hotspot

热点
  • 文章类型: Published Erratum
    [这更正了文章DOI:10.3389/fpubh.2023.1136939。].
    [This corrects the article DOI: 10.3389/fpubh.2023.1136939.].
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  • 文章类型: Journal Article
    淡水环境是废水和废水的主要接收系统,其中携带低浓度的抗生素和抗微生物药物抗性(AMR)细菌和基因。因此,水生微生物群落暴露于环境相关浓度的抗生素(ERCA),这可能会影响环境AMR的获取和传播。这里,我们分析了在有或没有额外存在城市污水处理厂废水(W)和猪粪径流(M)的情况下对水生生物膜抗性的ERCA暴露。显微分析显示生物分类多样性和生物膜结构完整性下降,而宏基因组分析显示抗性增加,毒力,和移动元素相关基因在最高的ERCA暴露水平,当仅暴露于W或M流出物时,观察到的影响不太明显。微生物功能预测表明,在ERCA条件下,与能量和细胞膜代谢以及重金属抗性相关的基因丰度增加。当整个社区暴露于抗菌药物敏感性测试时,对抗性机制增加的计算机预测与观察到的表型抗性模式无关。这揭示了对选择压力的物理和遗传反应的整个社区协调的复杂性的重要见解。最后,宏基因组数据的环境AMR风险评估显示,亚MIC抗生素条件下生长的生物膜的风险评分较高.
    Freshwater environments are primary receiving systems of wastewater and effluents, which carry low concentrations of antibiotics and antimicrobial-resistant (AMR) bacteria and genes. Aquatic microbial communities are thus exposed to environmentally relevant concentrations of antibiotics (ERCA) that presumably influence the acquisition and spread of environmental AMR. Here, we analyzed ERCA exposure with and without the additional presence of municipal wastewater treatment plant effluent (W) and swine manure run-off (M) on aquatic biofilm resistomes. Microscopic analyses revealed decreased taxonomic diversity and biofilm structural integrity, while metagenomic analysis revealed an increased abundance of resistance, virulence, and mobile element-related genes at the highest ERCA exposure levels, with less notable impacts observed when solely exposed to W or M effluents. Microbial function predictions indicated increased gene abundance associated with energy and cell membrane metabolism and heavy metal resistance under ERCA conditions. In silico predictions of increased resistance mechanisms did not correlate with observed phenotypic resistance patterns when whole communities were exposed to antimicrobial susceptibility testing. This reveals important insight into the complexity of whole-community coordination of physical and genetic responses to selective pressures. Lastly, the environmental AMR risk assessment of metagenomic data revealed a higher risk score for biofilms grown at sub-MIC antibiotic conditions.
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  • 文章类型: Journal Article
    目的:分析白内障领域人工智能(AI)研究的热点和趋势。
    方法:WebofScienceCoreCollection的科学引文索引扩展用于收集白内障领域与AI相关的研究文献,分析了有价值的信息,例如年份,国家/地区,期刊,机构,引文,和关键词。通过图书馆在线分析平台生成可视化共现网络图,VOSviewer,和CiteSpace工具。
    结果:共选择了来自41个国家的222篇相关研究文章。自2019年以来,相关文章的数量每年都在大幅增加。中国(n=82,24.92%),美国(n=55,16.72%)和印度(n=26,7.90%)是出版物最多的三个国家,占总数的49.54%。白内障和屈光手术杂志(n=13,5.86%)和转化视觉科学与技术(n=10,4.50%)的出版物最多。中山大学(n=25,11.26%),中国科学院(n=17,7.66%),和首都医科大学(n=16,7.21%)是出版物数量最多的三个机构。我们通过关键词分析发现白内障,诊断,成像,分类,人工晶状体,和公式是当前研究的主要课题。
    结论:本研究揭示了AI在白内障诊断和人工晶状体屈光力计算方面的热点和潜在趋势。未来,人工智能将在眼科领域变得更加普遍。
    OBJECTIVE: To analyze the hotspots and trends in artificial intelligence (AI) research in the field of cataracts.
    METHODS: The Science Citation Index Expanded of the Web of Science Core Collection was used to collect the research literature related to AI in the field of cataracts, which was analyzed for valuable information such as years, countries/regions, journals, institutions, citations, and keywords. Visualized co-occurrence network graphs were generated through the library online analysis platform, VOSviewer, and CiteSpace tools.
