immune therapy

免疫治疗
  • 文章类型: Journal Article
    心力衰竭(HF)是多种心血管疾病的晚期病症。癌症是世界范围内的致命疾病。HF和癌症之间的关系仍然知之甚少。基因表达Omnibus数据库用于下载356例肥厚型心肌病诱导的HF和非HF患者的RNA测序数据。通过加权相关网络分析(WGCNA)建立共表达网络,以鉴定HF和癌症的hub基因。进行Cox风险分析以预测泛癌症中HFhub基因的预后风险。通过基因本体论(GO)和京都基因和基因组百科全书(KEGG)的分析,将HF与免疫应答途径联系起来。在泛癌中,4种hub基因的表达水平与CD8T细胞的浸润呈正相关。4个hub基因在几种癌症中被鉴定为有益的预后因子。Western印迹和实时聚合酶链反应验证了GZMM的高表达,与对照组相比,患有HF的小鼠和患者中的NKG7和ZAP70。我们的研究强调了HF和癌症的共同免疫发病机制,并为开发新的治疗策略提供了有价值的见解。为改善HF和癌症的管理和治疗结果提供了新的机会。
    Heart failure (HF) is a terminal condition of multiple cardiovascular disorders. Cancer is a deadly disease worldwide. The relationship between HF and cancer remains poorly understood. The Gene Expression Omnibus database was used to download the RNA sequencing data of 356 patients with hypertrophic cardiomyopathy-induced HF and non-HF. A co-expression network was established through the weighted correlation network analysis (WGCNA) to identify hub genes of HF and cancer. Cox risk analysis was performed to predict the prognostic risks of HF hub genes in pan-cancer. HF was linked to immune response pathway by the analysis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). A positive correlation was observed between the expression levels of 4 hub genes and the infiltration of CD8+T-cells in pan-cancer. 4 hub genes were identified as beneficial prognostic factors in several cancers. Western blotting and real-time polymerase chain reaction validated the high expression of GZMM, NKG7, and ZAP70 in both mice and patients with HF compared to control groups. Our study highlights the shared immune pathogenesis of HF and cancer and provides valuable insights for developing novel therapeutic strategies, offering new opportunities for improving the management and treatment outcomes of both HF and cancer.
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  • 文章类型: Journal Article
    针对不同系统肿瘤的免疫检查点抑制剂(ICI)疗法由于其特异性高、副作用小的治疗特点,取得了显著的成果,改变了肿瘤治疗的现状。免疫检查点程序性死亡1/程序性细胞死亡配体1(PD-1/PD-L1)轴在肿瘤细胞的免疫逃逸中起着至关重要的作用。因此,已成为肿瘤免疫治疗的关键靶点。因此,为了完善对PD-1/PD-L1轴潜在调节因素的研究,为了理解和说明肿瘤ICI治疗机制,是一个重要的目标。此外,ncRNA已被证实可以调节肿瘤免疫微环境中的PD-1/PD-L1轴,从而调节肿瘤发生和发展。ncRNA可以通过调节PD-L1表达来改善或降低ICI治疗的功效。本文旨在探讨ncRNA在ICI治疗中调节PD-1/PD-L1轴的作用机制。为不同系统的肿瘤提供更有效的免疫疗法。
    Immune checkpoint inhibitor (ICI) therapies for tumors of different systems have attained significant achievements and have changed the current situation of tumor treatment due to their therapeutic characteristics of high specificity and low side effects. The immune checkpoint Programmed death 1/Programmed cell death-Ligand 1 (PD-1/PD-L1) axis exerts a vital role in the immune escape of tumor cells. As a result, it has become a key target for tumor immunotherapy. Therefore, to perfect research into potential regulatory factors for the PD-1/PD-L1 axis, in order to understand and illustrate tumor ICI therapy mechanisms, is a significant goal. Moreover, ncRNA has been verified to regulate the PD-1/PD-L1 axis in the tumor immune microenvironment to regulate tumor genesis and development. ncRNAs can improve or decrease the efficacy of ICI therapy by modulating PD-L1 expression. This review aimed to investigate the mechanisms of action of ncRNA in regulating the PD-1/PD-L1 axis in ICI therapy, to provide more efficient immunotherapy for tumors of different systems.
