hydrogen bonds

氢键
  • 文章类型: Journal Article
    二维共价有机骨架(COFs)由于其独特的结构和性能,是电化学储能器件的理想电极材料。COF中氧化还原活性位点的可及性和利用效率是其伪电容性能的关键决定因素。通过在亚胺COF骨架上引入精心设计的具有氢键形成能力的酚羟基(Ar-OH),DHBD-Sb-COF比母体BD-Sb-COF表现出改善的亲水性和结晶度,因此,COF电极中的氧化还原活性位点(SbPh3部分)可以通过具有93%的高活性位点利用率的水性电解质高度进入。DHBD-Sb-COF//AC提供了出色的超级电容性能,在2553WKg-1的功率密度下具有78WhKg-1的能量密度和超级循环稳定性,超过了大多数以前报道的基于原始COF电极的超级电容器。在亚胺COF骨架上引入羟基以增强亲水性和结晶度的“二合一”策略为提高高性能超级电容器的COF基电极的电化学性能提供了新的途径。
    Two-dimensional covalent organic frameworks (COFs) are ideal electrode materials for electrochemical energy storage devices due to their unique structures and properties, and the accessibility and utilization efficiency of the redox-active sites within COFs are critical determinants of their pseudocapacitive performance. Via introducing meticulously designed phenolic hydroxyl (Ar-OH) groups with hydrogen-bond forming ability onto the imine COF skeletons, DHBD-Sb-COF exhibited improved hydrophilicity and crystallinity than the parent BD-Sb-COF, the redox-active sites (SbPh3 moieties) in COF electrodes could thus be highly accessed by aqueous electrolyte with a high active-site utilization of 93%. DHBD-Sb-COF//AC provided an excellent supercapacitive performance with an energy density of 78 Wh Kg-1 at the power density of 2553 W Kg-1 and super cycling stability, exceeding most of the previously reported pristine COF electrode-based supercapacitors. The \"two-in-one\" strategy of introducing hydroxyl groups onto imine COF skeletons to enhance both hydrophilicity and crystallinity provides a new avenue to improve the electrochemical performance of COF-based electrodes for high-performance supercapacitors.
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  • 文章类型: Journal Article
    2019年底,一种新型冠状病毒的出现导致其被鉴定为SARS-CoV-2,从而加速了COVID-19大流行的爆发。对SARS-CoV-2进行了许多实验和计算研究,以了解其行为和模式。在这项研究中,分子动力学(MD)模拟用于比较SARS-CoV-2及其关注变体(VOC)-Alpha的行为,Beta,Gamma,Delta,和Omicron-与hACE2蛋白。对来自蛋白质数据库(PDB)的蛋白质结构进行比对,并使用嵌合体进行修整,专注于负责ACE2相互作用的受体结合域(RBD)。使用视觉分子动力学(VMD)和纳米级分子动力学(NAMD2)进行MD模拟,从这些模拟结果中提取了盐桥和氢键数据。从10ns模拟的最后5ns中提取的数据被可视化,提供对每个变体与ACE2相互作用的相对稳定性的见解。此外,计算了静电和疏水性蛋白质表面,可视化,并分析。我们全面的计算结果有助于药物发现和未来的疫苗设计,因为它们提供了有关蛋白质-蛋白质相互作用(PPI)中重要氨基酸的信息。我们的分析表明,原始和Omicron变体是两种结构上最相似的蛋白质。γ变体通过氢键与hACE2形成最强的相互作用,而Alpha和Delta形成最稳定的盐桥;Omicron由结合位点的正电势主导,这使得吸引hACE2受体变得容易;同时,原始的,Beta,Delta,和Omicron变体通过氢键和盐桥显示出不同水平的相互作用稳定性,这表明靶向治疗剂可以破坏这些关键的相互作用以预防SARS-CoV-2感染。
    In late 2019, the emergence of a novel coronavirus led to its identification as SARS-CoV-2, precipitating the onset of the COVID-19 pandemic. Many experimental and computational studies were performed on SARS-CoV-2 to understand its behavior and patterns. In this research, Molecular Dynamic (MD) simulation is utilized to compare the behaviors of SARS-CoV-2 and its Variants of Concern (VOC)-Alpha, Beta, Gamma, Delta, and Omicron-with the hACE2 protein. Protein structures from the Protein Data Bank (PDB) were aligned and trimmed for consistency using Chimera, focusing on the receptor-binding domain (RBD) responsible for ACE2 interaction. MD simulations were performed using Visual Molecular Dynamics (VMD) and Nanoscale Molecular Dynamics (NAMD2), and salt bridges and hydrogen bond data were extracted from the results of these simulations. The data extracted from the last 5 ns of the 10 ns simulations were visualized, providing insights into the comparative stability of each variant\'s interaction with ACE2. Moreover, electrostatics and hydrophobic protein surfaces were calculated, visualized, and analyzed. Our comprehensive computational results are helpful for drug discovery and future vaccine designs as they provide information regarding the vital amino acids in protein-protein interactions (PPIs). Our analysis reveals that the Original and