    RESULTS: A total of 222 relevant research articles from 41 countries were selected. Since 2019, the number of related articles has increased significantly every year. China (n = 82, 24.92%), the United States (n = 55, 16.72%) and India (n = 26, 7.90%) were the three countries with the most publications, accounting for 49.54% of the total. The Journal of Cataract and Refractive Surgery (n = 13, 5.86%) and Translational Vision Science & Technology (n = 10, 4.50%) had the most publications. Sun Yat-sen University (n = 25, 11.26%), the Chinese Academy of Sciences (n = 17, 7.66%), and Capital Medical University (n = 16, 7.21%) are the three institutions with the highest number of publications. We discovered through keyword analysis that cataract, diagnosis, imaging, classification, intraocular lens, and formula are the main topics of current study.
    CONCLUSIONS: This study revealed the hot spots and potential trends of AI in terms of cataract diagnosis and intraocular lens power calculation. AI will become more prevalent in the field of ophthalmology in the future.
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  • 文章类型: Journal Article
    配体结合热点是与小分子药效团形成特别有利的相互作用的蛋白质表面区域。与这些热点的靶向相互作用使配体结合的效率最大化。现有的方法能够识别热点,但通常缺乏定量配体结合和在这些位点处直接加工的测定。在这里,我们描述了一个基于片段的竞争性19F配体基NMR(LB-NMR)筛选平台,使常规,定量配体谱分析集中在配体结合热点。作为概念的证明,该方法适用于脓肿分枝杆菌(Mabs)的4'-磷酸泛素腺苷酰转移酶(PPAT)。来自960成员片段筛选的命中的X射线晶体学表征鉴定了跨PPAT活性位点的三个配体结合热点。从片段点击中设计并合成了19F记者候选人的集合。通过严格的优先级排序和优化工作流程的使用,为每个热点生成单个19F报告分子。通过竞争性19FLB-NMR分析一组结构特征的配体与这组19F报告基因的结合,概括了ITC和X射线晶体学进行的结合亲和力和位点ID分配。这种在热点水平分辨率下的配体结合事件的定量作图建立了基于片段的竞争性19FLB-NMR筛选平台用于热点指导的配体谱分析的实用性。
    Ligand binding hotspots are regions of protein surfaces that form particularly favourable interactions with small molecule pharmacophores. Targeting interactions with these hotspots maximises the efficiency of ligand binding. Existing methods are capable of identifying hotspots but often lack assays to quantify ligand binding and direct elaboration at these sites. Herein, we describe a fragment-based competitive 19F Ligand Based-NMR (LB-NMR) screening platform that enables routine, quantitative ligand profiling focused at ligand-binding hotspots. As a proof of concept, the method was applied to 4\'-phosphopantetheine adenylyltransferase (PPAT) from Mycobacterium abscessus (Mabs). X-ray crystallographic characterisation of the hits from a 960-member fragment screen identified three ligand-binding hotspots across the PPAT active site. From the fragment hits a collection of 19F reporter candidates were designed and synthesised. By rigorous prioritisation and use of optimisation workflows, a single 19F reporter molecule was generated for each hotspot. Profiling the binding of a set of structurally characterised ligands by competitive 19F LB-NMR with this suite of 19F reporters recapitulated the binding affinity and site ID assignments made by ITC and X-ray crystallography. This quantitative mapping of ligand binding events at hotspot level resolution establishes the utility of the fragment-based competitive 19F LB-NMR screening platform for hotspot-directed ligand profiling.
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  • 文章类型: Journal Article
    背景:近年来,像COVID-19这样的传染病对全球社会经济产生了深远的影响。mRNA疫苗由于其快速发展而获得了突出的地位,工业适应性,简单,以及对新变种的反应能力。值得注意的是,2023年诺贝尔生理学或医学奖承认对mRNA疫苗研究的重大贡献。
    方法:我们的研究使用了WebofScienceCoreCollection(WoSCC)数据库进行了全面的文献计量分析,涵盖2003年至2023年关于mRNA疫苗的5512篇论文。我们制作了合作地图,共同引文分析,和关键词聚类来评估该领域的发展历史和成就。
    结果:分析产生了突出国家/机构的知识图谱,有影响力的作家,经常出版和被高度引用的期刊,和开创性的参考文献。正在进行的研究热点包括免疫反应,稳定性增强,在癌症预防和治疗中的应用,并利用mRNA技术防治传染病。
    结论:mRNA疫苗代表了传染病预防的变革发展。这项研究提供了对该领域发展的见解,并确定了关键的研究重点,促进疫苗技术的进步和应对未来的挑战。
    BACKGROUND: In recent years, infectious diseases like COVID-19 have had profound global socio-economic impacts. mRNA vaccines have gained prominence due to their rapid development, industrial adaptability, simplicity, and responsiveness to new variants. Notably, the 2023 Nobel Prize in Physiology or Medicine recognized significant contributions to mRNA vaccine research.