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  • 文章类型: Journal Article
    设计了一系列新型的2-芳基甲氧基-4-(2-氟甲基-联苯-3-基甲氧基)苄胺衍生物,合成,并评估了其作为PD-1/PD-L1抑制剂的体外和体内抗肿瘤作用。首先,使用均相时间分辨荧光(HTRF)分析评估了这些化合物阻断PD-1/PD-L1免疫检查点的能力.两种化合物可以强烈阻断PD-1/PD-L1的相互作用,IC50值小于10nM,特别是,化合物HD10通过抑制PD-1/PD-L1相互作用表现出显著的临床潜力,IC50值为3.1nM。进一步的微尺度热泳(MST)分析表明,HD10与PD-L1蛋白具有很强的相互作用。与PD-L1蛋白复合物中的HD10的共晶体结构(2.7µ)分析显示,该化合物与目标PD-L1二聚体之间具有很强的亲和力。这为进一步的体内外研究提供了坚实的理论基础。接下来,一个典型的基于细胞的实验表明,HD10可以显著阻止hPD-1293T细胞与人重组PD-L1蛋白的相互作用,有效恢复T细胞功能,并以剂量依赖性方式促进IFN-γ分泌。此外,HD10在PD-1/PD-L1人源化小鼠模型中有效抑制肿瘤生长(TGI=57.31%),无明显毒性。流式细胞术,qPCR,和免疫组织化学数据表明,HD10通过激活体内免疫系统来抑制肿瘤生长。基于这些结果,HD10似乎是一个有希望的临床候选药物,需要进一步研究.
    A series of novel 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine derivatives was designed, synthesized, and evaluated for their antitumor effects as PD-1/PD-L1 inhibitors both in vitro and in vivo. Firstly, the ability of these compounds to block the PD-1/PD-L1 immune checkpoint was assessed using the homogeneous time-resolved fluorescence (HTRF) assay. Two of the compounds can strongly block the PD-1/PD-L1 interaction, with IC50 values of less than 10 nM, notably, compound HD10 exhibited significant clinical potential by inhibiting the PD-1/PD-L1 interaction with an IC50 value of 3.1 nM. Further microscale thermophoresis (MST) analysis demonstrated that HD10 had strong interaction with PD-L1 protein. Co-crystal structure (2.7 Å) analysis of HD10 in complex with the PD-L1 protein revealed a strong affinity between the compound and the target PD-L1 dimer. This provides a solid theoretical basis for further in vitro and in vivo studies. Next, a typical cell-based experiment demonstrated that HD10 could remarkably prevent the interaction of hPD-1 293 T cells from human recombinant PD-L1 protein, effectively restoring T cell function, and promoting IFN-γ secretion in a dose-dependent manner. Moreover, HD10 was effective in suppressing tumor growth (TGI = 57.31 %) in a PD-1/PD-L1 humanized mouse model without obvious toxicity. Flow cytometry, qPCR, and immunohistochemistry data suggested that HD10 inhibits tumor growth by activating the immune system in vivo. Based on these results, it seems likely that HD10 is a promising clinical candidate that should be further investigated.
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  • 文章类型: Journal Article
    背景:BRAF中缺乏突变的黑色素瘤,NRAS和NF1通常被称为“三重野生型”(tWT)黑素瘤。它们占所有黑素瘤的5-10%,并且在临床特征和对治疗的反应方面仍未得到充分表征。这项研究调查了迄今为止最大的多中心tWT黑素瘤。
    方法:对DeCOG的前瞻性多中心研究ADOREG/TRIM的3109个黑色素瘤组织样本进行了TERT启动子和29个黑色素瘤相关基因的靶向下一代测序,揭示了292例患有tWT黑色素瘤的患者。分析了临床特征和突变模式。作为亚组分析,我们分析了在AJCCIV期接受抗CTLA4+抗PD1或抗PD1单药治疗作为一线治疗的141例tWT黑色素瘤患者.