Omicron variants are the two most structurally similar proteins. The Gamma variant forms the strongest interaction with hACE2 through hydrogen bonds, while Alpha and Delta form the most stable salt bridges; the Omicron is dominated by positive potential in the binding site, which makes it easy to attract the hACE2 receptor; meanwhile, the Original, Beta, Delta, and Omicron variants show varying levels of interaction stability through both hydrogen bonds and salt bridges, indicating that targeted therapeutic agents can disrupt these critical interactions to prevent SARS-CoV-2 infection.
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  • 文章类型: Journal Article
    磁化水(MW)是液态水的一种形式,它暴露于磁场中以改变其氢键结构,导致形成通过氢键连接的各种大小和构型的水分子簇。这种磁化过程会引起水的物理化学性质发生一些变化,例如增加pH值,电导率,和溶解氧含量,以及降低的表面张力,密度,和蒸发温度相比,未经处理的水。在这篇叙述性评论中,我们探索了MW在农业中的有效利用,在那里它有很好的应用历史,以及它在医疗领域的直接应用潜力,目前处于研究的前沿。MW是促进从不可持续农业向可持续农业过渡的最有前途的创新之一。通过促进少加工食品的消费和减少资源消耗,有望产生积极的人类健康结果。除了这些对人类健康的间接影响,利用动物模型的临床前研究表明,水磁化对糖尿病有有益的影响,肾功能,骨骼健康,和生育能力。这些健康益处似乎源于MW增加抗氧化酶活性同时减少脂质过氧化和炎症标志物的能力。就人类的直接应用而言,MW主要在牙科和皮肤病学领域进行了研究。MW漱口水一直显示出对变异链球菌的功效,研究报告了与氯己定相当的效果。在皮肤科,MW的局部应用已经证明了皮肤生物物理参数的改善,头发数量和头发质量指数增加,并促进了挑战性伤口的愈合。有趣的是,这些对人类皮肤的影响似乎是由自噬的局部激活介导的,可能通过轻度碱性胁迫。总之,这篇综述强调了MW在促进行星和人类健康的整体方法中的有希望的作用。未来的研究应该集中在规范磁化过程上,探索MW诱导自噬的分子机制,并研究MW作为治疗以自噬受损为特征的人类疾病的补充策略的潜力。
    Magnetized water (MW) is a form of liquid water that has been exposed to a magnetic field to alter its hydrogen bonding structure, resulting in the formation of water molecule clusters of various sizes and configurations connected by hydrogen bonds. This magnetization process induces several changes in the physicochemical properties of water, such as increased pH, electrical conductivity, and dissolved oxygen content, as well as decreased surface tension, density, and evaporation temperature compared to untreated water. In this narrative review, we explore the effective utilization of MW in agriculture, where it has a well-established history of applications, and its potential for direct applications in the medical field, which are currently at the forefront of research. MW is one of the most promising innovations for facilitating the transition from unsustainable to sustainable agriculture, which is expected to yield positive human health outcomes by promoting the consumption of less processed foods and reducing resource consumption. In addition to these indirect effects on human health, preclinical research utilizing animal models has demonstrated that water magnetization exerts beneficial effects on diabetes, renal function, bone health, and fertility. These health benefits appear to stem from the ability of MW to increase the activity of antioxidant enzymes while decreasing lipid peroxidation and inflammatory markers. In terms of direct human applications, MW has been primarily studied in the fields of dentistry and dermatology. MW mouthrinse has consistently shown efficacy against Streptococcus mutans, with studies reporting comparable effects to chlorhexidine. In dermatology, the topical application of MW has demonstrated improvements in skin biophysical parameters, increased hair count and hair mass index, and promoted the healing of challenging wounds. Intriguingly, these effects on human skin seem to be mediated by local activation of autophagy, potentially through mild alkaline stress. In conclusion, this review underscores the promising role of MW in promoting a holistic approach to planetary and human health. Future studies should focus on standardizing the magnetization process, exploring the molecular mechanisms underlying MW-induced autophagy, and investigating the potential of MW as a complementary strategy for treating human diseases characterized by impaired autophagy.