    METHODS: Our study employed a comprehensive bibliometric analysis using the Web of Science Core Collection (WoSCC) database, encompassing 5,512 papers on mRNA vaccines from 2003 to 2023. We generated cooperation maps, co-citation analyses, and keyword clustering to evaluate the field\'s developmental history and achievements.
    RESULTS: The analysis yielded knowledge maps highlighting countries/institutions, influential authors, frequently published and highly cited journals, and seminal references. Ongoing research hotspots encompass immune responses, stability enhancement, applications in cancer prevention and treatment, and combating infectious diseases using mRNA technology.
    CONCLUSIONS: mRNA vaccines represent a transformative development in infectious disease prevention. This study provides insights into the field\'s growth and identifies key research priorities, facilitating advancements in vaccine technology and addressing future challenges.
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  • 文章类型: Systematic Review
    肠道微生物群与脂质之间的关联已经引起了极大的学术兴趣。本研究分析了有关肠道菌群和脂质的相关文献,为未来的进展和研究方向提供科学指导。
    关注肠道微生物群和脂质的文章来自WebofScience核心合集(WoSCC)。经过严格的筛选,研究中纳入了12,693篇文章。使用CiteSpace等各种学术工具对收集的数据进行了全面处理和可视化分析,VOSviewer,R软件,和ScimagoGraphica.
    肠道微生物群及其与主要脂质的关系领域见证了学术关注的显着激增,如相关文章中观察到的上升趋势所示。在国家中,中国已成为出版物产出的主要贡献者,中国AcadSci是这一领域最多产的机构。值得注意的是,《营养素》和《自然》是著名的期刊,发表了许多文章,并获得了最多的共同引用。学者们广泛认可PatriceDCani在这一领域的杰出贡献。目前的研究工作集中在肥胖上,胰岛素抵抗,新陈代谢,增长业绩,肠-脑轴,和其他人。
    我们的分析确定了四个主要研究趋势:“生化途径,“\”探索疾病,“”干预和效果,“和”健康和饮食。“未来的学者必须更多地关注肠道微生物群和主要脂质,以促进我们对人类健康的理解。
    UNASSIGNED: The association between intestinal microbiota and lipids has garnered significant scholarly interest. This study analyzes pertinent literature on intestinal microbiota and lipids to offer scientific guidance for future advancements and research directions.
    UNASSIGNED: Articles focusing on intestinal microbiota and lipids were obtained from the Web of Science Core Collection (WoSCC). Following a rigorous screening process, 12,693 articles were included in the study. The collected data was processed comprehensively and visually analyzed using various academic tools such as CiteSpace, VOSviewer, R software, and Scimago Graphica.
    UNASSIGNED: The field of intestinal microbiota and its relationship with major lipids has witnessed a significant surge in scholarly attention, as indicated by the upward trend observed in related articles. Among countries, China had emerged as the leading contributor in publication output, with Chinese Acad Sci being the most prolific institution in this field. Notably, Nutrients and Nature were the prominent journals that published many articles and garnered the highest number of co-citations. Scholars have widely recognized Patrice D Cani\'s notable contributions in this field. Current research endeavors have focused on obesity, insulin resistance, metabolism, growth performance, the gut-brain axis, and others.
    UNASSIGNED: Our analysis identified four primary research trends: \"biochemical pathways,\" \"exploration of diseases,\" \"intervention and effect,\" and \"health and diet.\" Future scholars must devote more attention to intestinal microbiota and major lipids to advance our understanding of human health.