    结果:184例皮肤黑素瘤患者,56例粘膜黑素瘤,包括34例肢端黑色素瘤和18例不明原因黑色素瘤(MUP)。可以在33.2%的所有黑素瘤和70.5%的所有tWT黑素瘤中鉴定出TERT启动子突变,每个样品具有少于三个突变。对于141例IV期患者,在一线抗CTLA4加抗PD1治疗后,mPFS独立于黑色素瘤类型为6.2个月(95%CI:4-9),mOS为24.8个月(95%CI:14.2-53.4)。一线抗PD1单药治疗后,mPFS为4个月(95CI:2.9-8.5),mOS为29.18个月(95%CI:17.5-46.2)。
    结论:虽然TERT启动子突变和TMB等已知预后因素在接受抗CTLA4联合抗PD1联合治疗或抗PD1单药治疗作为一线治疗的患者中分布均匀,我们没有发现延长的mPFS或mOS。对于这两种治疗概念,mPFS和mOS比报道的已知癌基因突变的黑素瘤短得多。
    BACKGROUND: Melanomas lacking mutations in BRAF, NRAS and NF1 are frequently referred to as \"triple wild-type\" (tWT) melanomas. They constitute 5-10 % of all melanomas and remain poorly characterized regarding clinical characteristics and response to therapy. This study investigates the largest multicenter collection of tWT-melanomas to date.
    METHODS: Targeted next-generation sequencing of the TERT promoter and 29 melanoma-associated genes were performed on 3109 melanoma tissue samples of the prospective multicenter study ADOREG/TRIM of the DeCOG revealing 292 patients suffering from tWT-melanomas. Clinical characteristics and mutational patterns were analyzed. As subgroup analysis, we analyzed 141 tWT-melanoma patients receiving either anti-CTLA4 plus anti-PD1 or anti PD1 monotherapy as first line therapy in AJCC stage IV.
    RESULTS: 184 patients with cutaneous melanomas, 56 patients with mucosal melanomas, 34 patients with acral melanomas and 18 patients with melanomas of unknown origin (MUP) were included. A TERT promoter mutation could be identified in 33.2 % of all melanomas and 70.5 % of all tWT-melanomas harbored less than three mutations per sample. For the 141 patients with stage IV disease, mPFS independent of melanoma type was 6.2 months (95 % CI: 4-9) and mOS was 24.8 months (95 % CI: 14.2-53.4) after first line anti-CTLA4 plus anti-PD1 therapy. After first-line anti-PD1 monotherapy, mPFS was 4 months (95 %CI: 2.9-8.5) and mOS was 29.18 months (95 % CI: 17.5-46.2).
    CONCLUSIONS: While known prognostic factors such as TERT promoter mutations and TMB were equally distributed among patients who received either anti-CTLA4 plus anti-PD1 combination therapy or anti-PD1 monotherapy as first line therapy, we did not find a prolonged mPFS or mOS in either of those. For both therapy concepts, mPFS and mOS were considerably shorter than reported for melanomas with known oncogene mutations.
