/LNP的抗氧化活性高于D-Cur/LNP。目前的发现证明LNP是稳定和控制释放亲脂性植物化学物质以及改善其生物活性的有价值的工具。
    Curcumin (Cur) was loaded in lignin nanoparticles (LNP) via an antisolvent method by pouring (P-) and dropping (D-) regimes, respectively, and Cur-loaded LNP (Cur/LNP) were comparatively characterized. The results indicated that P-Cur/LNP (62-92 nm) was much smaller than D-Cur/LNP (134-139 nm). For both regimes, their maximum loading efficiencies were comparable (91 ± 3%), while dropping regime (236.2 mg/g) demonstrated a higher loading capacity than pouring regime (174.6 mg/g). In both regimes, Cur was loaded in an amorphous form via the hydrophobic, hydrogen-bonding, and π-π interactions with lignin matrix and it demonstrated a controlled release in in vitro digestion test. In comparison, Cur in D-Cur/LNP showed higher stabilities against photodegradation, thermal treatment, and 30-d storage than that in P-Cur/LNP, while P-Cur/LNP concluded a higher antioxidant activity than D-Cur/LNP. The present findings attested that LNP was a valuable tool to stabilize and controlled release of lipophilic phytochemicals as well as improve their bioactivities.
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  • 文章类型: Journal Article
    在液体中可视化聚合物模型的需求不断增长,在分子动力学(MD)模拟中提出了计算挑战,因为这需要在合适的力场下出现的模型来准确地捕获潜在的分子行为。在我们目前的研究中,我们采用TIP3P电位对水和所有原子优化电位进行液体模拟力场,通过考虑磷腈基聚合物在锂离子聚合物电池中的潜在用途,研究了磷腈基聚合物的液体电解质行为。我们探索了聚合物的局部结构,链条包装,润湿性,以及在MD模拟中使用伪连续体模型的组合对硅表面的疏水趋势,和表面敏感和频率发生(SFG)振动光谱。这一发现为磷腈的分子结构提供了宝贵的见解。这种方法确定了与空气和亲水单元与水分子的疏水相互作用在理解磷腈聚合物在界面的行为和性质方面的重要性。为材料科学的进步做出贡献。MD研究独特地捕获了聚合物-离子键的痕迹,观察到随着聚合物重量分数的增加而变得更加明显。对这种连接对锂离子扩散运动的影响的理论观察为控制水性环境中磷腈基聚合物电解质内原子和分子行为的基本物理学提供了有价值的见解。此外,这些预测在空气-水界面的分子水平描述中得到了证实,从SFG光谱测量的OH振荡器强度变化可以证明。这项研究的基本发现为利用MD模拟作为一种通用方法开辟了新的途径,以深入了解聚合物的分子间相互作用。它可能有助于生物医学和能源相关研究的应用,如聚合物锂离子电池,燃料电池,和有机太阳能电池。
    A growing demand to visualize polymer models in liquid poses a computational challenge in molecular dynamics (MD) simulation, as this requires emerging models under suitable force fields (FFs) to capture the underlying molecular behaviour accurately. In our present study, we have employed TIP3P potential on water and all atomistic optimized potentials for liquid simulations FFs to study the liquid electrolyte behavior of phosphazene-based polymer by considering its potential use in lithium-ion polymer batteries. We have explored the polymer\'s local structure, chain packing, wettability, and hydrophobic tendencies against the silicon surface using a combination of a pseudocontinuum model in MD simulation, and surface-sensitive sum frequency generation (SFG) vibrational spectroscopy. The finding yields invaluable insights into the molecular architecture of phosphazene. This approach identifies the importance of hydrophobic interactions with air and hydrophilic units with water molecules in understanding the behavior and properties of phosphazene-based polymers at interfaces, contributing to its advancements in materials science. The MD study uniquely captures traces of the polymer-ion linkage, which is observed to become more pronounced with the increase in polymer weight fraction. The theoretical observation of this linkage\'s influence on lithium-ion diffusion motion offers valuable insights into the fundamental physics governing the behavior of atoms and molecules within phosphazene-based polymer electrolytes in aqueous environments. Further these predictions are corroborated in the molecular-level depiction at the air-aqueous interface, as evidenced from the OH-oscillator strength variation measured by the SFG spectroscopy.The fundamental findings from this study open new avenues for utilizing MD simulation as a versatile methodology to gain profound insights into intermolecular interactions of polymer. It could be useful in the application of biomedical and energy-related research, such as polymer lithium-ion batteries, fuel cells, and organic solar cells.
