hybridization

杂交
  • 文章类型: Journal Article
    霍尔丹规则在生物学中占有特殊的地位,是物种形成的少数“规则”之一,在数百个物种的经验支持下。然而,它的经典权限在分类学上仅限于具有异形性染色体的生物体子集。我建议明确承认有关Haldane规则的广义假设,即广泛地在混合功能障碍中构建性别偏见,而与性系统无关。经典霍尔丹规则的共识观点认为,跨分类群的性别偏见混合功能障碍是一种复合现象,需要多种原因的解释。霍尔丹规则的多个替代假设的检验是,在许多情况下,适用于具有同态性染色体的类群,环境性别决定,单倍体,和雌雄同体。整合了跨越不同性系统的杂种的各种生物学现象,超越经典的霍尔丹规则,将有助于对导致进化差异和物种形成中可预测的性别偏见的力量和机制有更广泛的了解。
    Haldane\'s rule occupies a special place in biology as one of the few \'rules\' of speciation, with empirical support from hundreds of species. And yet, its classic purview is restricted taxonomically to the subset of organisms with heteromorphic sex chromosomes. I propose explicit acknowledgement of generalized hypotheses about Haldane\'s rule that frame sex bias in hybrid dysfunction broadly and irrespective of the sexual system. The consensus view of classic Haldane\'s rule holds that sex-biased hybrid dysfunction across taxa is a composite phenomenon that requires explanations from multiple causes. Testing of the multiple alternative hypotheses for Haldane\'s rule is, in many cases, applicable to taxa with homomorphic sex chromosomes, environmental sex determination, haplodiploidy, and hermaphroditism. Integration of a variety of biological phenomena about hybrids across diverse sexual systems, beyond classic Haldane\'s rule, will help to derive a more general understanding of the contributing forces and mechanisms that lead to predictable sex biases in evolutionary divergence and speciation.
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  • 文章类型: Journal Article
    DNA-蛋白质相互作用在多种生物学功能中起着重要作用。以基因为中心的方法用于鉴定已定义基因的上游调节因子。在这项研究中,我们开发了一种新的方法来捕获与某些染色质片段或DNA序列结合的蛋白质,这被称为反向染色质免疫沉淀(R-ChIP)。这项技术使用一组用生物素标记的特异性DNA探针来分离染色质或DNA片段,然后用质谱分析DNA相关蛋白。该方法可以捕获具有足够数量和纯度的DNA相关蛋白用于鉴定。
    DNA-protein interactions play fundamental roles in diverse biological functions. The gene-centered method is used to identify the upstream regulators of defined genes. In this study, we developed a novel method for capturing the proteins that bind to certain chromatin fragments or DNA sequences, which is called reverse chromatin immunoprecipitation (R-ChIP). This technology uses a set of specific DNA probes labeled with biotin to isolate chromatin or DNA fragments, and the DNA-associated proteins are then analyzed using mass spectrometry. This method can capture DNA-associated proteins with sufficient quantity and purity for identification.
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  • 文章类型: Journal Article
    随着数字图片在医疗行业的数量和意义不断增加,图像质量评估(IQA)最近已成为研究界的普遍主题。由于磁共振图像(MRI)可以经历的各种失真以及它们包含的各种信息,无参考图像质量评估(NR-IQA)一直是一个具有挑战性的研究问题。为了解决这个问题,提出了一种新颖的混合人工智能(AI)来分析海量MRI数据中的NR-IQ。首先,使用灰度游程长度矩阵(GLRLM)和EfficientNetB7算法从去噪的MRI图像中提取特征。接下来,提出了多目标爬行动物搜索算法(MRSA)用于最优特征向量选择。然后,提出了自进化深度信念模糊神经网络(SDBFN)算法用于有效的NR-IQ分析。本研究的实现是使用MATLAB软件执行的。将模拟结果与各种常规方法在相关系数(PLCC)方面进行了比较,均方根误差(RMSE),斯皮尔曼排序相关系数(SROCC)和肯德尔排序相关系数(KROCC),和平均绝对误差(MAE)。此外,我们提出的方法产生了大约比现有方法显著提高20%的质量,与目前的技术相比,PLCC参数显示出显着的增加。此外,与现有方法相比,RMSE数减少了12%。图形表示显示MRI膝关节数据集的平均MAE值为0.02,0.09的MRI大脑数据集,和0.098的MRI乳房数据集,与基线模型相比,MAE值显着降低。
    As the quantity and significance of digital pictures in the medical industry continue to increase, Image Quality Assessment (IQA) has recently become a prevalent subject in the research community. Due to the wide range of distortions that Magnetic Resonance Images (MRI) can experience and the wide variety of information they contain, No-Reference Image Quality Assessment (NR-IQA) has always been a challenging study issue. In an attempt to address this issue, a novel hybrid Artificial Intelligence (AI) is proposed to analyze NR-IQ in massive MRI data. First, the features from the denoised MRI images are extracted using the gray level run length matrix (GLRLM) and EfficientNet B7 algorithm. Next, the