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  • 文章类型: Journal Article
    背景:染色质调节因子(CRs)能够引起表观遗传学改变,这是癌症的重要特征。然而,CRs在控制透明细胞肾细胞癌(ccRCC)中的功能尚不清楚。本研究旨在发现ccRCC中CRs的预后特征,并阐明CRs相关基因在肿瘤微环境(TME)中的作用。
    方法:从癌症基因组图谱(TCGA)和UCSCXena平台检索表达谱和相关临床注释,以获得无进展生存期(PFS)数据。R包“limma”用于鉴定差异表达的CR。使用LASSO-Cox分析建立了基于五个CR的预测模型。使用K-M曲线验证了模型的预测能力和适用性。ROC曲线,列线图,与其他型号的比较,分层生存分析,并与ICGC队列进行验证。进行GO和GSEA分析以研究区分低风险和高风险组的机制。使用肿瘤突变负荷(TMB)评估免疫原性,推断免疫细胞浸润,使用免疫表型分析以及人类白细胞抗原(HLA)和检查点基因的表达模式对免疫治疗进行了评估.使用log2|FC|>1和FDR<0.05鉴定低和高风险评分组之间的差异表达CR(DECR)。AURKB,高风险DECR之一,也是我们预后模型的组成部分,选择进行进一步分析。
    结果:我们构建了5个CRs签名,在ccRCC中表现出很强的生存预测能力和更大的适用性。高风险评分组的免疫原性和免疫浸润升高与不良预后相关。免疫治疗在高风险评分组中更有效,和某些化疗药物,包括顺铂,多西他赛,博来霉素,和阿西替尼,具有较低的IC50值。我们的研究表明,AURKB对于高风险Score组的免疫原性和免疫浸润至关重要。
    结论:我们的研究仅使用5个CRs就建立了可靠的预后预测模型。我们发现AURKB促进免疫原性和免疫浸润。该研究为ccRCC的预后生物标志物和治疗策略的开发提供了关键支持。
    BACKGROUND: Chromatin regulators (CRs) are capable of causing epigenetic alterations, which are significant features of cancer. However, the function of CRs in controlling Clear Cell Renal Cell Carcinoma (ccRCC) is not well understood. This research aims to discover a CRs prognostic signature in ccRCC and to elucidate the roles of CRs-related genes in tumor microenvironment (TME).
    METHODS: Expression profiles and relevant clinical annotations were retrieved from the Cancer Genome Atlas (TCGA) and UCSC Xena platform for progression-free survival (PFS) data. The R package \"limma\" was used to identify differentially expressed CRs. A predictive model based on five CRs was developed using LASSO-Cox analysis. The model\'s predictive power and applicability were validated using K-M curves, ROC curves, nomograms, comparisons with other models, stratified survival analyses, and validation with the ICGC cohort. GO and GSEA analyses were performed to investigate mechanisms differentiating low and high riskScore groups. Immunogenicity was assessed using Tumor Mutational Burden (TMB), immune cell infiltrations were inferred, and immunotherapy was evaluated using immunophenogram analysis and the expression patterns of human leukocyte antigen (HLA) and checkpoint genes. Differentially expressed CRs (DECRs) between low and high riskScore groups were identified using log2|FC|> 1 and FDR < 0.05. AURKB, one of the high-risk DECRs and a component of our prognostic model, was selected for further analysis.
    RESULTS: We constructed a 5 CRs signature, which demonstrated a strong capacity to predict survival and greater applicability in ccRCC. Elevated immunogenicity and immune infiltration in the high riskScore group were associated with poor prognosis. Immunotherapy was more effective in the high riskScore group, and certain chemotherapy medications, including cisplatin, docetaxel, bleomycin, and axitinib, had lower IC50 values. Our research shows that AURKB is critical for the immunogenicity and immune infiltration of the high riskScore group.
    CONCLUSIONS: Our study produced a reliable prognostic prediction model using only 5 CRs. We found that AURKB promotes immunogenicity and immune infiltration. This research provides crucial support for the development of prognostic biomarkers and treatment strategies for ccRCC.