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  • 文章类型: Journal Article
    治疗性抗体的自缔合可导致粘度升高并在制造和配制中产生问题。以及限制皮下注射。一些抗体的高浓度粘度已通过可变结构域突变或通过添加制剂赋形剂而降低。相比之下,Fc突变对抗体粘度的影响已被最低限度地探索。这里,我们研究了一组常见和临床验证的Fc突变对两种密切相关的人源化IgG1,κ抗体的粘度的影响,奥马珠单抗(抗IgE)和曲妥珠单抗(抗HER2)。此处提供的数据表明,Fab-Fab和Fab-Fc相互作用均有助于奥马珠单抗的高粘度,在自联想的四接触模型中。最引人注目的是,通过Fc修饰延长半衰期(M252Y:S254T:T256E)和糖基化(N297G),奥马珠单抗(176cP)的高粘度降低了10.7和2.2倍,分别。相关的单突变(S254T和T256E)各自使奥马珠单抗的粘度降低约6倍。替代的半衰期延长Fc突变体(M428L:N434S)在将奥马珠单抗的粘度增加1.5倍中具有相反的作用。不同的Fc变体使曲妥珠单抗的低粘度(8.6cP)不变或增加≤2倍。分子动力学模拟提供了对Fc突变在调节Fc的静电和疏水表面性质以及构象稳定性中的影响的机械洞察。这项研究表明,某些IgG1抗体的高粘度可以通过Fc突变来缓解,从而提供了一个额外的工具,以帮助设计未来的抗体治疗可能适用于皮下递送。
    The self-association of therapeutic antibodies can result in elevated viscosity and create problems in manufacturing and formulation, as well as limit delivery by subcutaneous injection. The high concentration viscosity of some antibodies has been reduced by variable domain mutations or by the addition of formulation excipients. In contrast, the impact of Fc mutations on antibody viscosity has been minimally explored. Here, we studied the effect of a panel of common and clinically validated Fc mutations on the viscosity of two closely related humanized IgG1, κ antibodies, omalizumab (anti-IgE) and trastuzumab (anti-HER2). Data presented here suggest that both Fab-Fab and Fab-Fc interactions contribute to the high viscosity of omalizumab, in a four-contact model of self-association. Most strikingly, the high viscosity of omalizumab (176 cP) was reduced 10.7- and 2.2-fold by Fc modifications for half-life extension (M252Y:S254T:T256E) and aglycosylation (N297G), respectively. Related single mutations (S254T and T256E) each reduced the viscosity of omalizumab by ~6-fold. An alternative half-life extension Fc mutant (M428L:N434S) had the opposite effect in increasing the viscosity of omalizumab by 1.5-fold. The low viscosity of trastuzumab (8.6 cP) was unchanged or increased by ≤2-fold by the different Fc variants. Molecular dynamics simulations provided mechanistic insight into the impact of Fc mutations in modulating electrostatic and hydrophobic surface properties as well as conformational stability of the Fc. This study demonstrates that high viscosity of some IgG1 antibodies can be mitigated by Fc mutations, and thereby offers an additional tool to help design future antibody therapeutics potentially suitable for subcutaneous delivery.