Multi-Objective Reptile Search Algorithm (MRSA) was proposed for optimal feature vector selection. Then, the Self-evolving Deep Belief Fuzzy Neural network (SDBFN) algorithm was proposed for the effective NR-IQ analysis. The implementation of this research is executed using MATLAB software. The simulation results are compared with the various conventional methods in terms of correlation coefficient (PLCC), Root Mean Square Error (RMSE), Spearman Rank Order Correlation Coefficient (SROCC) and Kendall Rank Order Correlation Coefficient (KROCC), and Mean Absolute Error (MAE). In addition, our proposed approach yielded a quality number approximately we achieved significant 20% improvement than existing methods, with the PLCC parameter showing a notable increase compared to current techniques. Moreover, the RMSE number decreased by 12% when compared to existing methods. Graphical representations indicated mean MAE values of 0.02 for MRI knee dataset, 0.09 for MRI brain dataset, and 0.098 for MRI breast dataset, showcasing significantly lower MAE values compared to the baseline models.
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  • 文章类型: Journal Article
    这项研究历时6年零4代,涉及南非卡拉哈里山羊(SK)和贵州黑山羊(GB)三代的逐步杂交,第四代交叉固定F3与F1,伴随着使用分子标记技术来选择高生育率人群,结果创造了杂交山羊,BKF4(11/16SK谱系和5/16GB谱系)。对BKF4杂种及其亲本品种进行了比较评价。GB的繁殖和生产参数,SK,和BKF4山羊组进行监测,包括羔羊率(LR),生存率(SR),3月龄时的每日体重增加(DWG),和成人体重(ABW)(每组n=110、106、112)。此外,进行了更衣百分比(DP)(每组n=12)以及氨基酸(每组n=8、6、10)和脂肪酸(每组n=6)的分析,以评估肉质指标。结果:(1)生殖和生产性能:LR指数达到199%,显著高于GB和SK(p≤0.001),SR为95.0%,显著高于SK(p≤0.001);DWG为276.5g,ABW达到56.6kg,敷料百分比(DP)为54.5%,它们显著超过GB(p≤0.001)。(2)关于肉质:pH45值和粗蛋白含量(CP)增加,而肌内脂肪含量较GB增加,灰分含量下降。氨基酸组成与GB相似,但味道更像SK。然而,对脂肪酸组成和功能有一些负面影响。(3)PCA分析表明:BKF4与GB和SK相比,表现出优异的肉质,受解释方差占83.49%和16.51%的两个关键因素的影响,分别。影响肉质的关键因素包括肌内脂肪(IMF)、营养指数(NI),PUFA/MUFA,n-6FA,和滴水损失(DL)。
    This study spanned 6 years and 4 generations, involving the progressive crossbreeding of South African Kalahari Goat (SK) and Guizhou Black Goat (GB) over three generations, followed by cross fixation F3 with F1 in the fourth generation, accompanied by the use of molecular markers technology to select a high fertility population, resulting in the creation of a hybrid goat, BKF4 (11/16 SK lineage and 5/16 GB lineage). A comparative evaluation of the BKF4 hybrid breed and its parental breeds was conducted. Reproductive and production parameters of GB, SK, and BKF4 goat groups were monitored, including lambing rate (LR), survival rate (SR), daily weight gain at 3 months of age (DWG), and adult body weight (ABW) (n = 110, 106, 112 per group). In addition, dressing percentage (DP) (n = 12 per group) and analyses of amino acids (n = 8, 6, 10 per group) and fatty acids (n = 6 per group) were conducted to evaluate meat quality indicators. Results: (1) Reproductive and production performance: The index of LR reached 199%, significantly higher than GB and SK (p ≤ 0.001), with a SR of 95.0%, markedly higher than SK (p ≤ 0.001); DWG was 276.5 g, ABW reached 56.6 kg and with a dressing percentage (DP) of 54.5%, they are significantly surpassing GB (p ≤ 0.001). (2) Regarding meat quality: pH45-value and crude protein content (CP) increased, while intramuscular fat content increased compared to GB and ash content decreased. The amino acid composition was similar to GB, but the taste was more similar to SK. However, there were some negative impacts on fatty acid composition and functionality. (3) PCA analysis revealed that: BKF4 exhibited superior meat quality compared to GB and SK, influenced by two key factors contributing 83.49% and 16.51% to the explained variance, respectively. The key factors affecting meat quality include intramuscular fat (IMF), nutrient index (NI), PUFAs/MUFAs, n-6FAs, and drip loss (DL).