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  • 文章类型: Journal Article
    虽然不常见,通过跳跃自杀几乎总是致命的,并且由于包括桥梁和其他高风险地点在内的高建筑物的可用性,可以在局部显着升高。经验证据表明,限制使用某些自杀方法对预防自杀非常有效,促使在许多高风险跳跃地点建造物理屏障。然而,一些人认为,这些措施成本太高,只会导致方法或地点替代。
    检查物理障碍是否有效防止跳跃自杀或方法或位置替代是否发生。
    对最具代表性的文献进行综合评述。
    结果清楚地表明,物理障碍在通过跳跃而几乎没有方法或位置替代发生时非常有效地预防自杀。此外,他们的成本远远超过了避免自杀的金钱利益。
    使用意大利前高山/高山地区作为范例,我们认为,当地的地形和社会经济的特殊性导致自杀率显著升高,尤其是跳桥自杀,特别是在年轻人中,他们更容易受到经济危机的影响,并且对冲动行为表现出更高的敏感性,与跳跃自杀有关的已知特征,这使得这个问题更加局部和临床相关。由于这些发现很容易推广到具有相似地形和/或经济特征的其他地区,我们以行动呼吁结束,敦促地方当局听取科学证据,并采取必要步骤改善自杀预防。
    UNASSIGNED: Although uncommon, suicide by jumping is almost always lethal and can be significantly elevated locally due to the availability of tall structures including bridges and other high-risk locations. Empirical evidence suggests that restricting access to certain suicide methods is highly effective at preventing suicide, prompting the construction of physical barriers in many high-risk jumping locations. However, some have argued that these measures are too costly and only lead to method or location substitution.
    UNASSIGNED: To examine whether physical barriers are effective at preventing suicide by jumping or whether method or location substitution occur.
    UNASSIGNED: An integrative review of the most representative literature.
    UNASSIGNED: Results clearly show that physical barriers are highly effective at preventing suicide by jumping with little to no method or location substitution occurring. Furthermore, their cost is far outweighed by the monetary benefits of averted suicides.
    UNASSIGNED: Using the Italian pre-alpine/alpine areas as a paradigm, we argue that local topography and socioeconomic particularities led to significantly elevated rates of suicide in general, and of suicide by jumping from bridges in particular, especially among young adults who are more vulnerable to economic crises and show elevated susceptibility to impulsive acts, a known characteristic associated with suicide by jumping, which makes the issue even more topical and clinically relevant. As these finding are easily generalized to other territories with similar topographical and/or economic characteristics, we end with a call to action, urging local authorities to heed the scientific evidence and take the necessary steps to improve suicide prevention.
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  • 文章类型: Journal Article
    热点是形成高强度电磁区域,例如,在等离子体纳米聚集体的间质上,导致增强因子大幅上升。然而,实现特定的纳米几何形状以及捕获热点细节的合适技术是不可避免的。我们报道了吸附有少量目标分析物的明确定义的金纳米聚集体的近场表面增强拉曼散射(SERS)光谱。使用孔径近场扫描光学显微镜(a-NSOM)的光谱和空间分辨SERS测量装置有助于通过SERS直接观察间隙处的局部电磁(EM)场。相关的光学图像和相应的纳米几何形状通过家庭建造的a-NSOM设置捕获。在不同的目的位点记录近场SERS光谱。很明显,位于四聚体中心的间隙提供了最强的拉曼散射,暗示其中存在SERS活跃热点的可能性。在同一热点记录的拉曼活性染料罗丹明6G光谱的SERS谱带与迄今为止报道的谱带吻合得很好。值得注意的是,这种风景中的大多数SERS乐队都得到了增强。这种具有高空间分辨率的直接观测对于理解“热点”处的局部EM场的起源以及SERS过程中的EM增强因子是必不可少的。进行了时域有限差分(FDTD)分析以验证结果。
    Hotspots are high-intensity electromagnetic zones that form, for example, at the interstitials of plasmonic nanoaggregates, resulting in a considerable rise in the enhancement factor. However, it is inevitable to achieve specific nanometric geometry as well as a suitable technique to capture the details of hotspots. We report near-field surface-enhanced Raman scattering (SERS) spectroscopy of a well-defined gold nanoaggregate of a few nanoparticles adsorbed with a small number of target analytes. A spectrally and spatially resolved SERS measurement setup using an aperture near-field scanning optical microscope (a-NSOM) facilitated the direct observation of localized electromagnetic (EM) fields at the interstitials through SERS. Correlated optical image and corresponding nanometric geometry were captured through the home-built a-NSOM setup. Near-field SERS spectra were recorded at different sites of interest. It was evident that the interstitial positioned at the center of the tetramer provided the most intense Raman scattering, implying the possibility of a SERS-active hotspot therein. SERS bands of the spectrum of the Raman-active dye Rhodamine 6G recorded at the same hotspot coincided well with those reported so far. It was noteworthy that most of the SERS bands in such scenery got enhanced. Such direct observation with high spatial resolution is indispensable to understanding the origin of localized EM fields at \"hotspots\" and the EM enhancement factor in the SERS process. A finite-difference time-domain (FDTD) analysis was carried out to validate the results.
