ice

ICE
  • 文章类型: Journal Article
    检测液体到冰的转变对于许多应用来说是一个重要的挑战。在本文中,提出并测试了一种多参数表征液到冰相变的方法。该方法基于体声波(BAW)的基本特性。垂直剪切(SV)或水平剪切(SH)极化的BAWs不能在液体中传播,只有在固体如冰。具有纵向(L)极化的BAWs,然而,可以在液体和固体中传播,但是速度和衰减不同。L-BAW和SV-BAW的速度和衰减是在冰中使用诸如时间延迟和波幅等参数在1-37MHz的频率范围内测量的。基于这些测量,确定了瑞利表面声波的相关参数和冰的泊松模量。还沿其长度检测冰样品的均匀性。已经开发并测试了双传感器,以同时分析两种液体中的两相变。使用蒸馏水和0.9%NaCl水溶液作为实例。
    The detection of the liquid-to-ice transition is an important challenge for many applications. In this paper, a method for multi-parameter characterization of the liquid-to-ice phase transition is proposed and tested. The method is based on the fundamental properties of bulk acoustic waves (BAWs). BAWs with shear vertical (SV) or shear horizontal (SH) polarization cannot propagate in liquids, only in solids such as ice. BAWs with longitudinal (L) polarization, however, can propagate in both liquids and solids, but with different velocities and attenuations. Velocities and attenuations for L-BAWs and SV-BAWs are measured in ice using parameters such as time delay and wave amplitude at a frequency range of 1-37 MHz. Based on these measurements, relevant parameters for Rayleigh surface acoustic waves and Poisson\'s modulus for ice are determined. The homogeneity of the ice sample is also detected along its length. A dual sensor has been developed and tested to analyze two-phase transitions in two liquids simultaneously. Distilled water and a 0.9% solution of NaCl in water were used as examples.
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  • 文章类型: Journal Article
    背景:近年来,全球对各种沙门氏菌血清型多药耐药性(MDR)增加的关注显著增加.然而,关于MDR乙型副伤寒沙门氏菌的报告仍然很少,更不用说广泛耐药(XDR)菌株了。
    方法:在这项回顾性研究中,调查了江苏省近10年来的乙型副伤寒沙门菌分离株,然后对菌株进行测序和生物信息学分析。
    结果:共鉴定出27株乙型副伤寒沙门菌,其中主要的STS是ST42(11),ST86(10),和ST2814(5)。在这些菌株中,我们发现了4株以前未报道的XDR乙型副伤寒沙门氏菌ST2814株(4/5)。这些令人震惊的耐药分离株对沙门氏菌治疗甚至最后的替加环素治疗的所有三种主要抗生素类别均具有耐药性。生物信息学分析显示,这些XDR菌株所携带的质粒与来自中国及周边地区的不同沙门氏菌血清型和大肠杆菌之间具有高度相似性。值得注意的是,这四个质粒通过调节AcrAB-TolC泵携带负责多种抗生素抗性的ramAp基因,主要来自中国。此外,还鉴定了染色体上具有ICE的独特的MDRST42(1/11)菌株。此外,全球ST42/ST2814分离株的系统发育分析强调了这些菌株的区域特异性,江苏分离株与国内分离株聚集在一起,XDRST2814形成了一个独特的分支,表明适应当地的抗生素压力。
    结论:这项研究强调了密切监测MDR/XDR副伤寒沙门氏菌B的迫切需要,特别是江苏省新兴的ST2814菌株,有效遏制其传播,保护公众健康。此外,在“一个健康”的概念下,应加强对不同生态位和属的监测,以跟踪抗性基因和水平基因转移元件。
    BACKGROUND: In recent years, global concern over increasing multidrug resistance (MDR) among various Salmonella serotypes has grown significantly. However, reports on MDR Salmonella Paratyphi B remain scarce, let alone the extensively drug-resistant (XDR) strains.
