generative adversarial networks

生成对抗网络
  • 文章类型: Journal Article
    这项研究解决了利用医疗数据时与隐私问题相关的挑战,尤其是个人信息的保护。为了克服这个障碍,该研究的重点是使用真实世界的时间序列生成对抗网络(RTSGAN)进行数据合成。使用15799例结直肠癌患者的数据集合成了总共53,005个数据。合成数据质量的定量评估结果如下:Hellinger距离范围从0到0.25;合成列车,真实测试(TSTR)和真实训练,合成测试(TRTS)结果显示曲线下平均面积为0.99和0.98;倾向均方误差为0.223。在包括t-SNE和直方图分析的定性方法中,合成数据和真实数据是相似的。综合数据在预测结直肠癌患者五年生存率中的应用证明了与基于真实数据的模型相当的性能。这项研究采用了距离最近的记录和成员推断测试来评估潜在的隐私暴露,揭示最小的风险。这项研究表明,综合医疗数据是可行的,包括时间序列数据,使用RTSGAN,可以通过定量和定性方法以及利用现实世界的人工智能模型来评估合成数据以准确反映真实数据的特征。
    This study addresses challenges related to privacy issues in utilizing medical data, particularly the protection of personal information. To overcome this obstacle, the research focuses on data synthesis using real-world time-series generative adversarial networks (RTSGAN). A total of 53,005 data were synthesized using the dataset of 15,799 patients with colorectal cancer. The results of the quantitative evaluation of the synthetic data\'s quality are as follows: the Hellinger distance ranged from 0 to 0.25; the train on synthetic, test on real (TSTR) and train on real, test on synthetic (TRTS) results showed an average area under the curve of 0.99 and 0.98; a propensity mean squared error was 0.223. The synthetic and real data were similar in the qualitative methods including t-SNE and histogram analyses. The application of synthetic data in predicting five-year survival in colorectal cancer patients demonstrates comparable performance to models based on real data. This study employs distance to closest records and membership inference test to assess potential privacy exposure, revealing minimal risk. This study demonstrated that it is feasible to synthesize medical data, including time-series data, using the RTSGAN, and the synthetic data can be evaluated to accurately reflect the characteristics of real data through quantitative and qualitative methods as well as by utilizing real-world artificial intelligence models.
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  • 文章类型: Journal Article
    人类多能干细胞(hPSC)衍生的心脏类器官是最新的三维组织结构,可模拟人类心脏的结构和功能,并在模拟心脏发育和疾病中起关键作用。hPSC衍生的心脏类器官通常通过亮场显微成像来表征,以跟踪每日的类器官分化和形态形成。尽管明场显微镜提供了有关hPSC衍生的心脏类器官的基本信息,如形态学,尺寸,和一般结构,它并不能扩展我们对心脏类器官细胞类型特异性分布和结构的理解。然后,需要荧光显微镜成像通过荧光免疫染色固定的类器官样品或活的类器官的荧光报告成像来鉴定hPSC衍生的心脏类器官中的特定心血管细胞类型。两种方法都需要额外的实验和技术步骤,并且不提供来自不同批次的分化和表征的hPSC衍生的心脏类器官的一般信息。这限制了hPSC衍生的心脏类器官的生物医学应用。这项研究通过提出一个全面的工作流程来解决这一限制,该工作流程用于使用条件生成对抗网络(GAN)从明场显微成像对心脏器官的相位对比图像进行着色,以在hPSC衍生的心脏器官中提供心血管细胞类型特异性信息。通过将这些相衬图像注入精确的荧光着色,我们的方法旨在解锁细胞类型的隐藏财富,结构,并进一步量化荧光强度和面积,为了更好地表征hPSC衍生的心脏类器官。
    Human pluripotent stem cell (hPSC)-derived cardiac organoid is the most recent three-dimensional tissue structure that mimics the structure and functionality of the human heart and plays a pivotal role in modeling heart development and disease. The hPSC-derived cardiac organoids are commonly characterized by bright-field microscopic imaging for tracking daily organoid differentiation and morphology formation. Although the brightfield microscope provides essential information about hPSC-derived cardiac organoids, such as morphology, size, and general structure, it does not extend our understanding of cardiac organoids on cell type-specific distribution and structure. Then, fluorescence microscopic imaging is required to identify the specific cardiovascular cell types in the hPSC-derived cardiac organoids by fluorescence immunostaining fixed organoid samples or fluorescence reporter imaging of live organoids. Both approaches require extra steps of experiments and techniques and do not provide general information on hPSC-derived cardiac organoids from different batches of differentiation and