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  • 文章类型: Journal Article
    不变自然杀伤T细胞疗法是用于癌症治疗的免疫疗法的新兴平台。这种独特的细胞群是用于癌症治疗的细胞疗法的有希望的候选者,因为其针对CD1d阳性癌症的固有细胞毒性以及其诱导宿主CD8T细胞交叉引发的能力。大量证据支持iNKT细胞可以调节肿瘤微环境中的粒单核细胞群体以改善免疫失调从而拮抗肿瘤进展。iNKT细胞还可以通过几种机制保护移植物抗宿主病(GVHD),包括调节性T细胞(Treg)的扩增。最终,基于iNKT细胞的疗法可以保留抗肿瘤活性,同时提供针对GVHD的保护。因此,这些生物学特性使iNKT细胞成为多种血液系统恶性肿瘤和可能的实体瘤的“现成”疗法。此外,嵌合抗原受体(CAR)的引入可以进一步靶向iNKT细胞并增强功能。我们预计,改进的载体设计和其他策略,如小分子或免疫检查点抑制剂的组合治疗可以提高CARiNKT的体内持久性。功能和利用抗肿瘤活性以及减少iNKT细胞功能障碍或耗尽。
    Invariant Natural Killer T cell therapy is an emerging platform of immunotherapy for cancer treatment. This unique cell population is a promising candidate for cell therapy for cancer treatment because of its inherent cytotoxicity against CD1d positive cancers as well as its ability to induce host CD8 T cell cross priming. Substantial evidence supports that iNKT cells can modulate myelomonocytic populations in the tumor microenvironment to ameliorate immune dysregulation to antagonize tumor progression. iNKT cells can also protect from graft-versus-host disease (GVHD) through several mechanisms, including the expansion of regulatory T cells (Treg). Ultimately, iNKT cell-based therapy can retain antitumor activity while providing protection against GVHD simultaneously. Therefore, these biological properties render iNKT cells as a promising \"off-the-shelf\" therapy for diverse hematological malignancies and possible solid tumors. Further the introduction of a chimeric antigen recetor (CAR) can further target iNKT cells and enhance function. We foresee that improved vector design and other strategies such as combinatorial treatments with small molecules or immune checkpoint inhibitors could improve CAR iNKT in vivo persistence, functionality and leverage anti-tumor activity along with the abatement of iNKT cell dysfunction or exhaustion.
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  • 文章类型: Journal Article
    RNA在肿瘤发生中起重要作用。RNA的变化可能导致生物学功能的变化。作为最广泛存在的RNA修饰,N7-甲基鸟苷(m7G)甲基化修饰在肿瘤进展中发挥不可或缺的功能。肝细胞癌(HCC)是全球范围内对人类健康的最大威胁之一。低检出率仍然是晚期疾病进展的主要原因。因此,在HCC中寻找用于预后预测和免疫治疗应答的重要生物标志物是有价值和迫切需要的。
    从癌症基因组图谱(TCGA)数据库和基因表达综合(GEO)数据库获得RNA表达和临床数据。通过共识聚类完成不同亚型的筛选。用R软件进行不同的表达。通过蛋白质印迹(WB)方法验证结果。利用最小绝对收缩和选择算子(LASSO)分析鉴定具有HCC预后潜力的基因。借助我们计算的风险评分建立了预后模型。使用GeneMANIA数据库进行相关基因筛选和蛋白质-蛋白质相互作用(PPI)网络构建。使用注释数据库执行功能注释,可视化和集成发现(DAVID)数据库。此外,用R软件对关键基因和免疫浸润状态进行基因集富集分析(GSEA)。最后,免疫浸润采用cibersort方法和单样品GSEA(ssGSEA)方法进行。通过肿瘤免疫功能障碍和排除数据库(TIDE)和GEO数据库中的免疫治疗队列验证了免疫治疗的反应。
    我们发现与m7GRNA修饰相关的两种不同亚型和与m7GRNA修饰相关的四种基因在TCGA-肝细胞癌(TCGA-LIHC)数据库中差异表达。此外,根据LASSO检查这四个基因在HCC患者预后中的价值,我们选择了三个基因,包括WDR4,AGO2和NCBP2,作为预后相关基因。以这三个基因的表达为前提,我们构建了风险评分模型和列线图,以预测HCC患者的预后.我们进行了功能注释,并基于三个基因(WDR4,NCBP2和AGO2)创建了PPI网络。使用R软件,我们进行了GSEA和免疫调节分析.最后,我们预测了基因表达与免疫治疗反应之间的关系。
    我们的研究表明,m7GRNA修饰亚型的高表达与不良预后和免疫反应有关。WDR4、AGO2和NCBP2是m7GRNA修饰的关键调节因子,其可以是可用于治疗HCC的临床上有希望的生物标志物。此外,我们的风险评分模型被证明与HCC患者的OS密切相关.