    METHODS: In this retrospective study, we investigated the isolates of Salmonella Paratyphi B in Jiangsu Province over the past decade and carried out antimicrobial susceptibility tests, then the strains were sequenced and bioinformatics analyses were performed.
    RESULTS: 27 Salmonella Paratyphi B strains were identified, of which the predominant STs were ST42 (11), ST86 (10), and ST2814 (5). Among these strains, we uncovered four concerning XDR Salmonella Paratyphi B ST2814 strains (4/5) which were previously unreported. These alarmingly resistant isolates showed resistance to all three major antibiotic classes for Salmonella treatment and even the last resort treatment tigecycline. Bioinformatics analysis revealed high similarity between the plasmids harbored by these XDR strains and diverse Salmonella serotypes and Escherichia coli from China and neighboring regions. Notably, these four plasmids carried the ramAp gene responsible for multiple antibiotic resistance by regulating the AcrAB-TolC pump, predominantly originating from China. Additionally, a distinct MDR ST42(1/11) strain with an ICE on chromosome was also identified. Furthermore, phylogenetic analysis of global ST42/ST2814 isolates highlighted the regional specificity of these strains, with Jiangsu isolates clustering together with domestic isolates and XDR ST2814 forming a distinct branch, suggesting adaptation to local antibiotic pressures.
    CONCLUSIONS: This research underscores the pressing need for closely monitoring the MDR/XDR Salmonella Paratyphi B, particularly the emerging ST2814 strains in Jiangsu Province, to effectively curb its spread and protect public health. Moreover, surveillance should be strengthened across different ecological niches and genera to track resistance genes and horizontal gene transfer elements under the concept of \"ONE HEALTH\".
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  • 文章类型: Journal Article
    自然叶子上的特殊霜冻模式促使Yao等人。[Y.Yaoetal.,Proc.纳特.Acad.Sci.U.S.A.117,6323-6329(2020)]研究潜在的物理学。他们的工作揭示了为什么在波纹表面上,冰会在波峰上形成并干燥相邻的凹槽。在没有霜冻的情况下,相比之下,凹槽倾向于构成叶子上的生态位,其中微生物受到水分的限制比其他位置少。这里,我们表明,微生物能够在冰峰上形成之前使冰核化,可以改变结霜模式,使其具有优势。这种能力可能会在寒冷的干旱环境中驱动某些微生物与植物之间的联系。
    Particular frost patterns on natural leaves had prompted Yao et al. [Y. Yao et al., Proc. Natl. Acad. Sci. U.S.A. 117, 6323-6329 (2020)] to investigate the underlying physics. Their work revealed why on corrugated surfaces ice forms on crests and dries out adjacent grooves. In the absence of frost, in contrast, grooves tend to constitute niches on a leaf where microorganisms are less limited by moisture than in other locations. Here, we show that microorganisms able to nucleate ice before it forms on crests can modify the frosting pattern to their advantage. This ability might drive in cold arid environments the association between certain microorganisms and plants.
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  • 文章类型: Journal Article
    先前在散发性铜绿假单胞菌临床分离株中检测到FIM-1金属-β-内酰胺酶。这里,我们报告了FIM-1阳性铜绿假单胞菌,他们来自长期急性护理康复医院共用同一病房的两名患者.全基因组测序分析揭示了这些分离株的亲缘关系,属于与先前报道的不同的ST235亚谱系(进化枝8/14)。结果强调了FIM阳性菌株之间克隆多样性的发生及其在某些医疗机构中交叉传播的可能性。
    FIM-1 metallo-β-lactamase was previously detected in sporadic Pseudomonas aeruginosa clinical isolates. Here, we report on FIM-1-positive P. aeruginosa from two patients who had shared the same ward in a long-term acute care rehabilitation hospital. Whole-genome sequencing analysis revealed close relatedness of these isolates, which belonged to an ST235 sublineage (clade 8/14) different from those previously reported. Results highlighted the occurrence of clonal diversity among FIM-positive strains and the possibility of their cross-transmission in some healthcare settings.
