hypervirulent strains

高毒力菌株
  • 文章类型: Journal Article
    对多种药物(KPMDR)耐药的肺炎克雷伯菌菌株,通常在医院环境中获得并导致医疗保健相关感染,构成严重的公共卫生威胁,高毒力肺炎克雷伯菌(HvKp)也是如此,这也可能导致其他健康个体的严重感染。在最近的COVID-19大流行期间,抗生素的广泛使用往往是不必要的,这加剧了临床环境中抗生素耐药性带来的挑战。人们越来越担心高毒力(hvKp)菌株可能会获得赋予抗微生物耐药性的基因,因此,将MDR谱与它们传播到多个身体部位的能力相结合,导致难以治疗的感染。这项研究旨在比较四年(2020-2023年)收集的产KPC-3肺炎克雷伯菌分离株的耐药性和毒力谱。对所有MDRCRE-K进行基于基因组的监测肺炎用于鉴定遗传差异并表征毒力和抗性谱。我们的结果提供了抗性和毒力基因进化的图片,并有助于避免具有多药抗性和毒力增加特征的分离株的可能传播。这被认为是公共卫生面临的主要全球挑战之一,在我们的医院里。
    Klebsiella pneumoniae strains that are resistant to multiple drugs (KPMDRs), which are often acquired in hospital settings and lead to healthcare-associated infections, pose a serious public health threat, as does hypervirulent K. pneumoniae (hvKp), which can also cause serious infections in otherwise healthy individuals. The widespread and often unnecessary use of antibiotics seen during the recent COVID-19 pandemic has exacerbated the challenges posed by antibiotic resistance in clinical settings. There is growing concern that hypervirulent (hvKp) strains may acquire genes that confer antimicrobial resistance, thus combining an MDR profile with their increased ability to spread to multiple body sites, causing difficult-to-treat infections. This study aimed to compare resistance and virulence profiles in KPC-3-producing K. pneumoniae isolates collected over four years (2020-2023). A genome-based surveillance of all MDR CRE-K. pneumoniae was used to identify genetic differences and to characterize the virulence and resistance profiles. Our results provide a picture of the evolution of resistance and virulence genes and contribute to avoiding the possible spread of isolates with characteristics of multi-drug resistance and increased virulence, which are thought to be one of the main global challenges to public health, within our hospital.
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  • 文章类型: Journal Article
    近年来,肺炎克雷伯菌多重耐药(MDR)菌株已在全球范围内传播,负责医院感染的发生和严重程度。NDM-1-kp,产生VIM-1碳青霉烯酶的分离株以及产生广谱β内酰胺酶(ESBL)的分离株以及产酸克雷伯菌菌株已成为新兴的病原体。由于抗生素耐药性问题日益严重,噬菌体疗法可能是对抗这种多药耐药克雷伯菌菌株的潜在替代方法。这里,我们介绍了对肺炎克雷伯菌有活性的噬菌体的分离和生物学的长期研究结果,以及K.oxytoca菌株。我们评估了生物学特性,形态学,宿主特异性,裂解谱和这些噬菌体对化学试剂的敏感性,以及它们的生命周期参数,如吸附,潜伏期,和突发大小。我们指定的噬菌体,vB_KpnM-52N(Kpn52N)和VB_KpnM-53N(Kpn53N),在测试的克雷伯菌菌株中表现出相对较宽的裂解谱,高突发大小,吸附率和稳定性,这使得它们有希望用于治疗目的。我们还检查了从我们的历史收藏中选择的克雷伯菌噬菌体。值得注意的是,近60年前分离出的一种噬菌体成功用于一名新生儿的化脓性脑脊髓膜炎,至今仍保持着裂解活性。确定并分析所选噬菌体的基因组序列。测序基因组的噬菌体属于Slopekvirus和角达病毒属,在家庭水平上与T4相关的一组噬菌体。他们分享T4的几个特点,使它们适合抗菌治疗:强制溶解的生活方式,缺乏已知毒力或抗生素抗性基因的同源物,和一系列酶在感染时降解宿主DNA。
    In recent years, multidrug-resistant (MDR) strains of Klebsiella pneumoniae have spread globally, being responsible for the occurrence and severity of nosocomial infections. The NDM-1-kp, VIM-1 carbapenemase-producing isolates as well as extended-spectrum beta lactamase-producing (ESBL) isolates along with Klebsiella oxytoca strains have become emerging pathogens. Due to the growing problem of antibiotic resistance, bacteriophage therapy may be a potential alternative to combat such multidrug-resistant Klebsiella strains. Here, we present the results of a long-term study on the isolation and biology of bacteriophages active against K. pneumoniae, as well as K. oxytoca strains. We evaluated biological properties, morphology, host specificity, lytic spectrum and sensitivity of these phages to chemical agents along with their life cycle parameters such as adsorption, latent period, and burst size. Phages designated by us, vB_KpnM-52N (Kpn52N) and VB_KpnM-53N (Kpn53N), demonstrated relatively broad lytic spectra among tested Klebsiella strains, high burst size, adsorption rates and stability, which makes them promising candidates for therapeutic purposes. We also examined selected Klebsiella phages from our historical collection. Notably, one phage isolated nearly 60 years ago was successfully used in purulent cerebrospinal meningitis in a new-born and has maintained lytic activity to this day. Genomic sequences of selected phages were determined and analyzed. The phages of the sequenced genomes belong to the Slopekvirus and Jiaodavirus genus, a group of phages related to T4 at the family level. They share several features of T4 making them suitable for antibacterial therapies: the obligatorily lytic lifestyle, a lack of homologs of known virulence or antibiotic resistance genes, and a battery of enzymes degrading host DNA at infection.