    UNASSIGNED: RNA plays an important role in tumorigenesis. Changes in RNA may cause changes in the biological function. The N7-methylguanosine (m7G) methylation modification performs an integral function in tumor progression as the most widely existed RNA modification. Hepatocellular carcinoma (HCC) is among the greatest threats to human health worldwide. Low detection rates remain the main cause of advanced disease progression. Therefore, finding significant biomarkers for prognosis prediction and immune therapy response in HCC is valuable and urgently needed.
    UNASSIGNED: RNA expression and clinical data were acquired from The Cancer Genome Atlas (TCGA) database and the Gene Expression Omnibus (GEO) database. Different subtypes screening was finished by consensus cluster. Different expression was performed by R software. The results were validated by western blot (WB) methods. Genes with HCC prognostic potential were identified utilizing least absolute shrinkage and selection operator (LASSO) analyses. A prognosis model was established with the help of the risk score that we calculated. Related genes screening and protein-protein interactions (PPI) network construction were performed using the GeneMANIA database. Functional annotation was performed using the Database for Annotation, Visualization and Integrated Discovery (DAVID) databases. In addition, gene set enrichment analysis (GSEA) of key genes and immune infiltration status were both done by R software. Finally, the immune infiltration was performed by cibersort method and single sample GSEA (ssGSEA) method. The response of immune therapy was validated by Tumor Immune Dysfunction and Exclusion database (TIDE) and the immune therapy cohort in GEO database.
    UNASSIGNED: We found that two different subtypes related with m7G RNA modification and four genes associated with m7G RNA modification were differentially expressed in the TCGA-Liver Hepatocellular Carcinoma (TCGA-LIHC) database. Additionally, to examine the value of these four genes in the HCC patients\' prognoses according to the LASSO, we selected three genes, including WDR4, AGO2, and NCBP2, as prognostic related genes. Premised on the expression of these three genes, a risk score model and nomogram were constructed to provide a prediction of the HCC patients\' prognoses. We performed functional annotation and created a PPI network based on the three genes (WDR4, NCBP2, and AGO2). Using R software, we performed the GSEA and immune regulation analyses. Finally, we predicted the relationship between the gene expression and the response of immune therapy.
    UNASSIGNED: Our study suggests that high expression of m7G RNA modification subtype is related with poor prognosis and immune response. WDR4, AGO2, and NCBP2 are key regulators of m7G RNA modification which can be clinically promising biomarkers that can be used to treat HCC. In addition, our risk score model was shown to have a strong link to OS in patients with HCC.