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  • 文章类型: Journal Article
    目的:本研究的目的是定量和鉴定冰成核活性(INA)细菌的代谢产物,作为抗生物膜剂,对抗鱼类病原体如嗜水气单胞菌和无乳链球菌的生物膜。
    结果:冰核活性细菌,它们具有催化冰核形成的能力,在以前的研究中从雨水中分离出来,被使用。所有INA分离株都在几个试验中进行了测试,包括抗菌试验,使用链霉素作为阳性对照,在抗菌试验中没有发现阳性的分离株。至于群体猝灭测定,发现十分之四的分离株能够干扰紫罗兰色杆菌野生型的通讯系统,用作指示细菌。在下一个化验中,对所有10个分离株进行了生物膜抑制和破坏测试,并显示出抗生物膜活性,分离株A40对嗜水气单胞菌的抑制率最高,为33.49%,分离株A19对无乳链球菌的抑制率最高,为77.26%。C1对嗜水菌和无乳链球菌的破坏最高,百分比分别为32.11%和51.88%,分别。至于GC-MS分析,INA细菌的上清液含有生物活性化合物,如肌氨酸和脂肪酸,已知它们具有抗几种生物膜形成细菌的抗生物膜活性。通过16srRNA测序,鉴定的细菌来自泛菌,肠杆菌,和不动杆菌属。至于结论,测试的冰成核活性细菌代谢物在破坏和抑制生物膜生长方面对致病菌嗜水气单胞菌和无乳链球菌表现出阳性结果。
    OBJECTIVE: The aim of this study was to quantify and identify metabolites of Ice Nucleation Active (INA) bacteria as an anti-biofilm agent against biofilms of fish pathogens such as Aeromonas hydrophila and Streptococcus agalactiae.
    RESULTS: Ice nucleation active bacteria, which have the ability to catalyze ice nucleation, isolated from rainwater in previous studies, were used. All INA isolates were tested in several assays, including the antimicrobial test, which uses streptomycin as the positive control and none of the isolates were found positive in the antimicrobial test. As for the quorum quenching assay, it was found that four out of ten isolates were able to disturb the communication system in Chromobacterium violaceum wild type, which was used as the indicator bacteria. On the next assay, all ten isolates were tested for Biofilm Inhibition and Destruction and showed anti-biofilm activity with the highest percentage inhibition of 33.49% by isolate A40 against A. hydrophila and 77.26% by isolate A19 against S. agalactiae. C1 performed the highest destruction against A. hydrophila and S. agalactiae, with percentages of 32.11% and 51.88%, respectively. As for the GC-MS analysis, supernatants of INA bacteria contain bioactive compounds such as sarcosine and fatty acids, which are known to have antibiofilm activity against several biofilm-forming bacteria. Through 16s rRNA sequencing, identified bacteria are from the Pantoea, Enterobacter, and Acinetobacter genera. As for the conclusion, ice nucleation active bacteria metabolites tested showed positive results against pathogenic bacteria Aeromonas hydrophila and Streptococcus agalactiae in destructing and inhibiting biofilm growth.