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  • 文章类型: Journal Article
    这项研究的目的是确定来自阿根廷的22种加蒂隐球菌复杂临床分离株的基因型多样性,并将这些基因型置于临床多样性中,来自拉丁美洲的兽医和环境分离株。还确定了分离株的交配类型和抗真菌敏感性。由URA5-RFLP,9个分离株被鉴定为分子型VGI,10作为VGII,一个作为VGIII,两个作为VGIV。多位点序列分型(MSLT),遵循国际人类和动物真菌学学会(ISHAM)共识MLST计划,用于确定基因型多样性。我们的研究结果表明,在阿根廷,VGI分离株遗传多样性低,而VGII分离株具有较高的遗传多样性。通过URA5-RFLP鉴定为VGIV的两个分离株都通过MLST基因分型为属于当前命名的VGVI进化枝。从所有分离物中,八种序列类型(ST)在阿根廷是独一无二的,虽然其他国家已经报告了五种STS,对基因型ST20和ST7非常感兴趣,因为它们属于亚型VGIIa和VGIIb,分别,这与北美爆发的高毒株有关。要注意,地理分析表明,某些基因型可能与阿根廷的某些地区有关。大多数分离株是MATα,但我们在全国首次报道了一个孤立的玛塔。抗真菌药敏试验显示伊曲康唑,伏立康唑和泊沙康唑对所有分离株都有很高的活性,而两性霉素B,氟康唑和5-氟胞嘧啶是对所有研究分离株活性最低的药物.
    The aim of this study was to determine the genotypic diversity of 22 Cryptococcus gattii species complex clinical isolates from Argentina and to place these genotypes within the diversity of clinical, veterinary and environmental isolates from Latin America. Mating type and antifungal susceptibility of the isolates were also determined. By URA5-RFLP, nine isolates were identified as molecular type VGI, 10 as VGII, one as VGIII and two as VGIV. Multilocus sequence typing (MSLT), following the International Society for Human and Animal Mycology (ISHAM) consensus MLST scheme, was used to determine the genotypic diversity. Our results suggest that, in Argentina, VGI isolates have low genetic diversity, while VGII isolates have high genetic diversity. Both isolates identified as VGIV by URA5-RFLP were genotyped by MLST as belonging to the currently named VGVI clade. From all isolates, eight sequence types (STs) were unique for Argentina, while five STs have been reported already in other countries, being of high interest the genotypes ST20 and ST7 since they belong to the subtypes VGIIa and VGIIb, respectively, which are associated with hypervirulent strains responsible for outbreaks in North America. To note, geographical analysis showed that some genotypes may be associated with some regions in Argentina. Most isolates were MATα, but we are reporting one isolate MATa for the first time in the country. Antifungal susceptibility tests showed that itraconazole, voriconazole and posaconazole had high activity against all isolates, while amphotericin B, fluconazole and 5-fluorocytosine were the least active drugs against all studied isolates.
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  • 文章类型: Journal Article
    艰难梭菌(CDI)感染,一种常见的医疗保健相关感染,包括从轻度腹泻到严重假膜性结肠炎的症状。毒素A(TcdA)和毒素B(TcdB)引起细胞毒性和细胞从肠上皮脱离,并负责CDI症状学。大约20%的艰难梭菌菌株产生由tcdA和tcdB基因编码的二元毒素(CDT)。被认为会增强TcdA和TcdB的毒性;然而,CDT在CDI中的作用仍存在争议.这里,我们重点描述了CDT的主要特征及其对宿主的影响,临床相关性,流行病学,和潜在的治疗方法。
    Infection with Clostridioides difficile (CDI), a common healthcare-associated infection, includes symptoms ranging from mild diarrhea to severe cases of pseudomembranous colitis. Toxin A (TcdA) and toxin B (TcdB) cause cytotoxicity and cellular detachment from intestinal epithelium and are responsible for CDI symptomatology. Approximately 20% of C. difficile strains produce a binary toxin (CDT) encoded by the tcdA and tcdB genes, which is thought to enhance TcdA and TcdB toxicity; however, the role of CDT in CDI remains controversial. Here, we focused on describing the main features of CDT and its impact on the host, clinical relevance, epidemiology, and potential therapeutic approaches.