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  • 文章类型: Journal Article
    标题化合物,C17H13BrN4O5是通过Cu2Br2催化的4-硝基-苯基-氧基-乙酸炔丙基醚和对溴苯基-叠氮化物之间的Meldal-Sharpless反应合成的,并通过X射线结构测定和1HNMR表征。mol-ecules,溴-苯基-三唑和硝基-苯基-氧基-乙酸酯片段几乎垂直取向,通过分子间C-H化学键和C-H化学键连接成三维网络(通过Hirshfeld表面分析确认),π-π和Br-π相互作用。
    The title compound, C17H13BrN4O5, was synthesized by a Cu2Br2-catalysed Meldal-Sharpless reaction between 4-nitro-phen-oxy-acetic acid propargyl ether and para-bromo-phenyl-azide, and characterized by X-ray structure determination and 1H NMR spectroscopy. The mol-ecules, with a near-perpendicular orientation of the bromo-phenyl-triazole and nitro-phen-oxy-acetate fragments, are connected into a three-dimensional network by inter-molecular C-H⋯O and C-H⋯N hydrogen bonds (confirmed by Hirshfeld surface analysis), π-π and Br-π inter-actions.
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  • 文章类型: Journal Article
    化合物2',3\',4\',6\'-四-O-乙酰基-β-d-吡喃葡萄糖基N\'-氰基-N-苯基-氨基甲酸酯基-硫基(C22H25N3O9S,5a),2\',3\',4\',6\'-四-O-乙酰基-β-d-半乳糖基-吡喃氨基-N\'-氰基-N-苯基-氨基甲酰亚胺-硫基-酯,(C22H25N3O9S,5b),2\',3\',4\',6\'-四-O-乙酰基-β-d-半乳糖基-吡喃氨基N\'-氰基-N-甲基-甲脒基-硫基-酯(C17H23N3O9S,5c),和2\',3\',4\',6\'-四-O-乙酰基-β-d-半乳糖基吡喃N\'-氰基-N-对甲苯基-氨基甲酸酯基-硫代-酯(C23H27N3O9S,5d)均在P212121中结晶,Z=4。对于所有四种结构,通过中心(形式)C=N(CN)双键的配置的氨基甲酸酯基硫基是Z。扭转角C5-O1-C1-S(标准糖编号)都接近180°,确认取代基的β位。化合物5b涉及分子内氢键N-H-O1;在5c中,这种接触是三中心相互作用的较弱分支,而在5a和5d中,H→O距离要长得多,并不代表明显的相互作用。氨基甲酸酯基-硫基的中心碳原子处的C-N键长几乎相等。乙酰基的所有C-O-C=O扭转角对应于同平面几何形状,但除此之外,所有四个摩尔单元都表现出高度的构象灵活性,等效组具有许多不同的扭转角。在水晶包装中,5a,5c和5d形成层结构,涉及经典的氢键N-H_N氰基和各种弱氢键C-H_O或C-H_S。5b的堆积几乎没有特征,涉及大量的“弱”氢键。在附录中,提出了用于结构确定的波长偏好的盆栽历史,并建议,即使对于非中心对称空间群中的小有机晶体,应考虑使用Mo辐射。
    The compounds 2\',3\',4\',6\'-tetra-O-acetyl-β-d-gluco-pyranosyl N\'-cyano-N-phenyl-carbamimido-thio-ate (C22H25N3O9S, 5a), 2\',3\',4\',6\'-tetra-O-acetyl-β-d-galacto-pyranosyl N\'-cyano-N-phenyl-carbamimido-thio-ate, (C22H25N3O9S, 5b), 2\',3\',4\',6\'-tetra-O-acetyl-β-d-galacto-pyranosyl N\'-cyano-N-methyl-carbamimido-thio-ate (C17H23N3O9S, 5c), and 2\',3\',4\',6\'-tetra-O-acetyl-β-d-galacto-pyranosyl N\'-cyano-N-p-tolyl-carbamimido-thio-ate (C23H27N3O9S, 5d) all crystallize in P212121 with Z = 4. For all four structures, the configuration across the central (formal) C=N(CN) double bond of the carbamimido-thio-ate group is Z. The torsion angles C5-O1-C1-S (standard sugar numbering) are all close to 180°, confirming the β position of the substituent. Compound 5b involves an intra-molecular hydrogen bond N-H⋯O1; in 5c this contact is the weaker branch of a three-centre inter-action, whereas in 5a and 5d the H⋯O distances are much longer and do not represent significant inter-actions. The C-N bond lengths at the central carbon atom of the carbamimido-thio-ate group are almost equal. All C-O-C=O torsion angles of the acetyl groups correspond to a synperiplanar geometry, but otherwise all four mol-ecules display a high degree of conformational flexibility, with many widely differing torsion angles for equivalent groups. In the crystal packing, 5a, 5c and 5d form layer structures involving the classical hydrogen bond N-H⋯Ncyano and a variety of \'weak\' hydrogen bonds C-H⋯O or C-H⋯S. The packing of 5b is almost featureless and involves a large number of borderline \'weak\' hydrogen bonds. In an appendix, a potted history of wavelength preferences for structure determination is presented and it is recommended that, even for small organic crystals in non-centrosymmetric space groups, the use of Mo radiation should be considered.