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  • 文章类型: Journal Article
    在固体和液体恶性肿瘤中miR-155水平的升高与疾病的侵袭性相关。在这份手稿中,我们显示miR-155靶向编码IcosL的转录本,诱导型T细胞共刺激因子(Icos)的配体,从而损害T细胞识别和消除恶性细胞的能力。我们特别发现miR-155在Eµ-miR-155小鼠B细胞中的过表达导致IcosL表达丧失,因为它们向恶性肿瘤发展。同样,在miR-155表达受Cre-Tet-OFF系统控制的小鼠中,miR-155诱导导致缺乏IcosL表达的恶性浸润。相反,关闭miR-155导致肿瘤消退,并出现由IcosL阳性B细胞和Icos阳性T细胞形成免疫突触的浸润物.因此,我们接下来改造恶性细胞来表达IcosL,以确定IcosL表达是否会增加细胞毒性T细胞的肿瘤浸润并减少肿瘤进展。的确,在注射入同系C57BL6小鼠之前,在MC38鼠结肠癌细胞中过表达编码IcosL的cDNA减少了肿瘤大小并增加了肿瘤内CD8+T细胞浸润,与表达IcosL的MC38细胞形成突触。我们的结果强调了这样一个事实,通过靶向IcosL转录本,miR-155损害细胞毒性T细胞对肿瘤的浸润,以及IcosL对增强针对恶性细胞的免疫反应的重要性。这些发现应该导致更有效的抗癌治疗的基础上保持发展,增加,或通过恶性细胞恢复IcosL表达,同时损害miR-155的活性。
    Elevated levels of miR-155 in solid and liquid malignancies correlate with aggressiveness of the disease. In this manuscript, we show that miR-155 targets transcripts encoding IcosL, the ligand for Inducible T-cell costimulator (Icos), thus impairing the ability of T cells to recognize and eliminate malignant cells. We specifically found that overexpression of miR-155 in B cells of Eµ-miR-155 mice causes loss of IcosL expression as they progress toward malignancy. Similarly, in mice where miR-155 expression is controlled by a Cre-Tet-OFF system, miR-155 induction led to malignant infiltrates lacking IcosL expression. Conversely, turning miR-155 OFF led to tumor regression and emergence of infiltrates composed of IcosL-positive B cells and Icos-positive T cells forming immunological synapses. Therefore, we next engineered malignant cells to express IcosL, in order to determine whether IcosL expression would increase tumor infiltration by cytotoxic T cells and reduce tumor progression. Indeed, overexpressing an IcosL-encoding cDNA in MC38 murine colon cancer cells before injection into syngeneic C57BL6 mice reduced tumor size and increased intratumor CD8+ T cell infiltration, that formed synapses with IcosL-expressing MC38 cells. Our results underscore the fact that by targeting IcosL transcripts, miR-155 impairs the infiltration of tumors by cytotoxic T cells, as well as the importance of IcosL on enhancing the immune response against malignant cells. These findings should lead to the development of more effective anticancer treatments based on maintaining, increasing, or restoring IcosL expression by malignant cells, along with impairing miR-155 activity.
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    翻译后修饰(PTM)显着影响各种肿瘤状况的发病机理和进展。然而,关于PTM相关基因(PTMRGs)作为预测特定患者生存的肿瘤生物标志物的潜力的研究有限.
    本研究中使用的数据集从TARGET和GEO存储库获得,分别。利用LASSOCox回归方法构建基因标签。GSEA和GO用于鉴定与风险基因相关的枢纽途径。通过CCK-8测定的实施,验证了骨肉瘤(OS)细胞系中风险基因的功能,细胞周期分析,和免疫荧光分析。
    最终确定了两种不同的PTM模式和基因簇。在两种不同的PTM模式和基因簇之间发现患者的预后存在显着差异,在TME免疫细胞浸润的功能富集和景观方面也是如此。此外,我们检查了两个外部免疫治疗队列,确定低风险组的患者更有可能从免疫治疗中获益.此外,我们使用单细胞分析在不同细胞中定位了签名中基因的表达。最后,CCK-8测定,细胞周期分析,和免疫荧光分析用于证实RAD21在OS中表达和起作用。
    总而言之,这项研究首次阐明了PTM与OS免疫浸润景观之间的潜在联系,并为OS晚期患者精确选择治疗策略提供了新的评估方案.
    UNASSIGNED: Post-translational modifications (PTM) significantly influence the pathogenesis and progression of diverse neoplastic conditions. Nevertheless, there has been limited research focusing on the potential of PTM-related genes (PTMRGs) as tumor biomarkers for predicting the survival of specific patients.