characterization, which limits the biomedical applications of hPSC-derived cardiac organoids. This research addresses this limitation by proposing a comprehensive workflow for colorizing phase contrast images of cardiac organoids from brightfield microscopic imaging using conditional Generative Adversarial Networks (GANs) to provide cardiovascular cell type-specific information in hPSC-derived cardiac organoids. By infusing these phase contrast images with accurate fluorescence colorization, our approach aims to unlock the hidden wealth of cell type, structure, and further quantifications of fluorescence intensity and area, for better characterizing hPSC-derived cardiac organoids.
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  • 文章类型: Journal Article
    随着互联网应用的普及,会产生大量的互联网行为日志数据。企业员工的异常行为可能导致互联网安全问题和数据泄露事件。为了确保信息系统的安全,网络行为的异常预测研究具有重要意义。由于手动标记大数据的成本很高,一种无监督生成模型-基于生成对抗网络(APIBGAN)的互联网行为异常预测,它仅适用于少量标记数据,提出了对互联网行为异常进行预测的方法。在通过所提出的方法对输入的互联网行为数据进行预处理之后,APIBGAN中的数据生成生成对抗网络(DGGAN)通过利用神经网络从数据中提取强大的特征来生成具有随机噪声的互联网行为数据,从而学习真实互联网行为数据的分布。APIBGAN利用这些标记的生成数据作为基准来完成基于距离的异常预测。采用来自公司员工的三类Internet行为采样数据来培训APIBGAN:(1)部门中个人的在线行为数据。(2)同一部门多名员工的在线行为数据。(3)不同部门多名员工的在线行为数据。三类互联网行为数据的预测得分均为87.23%,85.13%,和83.47%,分别,在CCF大数据和计算情报竞赛(CCF-BDCI)中,通过基于隔离森林的比较方法获得的最高分81.35%以上。实验结果验证了APIBGAN通过GAN可以有效地预测网络行为的异常值,它由一个简单的三层全连接神经网络(FNN)组成。我们不仅可以将APIBGAN用于互联网行为的异常预测,还可以用于许多其他应用中的异常预测,这些大数据无法手动标记。最重要的是,APIBGAN在异常预测中具有广阔的应用前景,我们的工作还为基于异常预测的GAN提供了有价值的输入。
    With the popularity of Internet applications, a large amount of Internet behavior log data is generated. Abnormal behaviors of corporate employees may lead to internet security issues and data leakage incidents. To ensure the safety of information systems, it is important to research on anomaly prediction of Internet behaviors. Due to the high cost of labeling big data manually, an unsupervised generative model-Anomaly Prediction of Internet behavior based on Generative Adversarial Networks (APIBGAN), which works only with a small amount of labeled data, is proposed to predict anomalies of Internet behaviors. After the input Internet behavior data is preprocessed by the proposed method, the data-generating generative adversarial network (DGGAN) in APIBGAN learns the distribution of real Internet behavior data by leveraging neural networks\' powerful feature extraction from the data to generate Internet behavior data with random noise. The APIBGAN utilizes these labeled generated data as a benchmark to complete the distance-based anomaly prediction. Three categories of Internet behavior sampling data from corporate employees are employed to train APIBGAN: (1) Online behavior data of an individual in a department. (2) Online behavior data of multiple employees in the same department. (3) Online behavior data of multiple employees in different departments. The prediction scores of the three categories of Internet behavior data are 87.23%, 85.13%, and 83.47%, respectively, and are above the highest score of 81.35% which is obtained by the comparison method based on Isolation Forests in the CCF Big Data & Computing Intelligence Contest (CCF-BDCI). The experimental results validate that APIBGAN predicts the outlier of Internet behaviors effectively through the GAN, which is composed of a simple three-layer fully connected neural networks (FNNs). We can use APIBGAN not only for anomaly prediction of Internet behaviors but also for anomaly prediction in many other applications, which have big data infeasible to label manually. Above all, APIBGAN has broad application prospects for anomaly prediction, and our work also provides valuable input for anomaly prediction-based GAN.