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  • 文章类型: Journal Article
    肉桂酸是一种特权支架,用于设计具有推定抗癌潜力的生物活性化合物,遵循不同的合成方法和程序。由于需要生产有效的抗癌药物,肉桂酸酯部分可以显着有助于设计新的和更有活性的抗癌剂。
    在这篇评论中,作者对发现具有抗癌潜力的肉桂酸衍生物的合成方法进行了综述。分子模拟的结果,杂交,给出了化学衍生化以及体外生物学实验和结构活性关系,描述,并由作者讨论。作用机制的信息取自原始文献来源。
    作者建议(i)需要考虑生物学药理学的许多领域:选择性,体内研究,毒性和药物相似性,动物和人类的作用机制,开发针对各种癌症类型的更有效的测定法;(ii)杂交技术在发现和生产具有更高活性和更大选择性的化合物方面的平衡;(iii)重新定位提供了新的抗癌肉桂剂。
    UNASSIGNED: Cinnamic acid is a privileged scaffold for the design of biologically active compounds with putative anticancer potential, following different synthetic methodologies and procedures. Since there is a need for the production of potent anticancer, cinnamate moiety can significantly contribute in the design of new and more active anticancer agents.
    UNASSIGNED: In this review, the authors provide a review on the synthetic approaches for the discovery of cinnamic acid derivatives with anticancer potential. Results from molecular simulations, hybridization, and chemical derivatization along with biological experiments in vitro and structural activity relationships are given, described, and discussed by the authors. Information for the mechanism of action is taken from original literature sources.
    UNASSIGNED: The authors suggest that (i) numerous areas of biology-pharmacology need to be considered: selectivity, in vivo studies, toxicity and drug-likeness, the mechanism of action in animals and humans, development of more efficient assays for various cancer types; (ii) hybridization techniques outbalance in the discovery and production of compounds with higher activity and greater selectivity; (iii) repositioning offers new anticancer cinnamic agents.
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  • 文章类型: Journal Article
    由于着丝粒包含大量串联重复的卫星DNA,因此理解着丝粒在染色体进化和物种形成中的作用变得复杂。这阻碍了高质量的组装。这里,我们使用长读测序来生成四个核型不同的Papaver物种的几乎完整的基因组组装体,P.setigerum(2n=44),P.somniferum(2n=22),P.rhoeas(2n=14),和P.bracteatum(2n=14),共同代表45个无间隙中心粒。我们确定了四个着丝粒卫星(cenSat)家族,并通过实验验证了两个代表。对于两个异源多倍体基因组(P。SomniferumandP.setigerum),我们表征了每个卫星的亚基因组分布,并确定了杂交后着丝粒进化的“均质化”阶段。着丝粒周围区域的种间比较进一步揭示了广泛的着丝粒介导的染色体重排。把这些结果放在一起,我们提出了一个模型,用于研究杂交后的cenSat竞争,并进一步阐明了着丝粒在物种形成中的复杂作用。
    Understanding the roles played by centromeres in chromosome evolution and speciation is complicated by the fact that centromeres comprise large arrays of tandemly repeated satellite DNA, which hinders high-quality assembly. Here, we used long-read sequencing to generate nearly complete genome assemblies for four karyotypically diverse Papaver species, P. setigerum (2n = 44), P. somniferum (2n = 22), P. rhoeas (2n = 14), and P. bracteatum (2n = 14), collectively representing 45 gapless centromeres. We identified four centromere satellite (cenSat) families and experimentally validated two representatives. For the two allopolyploid genomes (P. somniferum and P. setigerum), we characterized the subgenomic distribution of each satellite and identified a \"homogenizing\" phase of centromere evolution in the aftermath of hybridization. An interspecies comparison of the peri-centromeric regions further revealed extensive centromere-mediated chromosome rearrangements. Taking these results together, we propose a model for studying cenSat competition after hybridization and shed further light on the complex role of the centromere in speciation.