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  • 文章类型: Journal Article
    多药耐药,由于获得性抗菌素抗性基因,在人畜共患病原体猪链球菌中的报道越来越多。这些抗性基因中的大多数由染色体移动遗传元件(MGEs)携带,特别是,整合和共轭要素(ICE)和整合和可移动性要素(IME)。ICE和IME经常形成串联或嵌套复合元素,这使得他们的身份识别变得困难。为了评估他们的流动性,有必要(i)选择合适的供体-受体对进行交配测定,(ii)进行PCR切除测试,以确认遗传元件能够作为环状中间体从染色体上切除,和(iii)通过进行交配测定来评估通过接合的遗传元件的转移。除了在猪链球菌菌株之间传播抗性基因,MGE可导致抗性基因在环境中和向致病菌传播。这种传播必须从一个健康的角度来考虑。
    Multidrug resistance, due to acquired antimicrobial resistance genes, is increasingly reported in the zoonotic pathogen Streptococcus suis. Most of these resistance genes are carried by chromosomal Mobile Genetic Elements (MGEs), in particular, Integrative and Conjugative Elements (ICEs) and Integrative and Mobilizable Elements (IMEs). ICEs and IMEs frequently form tandems or nested composite elements, which make their identification difficult. To evaluate their mobility, it is necessary to (i) select the suitable donor-recipient pairs for mating assays, (ii) do PCR excision tests to confirm that the genetic element is able to excise from the chromosome as a circular intermediate, and (iii) evaluate the transfer of the genetic element by conjugation by doing mating assays. In addition to a dissemination of resistance genes between S. suis strains, MGEs can lead to a spreading of resistance genes in the environment and toward pathogenic bacteria. This propagation had to be considered in a One Health perspective.
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  • 文章类型: Journal Article
    由于低温,极地环境对生活构成了极端挑战,有限的水,高辐射,和冰冻的风景。尽管条件恶劣,许多宏观和微生物已经开发了适应性策略来减少极端寒冷的有害影响。主要的生存策略包括避免或耐受细胞内和细胞外冷冻。许多生物通过产生小的有机化合物如糖来保持过冷状态来实现这一目标,甘油,和氨基酸,或通过增加溶质浓度。另一种方法是冰结合蛋白(IBP)的合成,特别是抗冻蛋白(AFP),这阻碍了冰晶在熔点以下的生长。这种适应对于防止细胞内冰形成至关重要,这可能是致命的,并确保细胞周围存在液态水。AFP在不同的物种中独立进化,表现出明显的热滞后和冰的结构特性。除了他们的生态作用,AFP在生物技术中获得了广泛的关注,在食品中的潜在应用,农业,和制药行业。这篇综述旨在全面了解AFP对水的活动和影响,检查它们在冷适应生物中的意义,并探索微生物AFP的多样性。使用基于种植和独立种植的数据的荟萃分析,我们评估了产生AFPs的微生物与寒冷环境之间的相关性。我们还探索了AFP的小型和大型生物技术应用,为未来的研究提供了一个视角。
    Polar environments pose extreme challenges for life due to low temperatures, limited water, high radiation, and frozen landscapes. Despite these harsh conditions, numerous macro and microorganisms have developed adaptive strategies to reduce the detrimental effects of extreme cold. A primary survival tactic involves avoiding or tolerating intra and extracellular freezing. Many organisms achieve this by maintaining a supercooled state by producing small organic compounds like sugars, glycerol, and amino acids, or through increasing solute concentration. Another approach is the synthesis of ice-binding proteins, specifically antifreeze proteins (AFPs), which hinder ice crystal growth below the melting point. This adaptation is crucial for preventing intracellular ice formation, which could be lethal, and ensuring the presence of liquid water around cells. AFPs have independently evolved in different species, exhibiting distinct thermal hysteresis and ice structuring properties. Beyond their ecological role, AFPs have garnered significant attention in biotechnology for potential applications in the food, agriculture, and pharmaceutical industries. This review aims to offer a thorough insight into the activity and impacts of AFPs on water, examining their significance in cold-adapted organisms, and exploring the diversity of microbial AFPs. Using a meta-analysis from cultivation-based and cultivation-independent data, we evaluate the correlation between AFP-producing microorganisms and cold environments. We also explore small and large-scale biotechnological applications of AFPs, providing a perspective for future research.