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  • 文章类型: Journal Article
    为了分析深度学习模型对检测拒绝服务(DoS)攻击的影响,本文首先研究了DoS攻击的概念和攻击策略,然后研究了当前的DoS攻击检测方法。针对调查的局限性,建立了基于深度学习的分布式DoS攻击检测系统。该系统可以快速准确地识别网络中需要检测的分布式DoS攻击流量,然后及时向系统发送告警信号。然后,针对DoS攻击中网络流量不完整的特点,提出了一种称为带逆变器的改进条件Wasserstein生成对抗网络(ICWGANInverter)的模型。该模型自动学习原始数据的高级抽象信息,然后采用重建误差的方法来识别最佳分类标签。然后在入侵检测数据集NSL-KDD上进行测试。研究结果表明,子数据集KDDTest和KDDTest-21中连续特征重建的均方误差随着噪声因子的增加而稳步增加。所有的接收器工作特性(ROC)曲线显示在对角线的顶部,且宏观平均值和微观平均值的总体ROC曲线下面积(AUC)值均在0.8以上,说明ICWGANInverter模型在单类别攻击检测和整体攻击检测中均具有优异的检测性能。该模型比其他模型具有更高的检测精度,达到87.79%。这表明本文建议的方法为检测DoS攻击提供了更高的优势。
    In order to analyze the influence of deep learning model on detecting denial-of-service (DoS) attacks, this article first examines the concepts and attack strategies of DoS assaults before looking into the present detection methodologies for DoS attacks. A distributed DoS attack detection system based on deep learning is established in response to the investigation\'s limitations. This system can quickly and accurately identify the traffic of distributed DoS attacks in the network that needs to be detected and then promptly send an alarm signal to the system. Then, a model called the Improved Conditional Wasserstein Generative Adversarial Network with Inverter (ICWGANInverter) is proposed in response to the characteristics of incomplete network traffic in DoS attacks. This model automatically learns the advanced abstract information of the original data and then employs the method of reconstruction error to identify the best classification label. It is then tested on the intrusion detection dataset NSL-KDD. The findings demonstrate that the mean square error of continuous feature reconstruction in the sub-datasets KDDTest+ and KDDTest-21 steadily increases as the noise factor increases. All of the receiver operating characteristic (ROC) curves are shown at the top of the diagonal, and the overall area under the ROC curve (AUC) values of the macro-average and micro-average are above 0.8, which demonstrates that the ICWGANInverter model has excellent detection performance in both single category attack detection and overall attack detection. This model has a greater detection accuracy than other models, reaching 87.79%. This demonstrates that the approach suggested in this article offers higher benefits for detecting DoS attacks.