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  • 文章类型: Journal Article
    钙钛矿和电荷传输层之间的界面电荷转移在决定钙钛矿太阳能电池性能方面起着关键作用。传统观点强调两个分量的有利能级对准的必要性。在最近的报道中,有效的电子转移是观察到从钙钛矿到富勒烯基电子传输层,即使有不利的能级排列,但机制尚不清楚。这里,使用超快原位双光子光电子能谱,报告了在时间和能量维度上对CsPbI3/C60界面上的电子转移过程的实时观察。由于强电子耦合,在界面处产生大量的界面混合态,在≈124fs中帮助快速光诱导电子转移。非绝热分子动力学模拟和瞬态吸收实验进一步验证了这一过程。短时间尺度解释了为什么电子转移可以克服不利的能级排列,为设备设计提供指导。
    Interfacial charge-transfer between perovskite and charge-transport layers plays a key role in determining performance of perovskite solar cells. The conventional viewpoint emphases the necessity of favorable energy-level alignment of the two components. In recent reports, efficient electron-transfer is observed from perovskite to fullerene-based electron-transport layers even when there are unfavorable energy-level alignments, but the mechanism is still unclear. Here, using an ultrafast in situ two-photon photoelectron spectroscopy, real-time observations of electron-transfer processes at CsPbI3/C60 interface in both temporal and energetic dimensions are reported. Due to strong electronic coupling, a large amount of interfacial hybrid states is generated at the interfaces, aiding fast photoinduced electron-transfer in ≈124 fs. This process is further verified by nonadiabatic molecular dynamics simulations and transient absorption experiments. The short timescale explains why electron-transfer can overcome unfavorable energy-level alignments, providing a guideline for device design.
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  • 文章类型: Journal Article
    目的:透明息肉,夏威夷群岛特有的蕨类植物,包括五个生态和形态可变的亚种,这表明了一个复杂的历史,涉及迅速的分歧和猖獗的杂交。
    方法:我们使用了大量的目标捕获数据集来研究遗传进化,形态学,透明假单胞菌的生态变异。在五个夏威夷群岛进行了广泛的采样,我们破译了透明假单胞菌的进化史,鉴定出的非杂种谱系和种内杂种,并推断了地理和生态对其分布的相对影响。
    结果:透明息肉是单系的,分散到夏威夷群岛11.53-7.77Ma,并分散到5.66至4.73Ma之间的现存分支。我们确定了四个具有独特形态的非混合进化枝,生态位,和分布。此外,我们阐明了几种种内杂种组合,并证明了未被发现或灭绝的“幽灵”谱系有助于现存的杂种种群。
    结论:我们为修正透明假单胞菌的分类法以解释隐秘谱系和种内杂种提供了基础。夏威夷群岛通过火山活动周期的地质演替,植物演替,和侵蚀决定了可用的栖息地和生态特定的分布,透明疟原虫内的发散枝。种内杂种可能是由于生态和/或地质转变而出现的,通常在祖先局部灭绝后持续存在。这项研究有助于我们了解夏威夷多样化的蕨类植物群和照明隐秘类群的进化,以便更好地进行保护工作。
    OBJECTIVE: Polypodium pellucidum, a fern endemic to the Hawaiian Islands, encompasses five ecologically and morphologically variable subspecies, suggesting a complex history involving both rapid divergence and rampant hybridization.
    METHODS: We employed a large target-capture data set to investigate the evolution of genetic, morphological, and ecological variation in P. pellucidum. With a broad sampling across five Hawaiian Islands, we deciphered the evolutionary history of P. pellucidum, identified nonhybrid lineages and intraspecific hybrids, and inferred the relative influence of geography and ecology on their distributions.
    RESULTS: Polypodium pellucidum is monophyletic, dispersing to the Hawaiian archipelago 11.53-7.77 Ma and diversifying into extant clades between 5.66 and 4.73 Ma. We identified four nonhybrid clades with unique morphologies, ecological niches, and distributions. Additionally, we elucidated several intraspecific hybrid combinations and evidence for undiscovered or extinct \"ghost\" lineages contributing to extant hybrid populations.