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  • 文章类型: Journal Article
    历史气候数据表明,地球经历了多个地质时期,气候比现在温暖得多,包括温度高于3-4°C的Miocene(23-5.3myaBP),以及第四纪更近的间冰期,例如,海洋同位素阶段11c(约425-395kaBP)和中全新世热力最大值(7.5-4.2kaBP),在此期间,大陆冰川可能完全融化了。这样的温暖时期将对含冰动物区系的分布产生严重后果,生物多样性和人口结构。为了确定这些气候事件对北欧冰冻圈的影响,我们调查了整个挪威大陆和斯瓦尔巴群岛的冰栖息地,从海上冰川到大陆冰片(即不流动,内陆冰遭受深冻越冬),发现特别广泛的冰栖轮虫种群。线粒体和核DNA组合测序鉴定出大约16个未描述,物种级轮虫谱系揭示了一种早于第四纪(>2.58mya)的祖先。这些轮虫在实验室实验中还显示出强大的冻融耐受性。总的来说,这些数据表明广泛的冰避难所,与当代挪威风景中稳定的冰片相当,在地质时期坚持在冰冻圈,并可能在第四纪之前和整个第四纪中促进了含冰后生动物的长期生存。
    Historical climate data indicate that the Earth has passed through multiple geological periods with much warmer-than-present climates, including epochs of the Miocene (23-5.3 mya BP) with temperatures 3-4°C above present, and more recent interglacial stages of the Quaternary, for example, Marine Isotope Stage 11c (approx. 425-395 ka BP) and Middle Holocene thermal maximum (7.5-4.2 ka BP), during which continental glaciers may have melted entirely. Such warm periods would have severe consequences for ice-obligate fauna in terms of their distribution, biodiversity and population structure. To determine the impacts of these climatic events in the Nordic cryosphere, we surveyed ice habitats throughout mainland Norway and Svalbard ranging from maritime glaciers to continental ice patches (i.e. non-flowing, inland ice subjected to deep freezing overwinter), finding particularly widespread populations of ice-inhabiting bdelloid rotifers. Combined mitochondrial and nuclear DNA sequencing identified approx. 16 undescribed, species-level rotifer lineages that revealed an ancestry predating the Quaternary (> 2.58 mya). These rotifers also displayed robust freeze/thaw tolerance in laboratory experiments. Collectively, these data suggest that extensive ice refugia, comparable with stable ice patches across the contemporary Norwegian landscape, persisted in the cryosphere over geological time, and may have facilitated the long-term survival of ice-obligate Metazoa before and throughout the Quaternary.
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  • 文章类型: Journal Article
    抗冻蛋白(AFP)是显著的生物分子,其在痕量浓度下抑制冰形成。为了抑制冰的生长,AFP不仅必须与冰晶结合,但也抵制被冰吞噬。最高的过冷,[公式:见正文],人们普遍认为,AFP能够抵抗吞噬的程度与分离的相反,[公式:见正文],在绑定的AFP之间,而其对AFP分子特征的依赖性仍然知之甚少。通过使用专门的分子模拟和界面热力学,在这里,我们表明,与传统智慧相比,[公式:见文本]缩放为[公式:见文本],而不是[公式:见文本]。我们进一步表明[公式:参见正文]与AFP大小成正比,并且各种天然存在的AFP在抵抗冰吞噬方面是最佳的。通过促进AFP结构-功能关系的发展,我们希望我们的发现将为AFP的合理设计铺平道路。
    Antifreeze proteins (AFPs) are remarkable biomolecules that suppress ice formation at trace concentrations. To inhibit ice growth, AFPs must not only bind to ice crystals, but also resist engulfment by ice. The highest supercooling, [Formula: see text], for which AFPs are able to resist engulfment is widely believed to scale as the inverse of the separation, [Formula: see text], between bound AFPs, whereas its dependence on the molecular characteristics of the AFP remains poorly understood. By using specialized molecular simulations and interfacial thermodynamics, here, we show that in contrast with conventional wisdom, [Formula: see text] scales as [Formula: see text] and not as [Formula: see text]. We further show that [Formula: see text] is proportional to AFP size and that diverse naturally occurring AFPs are optimal at resisting engulfment by ice. By facilitating the development of AFP structure-function relationships, we hope that our findings will pave the way for the rational design of AFPs.