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  • 文章类型: Journal Article
    变刚度材料已在软机器人技术中显示出相当大的应用。然而,以前报道的材料经常难以调和高刚度,可拉伸性,韧性,和自我修复能力,因为这些性质在分子设计中的固有冲突的必要性。在这里,我们提出了一种新策略,包括将能够从强交联位点的酸碱离子对引入到致密且坚固的氢键网络中,以构建具有可调刚度和出色韧性的刚性自修复聚合物。为了展示这些独特的特征,聚合物被用作纤维增强气动致动器(FPA)内的应变调节层。FPA的配置多功能性和超分子聚合物的动态分子行为之间的特殊协同作用使致动器同时提高了运动灵活性,多模态,装载能力,鲁棒性,和耐用性。此外,在宏观和微观尺度上集成高灵活性的概念有望激发跨各个领域的智能而强大的设备的设计。
    Variable stiffness materials have shown considerable application in soft robotics. However, previously reported materials often struggle to reconcile high stiffness, stretchability, toughness, and self-healing ability, because of the inherently conflicting requisite of these properties in molecular design. Herein, we propose a novel strategy that involves incorporating acid-base ionic pairs capable of from strong crosslinking sites into a dense and robust hydrogen-bonding network to construct rigid self-healing polymers with tunable stiffness and excellent toughness. To demonstrate these distinct features, the polymer was employed to serve as the strain-regulation layers within a fiber-reinforced pneumatic actuator (FPA). The exceptional synergy between the configuration versatility of FPA and the dynamic molecular behavior of the supramolecular polymers equips the actuator with simultaneous improvement in motion dexterity, multimodality, loading capacity, robustness, and durability. Additionally, the concept of integrating high dexterity at both macro- and micro-scale is prospective to inspire the design of intelligent yet robust devices across various domains.
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  • 文章类型: Journal Article
    呋喃基生物质衍生化合物的选择性分离和转化,这与生物炼油厂密切相关,是目前的一个重要问题。为了提高他们的表现,重要的是加深对呋喃化合物在分离或催化剂基质上的分子识别的非共价相互作用的理解。这里,据报道,一种新方法可以使用多孔超分子晶体探针全面可视化此类分子间相互作用,该探针在由四个异构PdII3-大环组成的低对称纳米通道内具有极性和非极性结合位点。包括5-羟甲基糠醛的单晶X射线衍射分析,糠醛,糠醇,或2-乙酰基呋喃揭示了涉及它们的呋喃环和极性取代基的各种相互作用。还发现,客体和溶剂分子之间的合作和竞争效应显着改变了它们的识别模式。
    Selective separation and conversion of furan-based biomass-derived compounds, which are closely related to biorefineries, is currently an important issue. To improve their performance, it is important to deepen the understanding of non-covalent interactions that act on the molecular recognition of furanic compounds on separation or catalyst matrices. Here, a new method is reported to comprehensively visualize such intermolecular interactions using a porous supramolecular crystalline probe with polar and non-polar binding sites within a low-symmetric nanochannel consisting of four isomeric PdII 3-macrocycles. Single-crystal X-ray diffraction analysis of the crystals including 5-hydroxymethylfurfural, furfural, furfuryl alcohol, or 2-acetylfuran reveals a variety of interactions involving their furan rings and polar substituents. It is also found that cooperative and competitive effects between guest and solvent molecules significantly change their recognition mode.