    UNASSIGNED: The datasets utilized in this research were obtained from the TARGET and GEO repositories, respectively. The gene signature was constructed through the utilization of LASSO Cox regression method. GSEA and GO was used to identify hub pathways associated with risk genes. The functionality of risk genes in osteosarcoma (OS) cell lines was verified through the implementation of the CCK-8 assay, cell cycle analysis, and immunofluorescence assay.
    UNASSIGNED: Two distinct PTM patterns and gene clusters were finally determined. Significant differences in the prognosis of patients were found among two different PTM patterns and gene clusters, so were in the function enrichment and the landscape of TME immune cell infiltration. Moreover, we examined two external immunotherapy cohorts and determining that patients in the low-risk group was more likely to profit from immunotherapy. In addition, we mapped the expression of the genes in the signature in distinct cells using single-cell analysis. Finally, CCK-8 assay, cell cycle analysis, and immunofluorescence assay were utilized to confirm that RAD21 was expressed and functioned in OS.
    UNASSIGNED: In conclusion, this study elucidated the potential link between PTM and immune infiltration landscape of OS for the first time and provided a new assessment protocol for the precise selection of treatment strategies for patients with advanced OS.
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  • 文章类型: Journal Article
    背景:蛋白酶体组装伴侣3(PSMG3),蛋白酶体的一个亚基,已发现与肺癌有关。然而,PSMG3在其他癌症中的作用尚未阐明.本研究的目的是探讨PSMG3在泛癌症中的免疫作用,并证实其在肝细胞肝癌(LIHC)中的致癌意义。
    方法:我们使用来自癌症基因组图谱(TCGA)和基因型组织表达(GTEx)数据库的数据检查了PSMG3在各种癌症类型中的差异表达。我们调查了PSMG3的预后价值,并检查了其与肿瘤突变负荷(TMB)的关系,微卫星不稳定性(MSI),和免疫浸润。进行功能富集分析以探索PSMG3的潜在分子机制。为了阐明PSMG3的生物学功能,我们使用肝癌细胞系进行了体外实验。
    结果:PSMG3在大多数癌症中高表达。PSMG3的高表达值与不良预后密切相关。我们观察到PSMG3和TMB之间的相关性,和MSI免疫浸润。PSMG3可能参与代谢重编程,细胞周期,和PPAR途径。PSMG3的过表达促进了细胞增殖,迁移,和肝癌细胞的侵袭能力。
    结论:我们的研究表明PSMG3是多种癌症的关键癌基因。PSMG3有助于泛癌症的进展和免疫浸润,尤其是LIHC。
    BACKGROUND: Proteasome assembly chaperone 3 (PSMG3), a subunit of proteasome, has been found to be associated with lung cancer. However, the role of PSMG3 in other cancers has not been elucidated. The objective of this study was to explore the immune role of PSMG3 in pan-cancer and confirm the oncogenic significance in liver hepatocellular carcinoma (LIHC).
    METHODS: We examined the differential expression of PSMG3 across various cancer types using data from The Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases. We investigated the prognostic value of PSMG3 and examined its relationship with tumor mutation burden (TMB), microsatellite instability (MSI), and immune infiltration. The functional enrichment analysis was performed to explore the potential molecular mechanism of PSMG3. To elucidate the biological function of PSMG3, we conducted in vitro experiments using liver cancer cell lines.
    RESULTS: PSMG3 was highly expressed in most cancers. The high PSMG3 expression value of PSMG3 was closely related to poor prognosis. We observed correlations between PSMG3 and TMB, and MSI immune infiltration. PSMG3 may be involved in metabolic reprogramming, cell cycle, and PPAR pathways. The over-expression of PSMG3 promoted the proliferation, migration, and invasion capabilities of liver cancer cells.
    CONCLUSIONS: Our study demonstrated that PSMG3 was a pivotal oncogene in multiple cancers. PSMG3 contributed to the progression and immune infiltration in pan-cancer, especially in LIHC.
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