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  • 文章类型: Journal Article
    背景:由于各种生物分子,嗜冷物可以在低温条件下存活。这些分子与细胞相互作用,冰晶,和脂质双层来增强它们的功能。以前的研究通常通过解冻冷冻样品并在室温下进行生物测定来测量这些相互作用;然而,在低温条件下研究这些相互作用是至关重要的。这是因为这些生物分子可以在较低的温度下发挥作用。因此,必须建立一个在零度以下温度条件下测量化学相互作用的平台。
    结果:在零度以下温度条件下,在具有通道状结构的冰粒边界内评估了生物分子之间的化学相互作用,这避免了解冻的需要。蔗糖水溶液在微流体通道内冷冻,促进冷冻浓缩溶液(FCS)的形成,该溶液充当大小可调的电泳场。将抗生物素蛋白或单链DNA(ssDNA)预先引入FCS中。将其表面用与靶分析物互补的分子修饰的探针微/纳米球引入FCS中。如果目标在零下温度条件下具有功能,它们与互补分子相互作用。靶分子和纳米球之间的化学相互作用导致颗粒的聚集。FCS通道直径的大小可调性使得能够识别聚合级别,这表明相互作用反应性。抗生物素蛋白-生物素相互作用和ssDNA杂交作为化学相互作用的模型,证明在零度以下温度条件下的交互性。本文提供的结果表明,在冷冻状态下原位测量生化测定的潜力,阐明生物相关大分子在0℃或略低于0℃时的功能。
    结论:这是在零度以下温度条件下评估化学相互作用而不采用冻融过程的第一种方法。该方法具有仅在低温下显示化学相互作用的优点。因此,它可用于筛选和评估冷冻相关生物分子的功能,包括冷休克和防冻蛋白。
    BACKGROUND: Psychrophiles can survive under cryogenic conditions because of various biomolecules. These molecules interact with cells, ice crystals, and lipid bilayers to enhance their functionality. Previous studies typically measured these interactions by thawing frozen samples and conducting biological assays at room temperature; however, studying these interactions under cryogenic conditions is crucial. This is because these biomolecules can function at lower temperatures. Therefore, a platform for measuring chemical interactions under sub-zero temperature conditions must be established.
    RESULTS: The chemical interactions between biomolecules under sub-zero temperature conditions were evaluated within ice grain boundaries with a channel-like structure, which circumvents the need for thawing. An aqueous solution of sucrose was frozen within a microfluidic channel, facilitating the formation of freeze-concentrated solutions (FCSs) that functioned as size-tunable electrophoretic fields. Avidin proteins or single-stranded DNA (ssDNA) were introduced into the FCS in advance. Probe micro/nanospheres whose surfaces were modified with molecules complementary to the target analytes were introduced into the FCS. If the targets have functionalities under sub-zero temperature conditions, they interact with complementary molecules. The chemical interactions between the target molecules and nanospheres led to the aggregation of the particles. The size tunability of the diameter of the FCS channels enabled the recognition of aggregation levels, which is indicative of interaction reactivity. The avidin-biotin interaction and ssDNA hybridization served as models for chemical interactions, demonstrating interactivity under sub-zero temperature conditions. The results presented herein suggest the potential for in situ measurement of biochemical assays in the frozen state, elucidating the functionality of bio-related macromolecules at or slightly below 0 °C.
    CONCLUSIONS: This is the first methodology to evaluate chemical interactions under sub-zero temperature conditions without employing the freeze-and-thaw process. This method has the advantage of revealing the chemical interactions only at low temperatures. Therefore, it can be used to screen and evaluate the functionality of cryo-related biomolecules, including cold-shock and antifreeze proteins.
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