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  • 文章类型: Journal Article
    车牌信息是个人隐私的重要组成部分,受法律保护。然而,在一些公开的交通数据集中,图像中的LP区域尚未被处理。其他数据集已经应用了简单的去识别操作,例如模糊和掩蔽。这种粗制滥造的操作将导致数据效用的降低。在本文中,我们提出了一种基于生成对抗网络(LPDiGAN)的LP去识别方法,以将原始图像转换为具有生成的LP的合成图像。为了保持原始的LP属性,从背景中提取背景特征以生成与原件相似的LP。LP模板和LP样式也被馈送到网络中,以获得具有可控特征和更高质量的合成LP。结果表明,LPDiGAN可以感知环境条件和LP倾斜角的变化,并通过LP模板控制LP字符。感知相似性度量,感知图像片相似度(LPIPS)达到0.25,同时确保字符识别对去识别图像的效果,证明LPDiGAN可以实现出色的去识别,同时保持强大的数据效用。
    License plate (LP) information is an important part of personal privacy, which is protected by law. However, in some publicly available transportation datasets, the LP areas in the images have not been processed. Other datasets have applied simple de-identification operations such as blurring and masking. Such crude operations will lead to a reduction in data utility. In this paper, we propose a method of LP de-identification based on a generative adversarial network (LPDi GAN) to transform an original image to a synthetic one with a generated LP. To maintain the original LP attributes, the background features are extracted from the background to generate LPs that are similar to the originals. The LP template and LP style are also fed into the network to obtain synthetic LPs with controllable characters and higher quality. The results show that LPDi GAN can perceive changes in environmental conditions and LP tilt angles, and control the LP characters through the LP templates. The perceptual similarity metric, Learned Perceptual Image Patch Similarity (LPIPS), reaches 0.25 while ensuring the effect of character recognition on de-identified images, demonstrating that LPDi GAN can achieve outstanding de-identification while preserving strong data utility.
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  • 文章类型: Journal Article
    在低光照环境中,相机传感器捕获的光量减少,导致较低的图像亮度。这使得很难识别或完全丢失图像中的细节,这影响了弱光图像的后续处理。弱光图像增强方法可以提高图像亮度,同时更好地恢复颜色和细节信息。提出了一种用于低质量图像增强的生成对抗网络,以提高弱光图像的质量。该网络由生成网络和对抗网络组成。在生成网络中,多尺度特征提取模块,它由扩张的卷积组成,正则卷积,最大池化,和平均池化,是设计的。该模块可以从多个尺度提取弱光图像特征,从而获得更丰富的特征信息。其次,照明注意模块旨在减少冗余功能的干扰。该模块赋予重要的照明功能更大的权重,使网络能够更有效地提取光照特征。最后,设计了编码器-解码器生成网络。它使用多尺度特征提取模块,照明注意模块,和其他常规模块,以增强弱光图像并提高质量。关于对抗网络,设计了双鉴别器结构。该网络具有全球对抗网络和本地对抗网络。它们确定输入图像是实际的还是从全局和局部特征生成的,提高发电机网络的性能。此外,通过在常规损失函数中引入颜色损失和感知损失,提出了一种改进的损失函数。它可以更好地测量生成的图像和正常照明的图像之间的颜色损失,从而减少增强过程中的色彩失真。所提出的方法,以及其他方法,使用合成和真实的低光图像进行测试。实验结果表明,与其他方法相比,通过所提出的方法增强的图像更接近于合成弱光图像的正常照明图像。对于真实的低光图像,所提出的方法增强的图像保留了更多的细节,更明显,并表现出更高的性能指标。总的来说,与其他方法相比,所提出的方法对合成和真实的弱光图像都具有更好的图像增强能力。
    In low-light environments, the amount of light captured by the camera sensor is reduced, resulting in lower image brightness. This makes it difficult to recognize or completely lose details in the image, which affects subsequent processing of low-light images. Low-light image enhancement methods can increase image brightness while better-restoring color and detail information. A generative adversarial network is proposed for low-quality image enhancement to improve the quality of low-light images. This network consists of a generative network and an adversarial network. In the generative network, a multi-scale feature extraction module, which consists of dilated convolutions, regular convolutions, max pooling, and average pooling, is designed. This module can extract low-light image features from multiple scales, thereby obtaining richer feature information. Secondly, an illumination attention module is designed to reduce the interference of redundant features. This module assigns greater weight to important illumination features, enabling the network to extract illumination features more effectively. Finally, an encoder-decoder generative network is designed. It uses the multi-scale feature extraction module, illumination attention module, and other conventional modules to enhance low-light images and improve quality. Regarding the adversarial network, a dual-discriminator structure is designed. This network has a global adversarial network and a local adversarial network. They determine if the input image is actual or generated from global and local features, enhancing the performance of the generator network. Additionally, an improved loss function is proposed by introducing color loss and perceptual loss into the conventional loss function. It can better measure the color loss between the generated image and a normally illuminated image, thus reducing color distortion during the enhancement process. The proposed method, along with other methods, is tested using both synthesized and real low-light images. Experimental results show that, compared to other methods, the images enhanced by the proposed method are closer to normally illuminated images for synthetic low-light images. For real low-light images, the images enhanced by the proposed method retain more details, are more apparent, and exhibit higher performance metrics. Overall, compared to other methods, the proposed method demonstrates better image enhancement capabilities for both synthetic and real low-light images.