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  • 文章类型: Journal Article
    基于聚合物的介电薄膜电容器由于其超高功率密度和超快速电荷存储/释放能力而成为电子和电力系统中必不可少的能量存储组件。尽管如此,它们相对较低的能量密度不能完全满足电力电子和脉冲功率系统的要求。在这里,通过构建氢键网络和拉伸取向策略,制备了基于具有边缘羟基化氮化硼纳米片(BNNS-OH)的铁电聚合物的可扩展复合介电膜。氮化硼上羟基的存在有助于在铁电聚合物内形成稳固的氢键网络,导致杨氏模量和优越的介电性能显著增加。此外,拉伸过程通过共价和氢键相互作用使BNNS-OH和氢键网络沿拉伸方向对齐,产生显著的抗拉强度(109兆帕),击穿强度(688MVm-1),和能量密度(28.2Jcm-3),性能优于最具代表性的基于聚合物的介电薄膜。结合制备工艺简单的优点,非凡的储能性能,和低成本的原材料,这种策略对于大规模生产具有高机械性能和介电性能的聚合物基介电薄膜是可行的,并为下一代储能应用的发展开辟了新的道路。
    Polymer-based dielectric film capacitors are essential energy storage components in electronic and power systems due to their ultrahigh power density and ultra-fast charge storage/release capability. Nonetheless, their relatively low energy density does not fully meet the requirements of power electronics and pulsed power systems. Herein, a scalable composite dielectric film based on a ferroelectric polymer with edge hydroxylated boron nitride nanosheets (BNNS-OH) is fabricated via the construction of a hydrogen bonding network and stretching orientation strategy. The presence of hydroxyl groups on boron nitride aids in forming a robust hydrogen bonding network within the ferroelectric polymer, leading to a significant increase in Young\'s modulus and superior dielectric performance. Furthermore, the stretching process aligns the BNNS-OH and the hydrogen bonding network along the drawing direction via covalent and hydrogen bonding interaction, resulting in a remarkable tensile strength (109 MPa), breakdown strength (688 MV m-1), and energy density (28.2 J cm-3), outperforming mostrepresentative polymer-based dielectric films. In combining the advantages of a simple preparation process, extraordinary energy storage performance, and low-cost raw materials, this strategy is viable for large-scale production of polymer-based dielectric films with high mechanical and dielectric performance and opens a new path for the development of next-generation energy storage applications.