    CONCLUSIONS: We provide a foundation for revising the taxonomy of P. pellucidum to account for cryptic lineages and intraspecific hybrids. Geologic succession of the Hawaiian Islands through cycles of volcanism, vegetative succession, and erosion has determined the available habitats and distribution of ecologically specific, divergent clades within P. pellucidum. Intraspecific hybrids have likely arisen due to ecological and or geological transitions, often persisting after the local extinction of their progenitors. This research contributes to our understanding of the evolution of Hawai\'i\'s diverse fern flora and illuminated cryptic taxa to allow better-informed conservation efforts.
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  • 文章类型: Journal Article
    杂交和渗入是复杂的进化机制,可以增加物种多样性并导致物种形成,但也可能导致物种灭绝。在这项研究中,我们测试了稀有和厄瓜多尔特有的O.loxensisvanderWerff和广泛的O.infrafoveolatavanderWerff(Lauraceae)之间杂交的存在和遗传后果。表型,有些树很难辨认,我们预计有些实际上可能是神秘的混血儿。因此,我们开发了核微卫星来评估杂种的存在,以及异源和同胞种群的遗传多样性和种群结构的模式。结果显示了高水平的遗传多样性,即使是在罕见的O.loxensis,同胞通常明显高于异族。将个体划分为不同遗传类别的贝叶斯分配揭示了一个复杂的情况,在所有同胞种群中都发生了不同的杂种世代,而且是异形的。一些回交杂种的缺乏表明不对称基因流的存在,有些混血儿可能比其他混血儿更合身。当前和过去种间基因流的存在也解释了这些物种中物种边界的模糊,并且可能与在Ocotea中发现的高物种比率有关。
    Hybridization and introgression are complex evolutionary mechanisms that can increase species diversity and lead to speciation, but may also lead to species extinction. In this study, we tested the presence and genetic consequences of hybridization between the rare and Ecuadorian endemic O. loxensis van der Werff and the widespread O. infrafoveolata van der Werff (Lauraceae). Phenotypically, some trees are difficult to identify, and we expect that some might in fact be cryptic hybrids. Thus, we developed nuclear microsatellites to assess the existence of hybrids, as well as the patterns of genetic diversity and population structure in allopatric and sympatric populations. The results revealed high levels of genetic diversity, even in the rare O. loxensis, being usually significantly higher in sympatric than in allopatric populations. The Bayesian assignment of individuals into different genetic classes revealed a complex scenario with different hybrid generations occurring in all sympatric populations, but also in allopatric ones. The absence of some backcrossed hybrids suggests the existence of asymmetric gene flow, and that some hybrids might be more fitted than others might. The existence of current and past interspecific gene flow also explains the blurring of species boundaries in these species and could be linked to the high rates of species found in Ocotea.
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  • 文章类型: Journal Article
    背景:反义寡核苷酸(ASO)已与各种部分缀合,如肽,抗体或抗体的Fab区,以增强它们向目标组织的输送。游离ASO(ASO有效载荷)的定量对于在递送肽/抗体/FabASO缀合物之后表征其药代动力学/药效学(PK/PD)性质和生物分布是关键的。结果:我们开发了基于杂交的LC-MS/MS方法,用于在Fab-ASO和具有接头(ASO-接头)的ASO存在下定量组织中的游离ASO。结论:该方法可用于准确测量Fab-ASO给药小鼠肝脏和腓肠肌中游离ASO的浓度。该方法也已应用于各种组织和血浆/血清样品中其他抗体-ASO和Fab-ASO缀合物的游离ASO生物分析。
    [方框:见正文]。
    Background: Antisense oligonucleotides (ASOs) have been conjugated to various moieties, such as peptides, antibodies or Fab regions of antibodies, to enhance their delivery to target tissues. The quantitation of free ASO (ASO payload) is critical to characterize its pharmacokinetics/pharmacodynamics (PK/PD) properties and biodistribution after delivery of the peptide/antibody/Fab ASO conjugates. Results: We developed a hybridization-based LC-MS/MS methodology for quantification of free ASO in tissues in the presence of Fab-ASO and ASO with linker (ASO-linker). Conclusion: The developed method was applied to measure accurately the free ASO concentrations in liver and gastrocnemius in mice that were dosed with Fab-ASO. This methodology has also been applied to free ASO bioanalysis for other antibody-ASO and Fab-ASO conjugates in various tissues and plasma/serum samples.
    [Box: see text].
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