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  • 文章类型: Journal Article
    尽管单核细胞增生李斯特菌是一种广泛研究的食源性病原体,对可能代表单核细胞增生李斯特菌的蜗牛分离株的基因组分析仍然很少。这里,我们使用全基因组测序(WGS)来评估高毒力的基因组多样性,从蜗牛中分离出的15个单核细胞增生李斯特菌的毒性和非毒性表型,以揭示它们的存活率,毒力,以及蜗牛感染模型中宿主-病原体相互作用的机制。大多数分离株(66.7%)的特征是多药耐药(MDR),属于与人类感染病例密切相关的克隆复合物(CC)。所有分离株都含有与入侵和感染相关的完整基因,而高毒力分离株适应宿主环境。拥有参与磷壁酸生物合成的基因,肽聚糖修饰和生物膜形成,与它们对血淋巴血浆表型和生物膜形成能力的耐受性相关。蜗牛感染模型表明,高毒力分离株通过增加高达30%的循环凋亡血细胞,并在蜗牛血淋巴中诱导硝酸盐产生和活性氧(ROS)产生,从而触发了程序性宿主细胞死亡途径。相比之下,具有调节鞭毛运动性基因表达的截短的mogR基因的非毒性菌株的施用仅导致坏死的非凋亡细胞的增加。总的来说,这项研究为蜗牛中单核细胞增生李斯特菌的遗传多样性提供了重要的见解,它们的基因组特征与它们的高毒力/非毒力表型有关,以及宿主-病原体相互作用的机制。
    Even though Listeria monocytogenes is an extensive-studied foodborne pathogen, genome analysis of isolates from snails that may represent a reservoir of L. monocytogenes are still scarce. Here, we use whole-genome sequencing (WGS) to assess the genomic diversity of hypervirulent, virulent and non-virulent phenotypes of 15 L. monocytogenes isolated from snails to unveil their survival, virulence, and host-pathogen mechanisms of interactions in a snail infection model. Most of isolates (66.7%) were characterized as multidrug resistant (MDR) and belonged to clonal complexes (CCs) which are strongly associated with cases of human infection. All isolates contained intact genes associated with invasion and infection while hypervirulent isolates are adapted to host environment, possessing genes which are involved in teichoic acid biosynthesis, peptidoglycan modification and biofilm formation, correlating with their tolerance to haemolymph plasma phenotype and biofilm formation ability. A snail infection model showed that hypervirulent isolates triggered programmed host cell death pathway by increasing up to 30% the circulating apoptotic hemocytes in combination with induced nitrate production and reactive oxygen species (ROS) generation in snails\' haemolymph. In contrast, the administration of the non-virulent strain which possesses a truncated mogR gene that regulates flagellar motility gene expression led only to an increase of necrotic non-apoptotic cells. Overall, this study provides significant insights into the genetic diversity of L. monocytogenes from snails, the genomic features of them linked to their hypervirulent/non-virulent phenotype, and the mechanisms of host-pathogen interactions.
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  • 文章类型: Journal Article
    Although all isolates of the foodborne pathogen Listeria monocytogenes are considered to be pathogenic, epidemiological evidence indicates that certain serovar 4b lineages are more likely to cause severe invasive (neuromeningeal, maternal-fetal) listeriosis. Recently described as L. monocytogenes \"hypervirulent\" clones, no distinctive bacterial trait has been identified so far that could account for the differential pathogenicity of these strains. Here, we discuss some preliminary observations in experimentally infected mice suggesting that serovar 4b hypervirulent strains may have a hitherto unrecognized capacity for prolonged in vivo survival. We propose the hypothesis that protracted survivability in primary infection foci in liver and spleen-the first target organs after intestinal translocation-may cause L. monocytogenes serovar 4b hypervirulent clones to have a higher probability of secondary dissemination to brain and placenta.
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  • 文章类型: Journal Article
    肺炎克雷伯菌是一种革兰氏阴性致病菌,具有聚集为生物膜的能力,代表医院感染的主要病原体之一,显示对抗生素的高耐药率。肺炎克雷伯菌生物膜聚集体主要由胞外多糖组成,eDNA和蛋白质。此外,生物膜可以附着在医疗设备上,如气管内导管和导管,但在身体表面最危险。这里,我们讨论了肺炎克雷伯菌生物膜抗性机制的最新发现,包括与“经典”有关的基因和蛋白质,多重耐药和高毒力菌株,还有毒力因子。此外,我们还探索了可能治疗这些生物膜的新策略,以及最近发现的可能导致未来治疗的分子。
    Klebsiella pneumoniae is a Gram-negative pathogenic bacterium that has the ability to aggregate as biofilm, representing one of the main agents in hospital infections, showing high rates of resistance to antibiotics. The K. pneumoniae biofilm aggregates are composed mainly of extracellular polysaccharides, eDNA and proteins. Besides, biofilms can attach to medical devices, such as endotracheal tubes and catheters, but are most dangerous on body surfaces. Here, we discuss the recent findings about the resistance mechanisms of K. pneumoniae biofilms, including genes and protein involved in \'classic\', multidrug-resistant and hypervirulent strains, and also virulence factors. In addition, we also explore new strategies for possible treatment of these biofilms, and recently discovered molecules which may lead to future treatments.
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