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  • 文章类型: Journal Article
    目的:使用人工智能从飞行时间磁共振血管造影(TOF-MRA)图像中生成灌注参数图,以提供传统灌注成像技术的替代方案。
    方法:这项回顾性研究共纳入272例脑血管疾病患者;200例急性卒中患者(2010-2018年),和72例狭窄闭塞性疾病(2011-2014年)。对于每个患者,从数据集中检索TOFMRA图像和相应的动态磁化率对比磁共振成像(DSC-MRI)。作者提出了一种适应性的生成对抗网络(GAN)架构,3Dpix2pixGAN,生成常见灌注图(CBF,CBV,MTT,TTP,Tmax)来自TOF-MRA图像。通过结构相似性指数度量(SSIM)评估性能。对于急性中风数据集中的20名患者的子集,计算Dice系数以测量产生的和真实的灌注不足病变之间的重叠,最大时间(Tmax)>6s.
    结果:GAN模型在两个数据集中的所有灌注图都表现出高度的视觉重叠和表现:急性卒中(平均SSIM0.88-0.92,平均PSNR28.48-30.89,平均MAE0.02-0.04和平均NRMSE0.14-0.37)和狭窄闭塞性疾病患者(平均SSIM0.83-0.98,平均PSNR23.62-38.21和0.15,平均对于Tmax>6s的病变的重叠分析,Dice系数中位数为0.49.
    结论:我们的AI模型可以从TOF-MRA图像成功生成灌注参数图,为评估脑血管疾病患者脑血流动力学的非侵入性替代方法铺平了道路。这种方法可能会影响脑血管疾病患者的分层。我们的结果保证了对该方法的更广泛的改进和验证。
    OBJECTIVE: To generate perfusion parameter maps from Time-of-flight magnetic resonance angiography (TOF-MRA) images using artificial intelligence to provide an alternative to traditional perfusion imaging techniques.
    METHODS: This retrospective study included a total of 272 patients with cerebrovascular diseases; 200 with acute stroke (from 2010 to 2018), and 72 with steno-occlusive disease (from 2011 to 2014). For each patient the TOF MRA image and the corresponding Dynamic susceptibility contrast magnetic resonance imaging (DSC-MRI) were retrieved from the datasets. The authors propose an adapted generative adversarial network (GAN) architecture, 3D pix2pix GAN, that generates common perfusion maps (CBF, CBV, MTT, TTP, Tmax) from TOF-MRA images. The performance was evaluated by the structural similarity index measure (SSIM). For a subset of 20 patients from the acute stroke dataset, the Dice coefficient was calculated to measure the overlap between the generated and real hypoperfused lesions with a time-to-maximum (Tmax) > 6 s.