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  • 文章类型: Journal Article
    电化学氮还原(E-NRR)是产生绿色NH3最有前途的方法之一。然而,稀缺的氨产量和法拉第效率(FE)仍然限制了它们的大规模使用。因此,努力集中在不同的E-NRR催化剂结构和配方上。在目前的战略中,分子电催化剂,如金属卟啉作为一个令人鼓舞的选择,由于其平面结构有利于涉及金属中心的相互作用,负责氮气的吸附和活化。然而,卟啉的高疏水性限制了水性电解质-催化剂相互作用降低的产率。这项工作介绍了一类新的金属卟啉基催化剂,带有亲水性三(乙二醇)单甲醚链(金属=Cu(II)和CoII)。实验结果表明,亲水链的存在显着提高了氨的产率和FE,支持富有成效的催化剂-电解质相互作用的相关性。这项研究还调查了使用疏水性支链烷基链进行比较,相对于未取代的金属卟啉产生类似的性能,作为参考,进一步证实,携带外围亲水取代基的电催化剂的适当设计能够改善装置在产生绿氨中的性能。
    Electrochemical nitrogen reduction (E-NRR) is one of the most promising approaches to generate green NH3. However, scarce ammonia yields and Faradaic efficiencies (FE) still limit their use on a large scale. Thus, efforts are focusing on different E-NRR catalyst structures and formulations. Among present strategies, molecular electrocatalysts such as metal-porphyrins emerge as an encouraging option due to their planar structures which favor the interaction involving the metal center, responsible for adsorption and activation of nitrogen. Nevertheless, the high hydrophobicity of porphyrins limits the aqueous electrolyte-catalyst interaction lowering yields. This work introduces a new class of metal-porphyrin based catalysts, bearing hydrophilic tris(ethyleneglycol) monomethyl ether chains (metal = Cu(II) and CoII)). Experimental results show that the presence of hydrophilic chains significantly increases ammonia yields and FE, supporting the relevance of fruitful catalyst-electrolyte interactions. This study also investigates the use of hydrophobic branched alkyl chains for comparison, resulting in similar performances with respect to the unsubstituted metal-porphyrin, taken as a reference, further confirming that the appropriate design of electrocatalysts carrying peripheral hydrophilic substituents is able to improve device performances in the generation of green ammonia.
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  • 文章类型: Journal Article
    目的:具有不同界面行为的沥青烯亚组分可能在稳定油水乳液中起不同的作用。
    方法:在这项工作中,将整个沥青质分为界面活性沥青质(IAA)和界面非活性沥青质(INAA)。采用先进的纳米机械技术,我们探索了构图,形态学,尺寸,吸附,以及IAA和INAA的界面行为。
    结果:IAA表现出高且不均匀分布的氧含量,区别于INAA。在甲苯中,IAA和INAA的直径约为60nm和6nm,分别。当不可逆地吸附在云母表面时,IAA和INAA薄膜的厚度测量为~5.5nm或1nm,分别;而在甲苯溶液中,IAA和INAA的薄膜厚度达到〜46nm和3.1nm,分别。IAA表现出优越的界面活性,以及与水-甲苯界面处的INAA相比的弹性/粘性模量。定量的表面力测量表明,IAA稳定水滴在甲苯中的浓度仅为10mg/L,而INAA需要100mg/L的较高浓度。这项工作首次全面研究了沥青质亚馏分的吸附和界面行为,并为乳液的沥青质稳定机理提供了有用的见解。
    OBJECTIVE: Asphaltenes subfractions with distinct interfacial behaviors may play different roles in stabilizing oil-water emulsions.
    METHODS: In this work, whole asphaltenes were separated into interfacially active asphaltenes (IAA) and interfacially non-active asphaltenes (INAA). Employing advanced nanomechanical techniques, we have explored the compositions, morphologies, sizes, adsorption, and interfacial behaviors of IAA and INAA.
    RESULTS: IAA exhibits a high and unevenly distributed oxygen content, distinguishing it from INAA. In toluene, the diameters of IAA and INAA are about 60 nm and 6 nm, respectively. When adsorbed irreversibly on mica surfaces, the thickness of the IAA and INAA film was measured at ∼5.5 nm or 1 nm, respectively; while in a toluene solution, the film thickness reached ∼46 nm and 3.1 nm for IAA and INAA, respectively. IAA demonstrates superior interfacial activity, and elastic/viscous moduli compared to INAA at the water-toluene interface. Quantified surface force measurements reveal that IAA stabilizes water droplets in toluene at a concentration of only 10 mg/L, while INAA requires a higher concentration of 100 mg/L. This work provides the first comprehensive investigation into the adsorption and interfacial behaviors of asphaltene subfractions and provides useful insights into the asphaltenes-stabilization mechanism of emulsions.
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