guide design

  • 文章类型: Journal Article
    在人口老龄化的背景下,作为个人基本福祉的重要组成部分,和平临终关怀的概念越来越重要。这强调了研究和开发致力于提供宁静休息环境的临终关怀设施和服务系统的重要性。这项研究的重点是选定的临终关怀护理建筑,检查他们的服务模式演变和建筑设计。通过案例分析,它探索了当代的临终关怀建筑,识别各种类型和空间设计特征,以满足个人的最终需求。研究结果指导了中国临终关怀建筑的设计,强调病人的生活区,医疗保健区,和辅助功能空间。这种全面的方法旨在提高绝症患者的舒适度,宁静,和尊严。此外,它旨在为绝症患者的家庭提供情感和葬礼后的支持。
    In the context of an aging population, the concept of peaceful end-of-life care has gained increasing significance as an essential component of individuals\' fundamental well-being. This underscores the importance of researching and developing hospice care facilities and service systems dedicated to providing a tranquil resting environment. This study focuses on selected hospice care buildings, examining their service model evolution and architectural design. Through case analyses, it explores contemporary hospice care architecture, identifying various types and spatial design features that cater to the end-of-life needs of individuals. The findings guide the design of hospice care buildings in China, emphasizing patient-living areas, medical care zones, and auxiliary functional spaces. This comprehensive approach aims to enhance terminally ill patients\' comfort, serenity, and dignity. Moreover, it aims to provide emotional and post-funeral support to terminally ill patients\' families.
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  • 文章类型: Journal Article
    OBJECTIVE: Explore an accurate transosseous tunnel drilling method based on three-dimensional (3D) printing technology for acromioclavicular joint reconstruction (ACD), design a guide design, and evaluate its accuracy.
    METHODS: Using Mimics software to reconstruct 100 cases of acromioclavicular joint computed tomography (CT) data. In design 2, the non-collinear tunnel is superimposed on the 3D model, and a virtual drilling is performed between the clavicle and the coracoid using a triple inner gusset. Then, in the Geomagic Studio software model, an elliptical plane is calculated and extracted as a guide design for precise drilling. Then put the design and the 3D shoulder model together for 3D printing. Ten lengths were measured, and the effects of the virtual model, the actual model, and the guide rail design were compared.
    RESULTS: We successfully compared 10 parameters of 3D virtual model and actual model. There was no significant difference between actual and virtual bone tunnels in 10 measurements (P > 0.05).
    CONCLUSIONS: The accuracy of ACD combined with 3D printing guidance design technology in the transosseous tunnel of adult shoulder is reliable.
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  • 文章类型: Journal Article
    用于CRISPR系统的最佳指导RNA(gRNA)序列的设计受到需要在期望的位置实现高效编辑(中靶编辑)而在非预期位置实现最小编辑(脱靶编辑)的挑战。尽管理想情况下实验室验证应用于检测脱靶活动,由于计算预测的速度和低成本,在实践中几乎总是首选。因此,一些研究探索了gRNA-DNA相互作用,以了解CRISPR复合物如何选择其基因组靶标。CHOPCHOP(https://chopchop.cbu.uib.no/)利用这些开发来构建用户友好的Web界面,帮助用户设计最佳的gRNA。CHOPCHOP支持广泛的CRISPR应用,包括基因敲除,序列敲入,和RNA敲除。此外,CHOPCHOP提供可视化,使gRNA的明智选择和支持实验验证。在这些协议中,我们描述了使用CHOPCHOP设计gRNA的最佳实践。©2021作者WileyPeriodicalsLLC出版的当前协议。基本方案1:用于基因敲除的gRNA的设计替代方案1:用于dCas9融合/效应子靶向的gRNA的设计支持方案:用于靶向转基因或质粒序列的gRNA的设计基本方案2:用于RNA靶向的gRNA的设计基本方案3:用于序列敲入的gRNA的设计替代方案2:使用非同源末端连接设计用于敲入的gRNA的设计
    The design of optimal guide RNA (gRNA) sequences for CRISPR systems is challenged by the need to achieve highly efficient editing at the desired location (on-target editing) with minimal editing at unintended locations (off-target editing). Although laboratory validation should ideally be used to detect off-target activity, computational predictions are almost always preferred in practice due to their speed and low cost. Several studies have therefore explored gRNA-DNA interactions in order to understand how CRISPR complexes select their genomic targets. CHOPCHOP (https://chopchop.cbu.uib.no/) leverages these developments to build a user-friendly web interface that helps users design optimal gRNAs. CHOPCHOP supports a wide range of CRISPR applications, including gene knock-out, sequence knock-in, and RNA knock-down. Furthermore, CHOPCHOP offers visualization that enables an informed choice of gRNAs and supports experimental validation. In these protocols, we describe the best practices for gRNA design using CHOPCHOP. © 2021 The Authors. Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Design of gRNAs for gene knock-out Alternate Protocol 1: Design of gRNAs for dCas9 fusion/effector targeting Support Protocol: Design of gRNAs for targeting transgenic or plasmid sequences Basic Protocol 2: Design of gRNAs for RNA targeting Basic Protocol 3: Design of gRNAs for sequence knock-in Alternate Protocol 2: Design of gRNAs for knock-in using non-homologous end joining Basic Protocol 4: Design of gRNAs for knock-in using Cas9 nickases.
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  • 文章类型: Journal Article
    BACKGROUND: CRISPR-based systems are playing an important role in modern genome engineering. A large number of computational methods have been developed to assist in the identification of suitable guides. However, there is only limited overlap between the guides that each tool identifies. This can motivate further development, but also raises the question of whether it is possible to combine existing tools to improve guide design.
    RESULTS: We considered nine leading guide design tools, and their output when tested using two sets of guides for which experimental validation data is available. We found that consensus approaches were able to outperform individual tools. The best performance (with a precision of up to 0.912) was obtained when combining four of the tools and accepting all guides selected by at least three of them.
    CONCLUSIONS: These results can be used to improve CRISPR-based studies, but also to guide further tool development. However, they only provide a short-term solution as the time and computational resources required to run four tools may be impractical in certain applications.
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