    RESULTS: The GAN model exhibited high visual overlap and performance for all perfusion maps in both datasets: acute stroke (mean SSIM 0.88-0.92, mean PSNR 28.48-30.89, mean MAE 0.02-0.04 and mean NRMSE 0.14-0.37) and steno-occlusive disease patients (mean SSIM 0.83-0.98, mean PSNR 23.62-38.21, mean MAE 0.01-0.05 and mean NRMSE 0.03-0.15). For the overlap analysis for lesions with Tmax>6 s, the median Dice coefficient was 0.49.
    CONCLUSIONS: Our AI model can successfully generate perfusion parameter maps from TOF-MRA images, paving the way for a non-invasive alternative for assessing cerebral hemodynamics in cerebrovascular disease patients. This method could impact the stratification of patients with cerebrovascular diseases. Our results warrant more extensive refinement and validation of the method.
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  • 文章类型: Journal Article
    基础设施行业消耗自然资源,产生建筑垃圾,对环境有不利影响。为了减轻这些不利影响并减少原材料消耗,废料可以重新利用,以实现可持续性。然而,再生材料会恶化混凝土的固有性能。合适比例的自然资源和再生骨料可以产生所需的抗压强度。在土木工程实验室中编译足够的数据以得出可靠的结论是耗时且昂贵的。因此,这项研究提出了一种利用有限数据预测抗压强度的新方法。使用生成对抗网络来生成合成数据。混合训练,利用常规损失或启发式损失,通过自适应调整正则项来防止模型过拟合。来自多元正态分布的随机噪声被启发式地嵌入到训练样本中以捕获复杂的数据变化。敏感性分析表明,再生粗骨料和水的大小是最显著的特征,与它们的相关性保持一致。有趣的是,高效减水剂,再生粗骨料密度,尽管相关性较低,但再生粗骨料的吸水率对预测的贡献显着。提出的方法优于随机森林,支持向量回归,人工神经网络,并通过对均方误差为7.97,均方根误差为2.82,平均绝对误差为2.13,确定系数为0.96进行自适应提升。这些结果表明,所提出的技术可以通过准确预测抗压强度来有效地促进可持续建筑实践。
    The infrastructure industry consumes natural resources and produces construction waste, which has a detrimental impact on the environment. To mitigate these adverse effects and reduce raw material consumption, waste materials can be repurposed to achieve sustainability. However, recycled materials deteriorate the intrinsic properties of concrete. A suitable ratio of natural resources and recycled aggregates can produce the desired compressive strength. Compiling sufficient data in civil engineering laboratories to make reliable conclusions is time-consuming and costly. Therefore, this research proposes a novel approach for predicting compressive strengths using limited data. The generative adversarial network was employed to generate synthetic data. Hybrid training, utilizing either conventional loss or heuristic loss, prevents the model from overfitting by adaptively adjusting the regularization term. Random noise from a multivariate normal distribution is embedded heuristically into the training samples to capture intricate data variations. Sensitivity analysis indicated that the size of recycled coarse aggregate and water are the most significant features, aligning with their correlations. Interestingly, superplasticizer, density of recycled coarse aggregate, and water absorption ratio of recycled coarse aggregate contributed significantly to predictions despite their low correlations. The propounded method outperforms random forest, support vector regression, artificial neural network, and adaptive boosting by scoring a mean squared error of 7.97, a root mean squared error of 2.82, a mean absolute error of 2.13, and a coefficient of determination of 0.96. These results suggest that the proposed technique can effectively contribute to sustainable construction practices by accurately predicting compressive strengths.