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  • 文章类型: Journal Article
    这项研究提出了低共熔溶剂(DES)在脂肪酶催化的水解反应中作为磷酸盐缓冲液水溶液中的共溶剂的潜在作用。铵盐,比如氯化胆碱,与氢键供体配对,如尿素,1,2,3-丙三醇,和1,2丙二醇。用脂肪酶南极假丝酵母脂肪酶B(CALB)作为反应模型进行对硝基苯基月桂酸酯的水解,以评估溶剂效应,并在不同的DES/缓冲液磷酸盐混合物中以不同的%w/w进行测试。结果表明,两种不同DES的混合物在25%w/w是最有前途的溶剂,因为这个百分比增强了CALB的活动,其更高的催化效率(kcatKM)证明了这一点。溶剂分析表明,酶促反应需要富含水分子的反应介质,以使反应介质向酶促反应形成氢键。表明底物和酶活性位点之间有更好的相互作用。这种相互作用可以归因于高自由度影响反应介质给出的酶构象。这表明CALB在DES的存在下获得了更多的限制性结构,或者由混合物中水分子的氢键给出的稳定网络改善了酶活性,通过溶剂效应赋予构象稳定性。这项研究为真正绿色的工业溶剂的应用和进一步的观点提供了有希望的方法。
    This study presents the potential role of deep eutectic solvents (DESs) in a lipase-catalyzed hydrolysis reaction as a co-solvent in an aqueous solution given by a phosphate buffer. Ammonium salts, such as choline chloride, were paired with hydrogen bond donors, such as urea, 1,2,3-propanetriol, and 1,2 propanediol. The hydrolysis of p-nitrophenyl laureate was carried out with the lipase Candida antarctica Lipase B (CALB) as a reaction model to evaluate the solvent effect and tested in different DES/buffer phosphate mixtures at different % w/w. The results showed that two mixtures of different DES at 25 % w/w were the most promising solvents, as this percentage enhanced the activities of CALB, as evidenced by its higher catalytic efficiency (kcatKM). The solvent analysis shows that the enzymatic reaction requires a reaction media rich in water molecules to enable hydrogen-bond formation from the reaction media toward the enzymatic reaction, suggesting a better interaction between the substrate and the enzyme-active site. This interaction could be attributed to high degrees of freedom influencing the enzyme conformation given by the reaction media, suggesting that CALB acquires a more restrictive structure in the presence of DES or the stabilized network given by the hydrogen bond from water molecules in the mixture improves the enzymatic activity, conferring conformational stability by solvent effects. This study offers a promising approach for applications and further perspectives on genuinely green industrial solvents.
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  • 文章类型: Journal Article
    酪胺(TRM)是一种生物基儿茶酚胺神经递质,会引发偏头痛和高血压.使用添加剂环糊精(CD)减少并检测到食物中积累的TRM,而它们的关联特征尚不清楚。这里,进行了单晶X射线衍射和密度泛函理论(DFT)计算,证明了TRM碱/HCl在β-CD包合物中的难以捉摸的假多晶型物,β-CD·0.5TRM·7.6H2O(1)和β-CD·TRMHCl·4H2O(2)和罕见的α-CD·0.5(TRMHCl)·10H2O(3)排除复合物。1和2在圆形和椭圆形β-CD腔中共享具有相似TRM结构的共同包含模式,属于单斜空间群P21,具有相似的人字形填充结构。此外,3不同于2,因为较小的双重对称相关,圆形α-CD更喜欢具有双重无序TRM-H位点的排斥复合物。在正交P21212晶格中,α-CD以通道型结构封装,其中柱状空腔被无序的水场所占据。DFT结果表明,β-CD保持椭圆形,以适当地适应TRM,产生能量有利的夹杂复合物,这是由β-CD变形显著贡献的,与排阻模式相比,α-CD与TRM氨基乙基侧链的包合物在能量上也是有利的。这项研究表明CD对食品安全和药物/生物活性制剂和递送的影响。
    Tyramine (TRM) is a biogenic catecholamine neurotransmitter, which can trigger migraines and hypertension. TRM accumulated in foods is reduced and detected using additive cyclodextrins (CDs) while their association characteristics remain unclear. Here, single-crystal X-ray diffraction and density functional theory (DFT) calculation have been performed, demonstrating the elusive pseudopolymorphs in β-CD inclusion complexes with TRM base/HCl, β-CD·0.5TRM·7.6H2O (1) and β-CD·TRM HCl·4H2O (2) and the rare α-CD·0.5(TRM HCl)·10H2O (3) exclusion complex. Both 1 and 2 share the common inclusion mode with similar TRM structures in the round and elliptical β-CD cavities, belong to the monoclinic space group P21, and have similar herringbone packing structures. Furthermore, 3 differs from 2, as the smaller twofold symmetry-related, round α-CD prefers an exclusion complex with the twofold disordered TRM-H+ sites. In the orthorhombic P21212 lattice, α-CDs are packed in a channel-type structure, where the column-like cavity is occupied by disordered water sites. DFT results indicate that β-CD remains elliptical to suitably accommodate TRM, yielding an energetically favorable inclusion complex, which is significantly contributed by the β-CD deformation, and the inclusion complex of α-CD with the TRM aminoethyl side chain is also energetically favorable compared to the exclusion mode. This study suggests the CD implications for food safety and drug/bioactive formulation and delivery.
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