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  • 文章类型: Journal Article
    背景:我们最近开发了两种高分辨率方法,用于对两种突出的DNA损伤类型进行全基因组定位,单链DNA断裂(SSB)和无碱基(AP)位点,并在哺乳动物基因组中发现了这些病变的高度复杂和非随机模式。SSB和AP位点的一个显著特征是两个病变都存在单核苷酸热点。
    结果:在这项工作中,我们显示SSB热点富集在多个正常哺乳动物组织的转录起始位点(TSS)附近,然而,富集的程度随组织类型而显著变化,并且似乎仅限于基因的子集。TSS周围的SSB热点在模板链上富集,并与相应基因的较高表达相关。有趣的是,SSB热点似乎至少部分是由AP位点的碱基切除修复(BER)途径产生的。
    结论:我们的研究结果强调了DNA损伤与基因表达调控之间的复杂关系,并表明了一种令人兴奋的可能性,即TSS上的SSB可能充当DNA损伤的传感器,以激活对DNA损伤反应重要的基因。
    BACKGROUND: We recently developed two high-resolution methods for genome-wide mapping of two prominent types of DNA damage, single-strand DNA breaks (SSBs) and abasic (AP) sites and found highly complex and non-random patterns of these lesions in mammalian genomes. One salient feature of SSB and AP sites was the existence of single-nucleotide hotspots for both lesions.
    RESULTS: In this work, we show that SSB hotspots are enriched in the immediate vicinity of transcriptional start sites (TSSs) in multiple normal mammalian tissues, however the magnitude of enrichment varies significantly with tissue type and appears to be limited to a subset of genes. SSB hotspots around TSSs are enriched on the template strand and associate with higher expression of the corresponding genes. Interestingly, SSB hotspots appear to be at least in part generated by the base-excision repair (BER) pathway from the AP sites.
    CONCLUSIONS: Our results highlight complex relationship between DNA damage and regulation of gene expression and suggest an exciting possibility that SSBs at TSSs might function as sensors of DNA damage to activate genes important for DNA damage response.
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  • 文章类型: Journal Article
    北德维纳河是进入白海和巴伦支海的微塑料污染的主要来源之一。这条河的沿海和底部沉积物作为微塑料的转移环节发挥着重要作用。采用Py-GC/MS和μFT-IR法,发现沉积物含有高达350毫克/千克或650颗粒/千克的微塑料(干重)。河流分支区独特的水文条件促成了微塑料污染热点的形成。热点积累了>30%的微塑料污染,主要是ABS塑料颗粒小于0.3毫米的粗糙度和裂纹,这增加了微塑料污染的危害等级(从II到IV)。获得的数据和污染的年高变化表明,该地区是一个积累的地方,微塑料的降解和逐渐释放到白海和巴伦支海,即进入北极地区。
    The Northern Dvina River is one of the main sources of microplastic pollution entering to the White and Barents Seas. The coastal and bottom sediments of this river play an important role as a transfer link of microplastics. With Py-GC/MS and μFT-IR methods, it was found that the sediments contain up to 350 mg/kg or 650 particles/kg of microplastic (dry weight). The unique hydrologic conditions of the river branching area contribute to the formation of a microplastic pollution hotspot. The hotspot accumulates >30 % of microplastic pollution, mainly ABS plastic particles smaller than 0.3 mm with roughness and cracks, which increases the hazard class (from II to IV) of microplastic pollution. Obtained data and high annual variability of pollution indicates that this area acts as a place of accumulation, degradation and gradual release of microplastics into the White and Barents Seas, i.e. into the Arctic region.
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