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  • 文章类型: Journal Article
    背景:血脑屏障(BBB)充当关键的结构屏障,并阻碍大多数神经治疗药物进入大脑。这对中枢神经系统(CNS)药物开发提出了重大挑战。因为缺乏有效的药物递送技术来克服这一障碍。BBB穿透肽(BBBP)有望克服BBB并促进药物分子向大脑的递送。因此,准确鉴定BBBP已成为CNS药物开发的关键步骤。然而,大多数计算方法是基于常规模型设计的,这些模型不足以捕获BBBP与BBB之间的复杂相互作用。此外,这些方法的性能进一步受到不平衡数据集的阻碍。
    目的:本研究解决了BBBP预测中数据集不平衡的问题,并提出了有效准确识别BBBP的强大预测器,以及产生类似的BBBP。
    方法:基于变压器的深度学习模型,DeepB3P,提出了预测BBBP的方法。反馈生成对抗网络(FBGAN)模型被用来有效地生成类似的BBBP,解决数据不平衡问题。
    结果:FBGAN模型具有生成新型BBBP样肽的能力,有效缓解BBBP预测中的数据失衡问题。在基准数据集上进行的大量实验表明,DeepB3P优于其他BBBP预测模型约9.09%,特异性4.55%和9.41%,准确度,和马修的相关系数,分别。为了加快BBBP鉴定和CNS药物设计的进展,拟议的DeepB3P被实现为一个网络服务器,可以在http://cbcb访问。CDutcm.edu.cn/deepb3p/.
    结论:DeepB3P提供的可解释分析提供了有价值的见解,并增强了BBBP识别的下游分析。此外,由FBGAN产生的BBBP样肽具有作为CNS药物开发候选物的潜力.
    BACKGROUND: The blood-brain barrier (BBB) serves as a critical structural barrier and impedes the entry of most neurotherapeutic drugs into the brain. This poses substantial challenges for central nervous system (CNS) drug development, as there is a lack of efficient drug delivery technologies to overcome this obstacle. BBB penetrating peptides (BBBPs) hold promise in overcoming the BBB and facilitating the delivery of drug molecules to the brain. Therefore, precise identification of BBBPs has become a crucial step in CNS drug development. However, most computational methods are designed based on conventional models that inadequately capture the intricate interaction between BBBPs and the BBB. Moreover, the performance of these methods was further hampered by unbalanced datasets.
    OBJECTIVE: This study addresses the problem of unbalanced datasets in BBBP prediction and proposes a powerful predictor for efficiently and accurately identifying BBBPs, as well as generating analogous BBBPs.
    METHODS: A transformer-based deep learning model, DeepB3P, was proposed for predicting BBBP. The feedback generative adversarial network (FBGAN) model was employed to effectively generate analogous BBBPs, addressing data imbalance.
    RESULTS: The FBGAN model possesses the ability to generate novel BBBP-like peptides, effectively mitigating the data imbalance in BBBP prediction. Extensive experiments on benchmarking datasets demonstrated that DeepB3P outperforms other BBBP prediction models by approximately 9.09%, 4.55% and 9.41% in terms of specificity, accuracy, and Matthew\'s correlation coefficient, respectively. For accelerating the progress in BBBP identification and CNS drug design, the proposed DeepB3P was implemented as a webserver, which is accessible at http://cbcb.cdutcm.edu.cn/deepb3p/.
    CONCLUSIONS: The interpretable analyses provided by DeepB3P offer valuable insights and enhance downstream analyses for BBBP identification. Moreover, the BBBP-like peptides generated by FBGAN hold potential as candidates for CNS drug development.
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  • 文章类型: Journal Article
    随着数字病理学的发展,深度学习越来越多地应用于子宫内膜细胞形态学分析以进行癌症筛查。并且具有不同染色的细胞学图像可能降低这些分析算法的性能。为了解决染色模式的影响,已经提出了许多策略,并且苏木精和伊红(H&E)图像已被转移到其他染色样式。然而,现有的方法都不能生成具有保留的细胞布局的真实细胞学图像,许多重要的临床结构信息丢失。为了解决上述问题,我们提出了一种不同的染色转化模型,CytoGAN,它可以快速,逼真地生成具有不同染色样式的图像。它包括一个新颖的结构保存模块,可以很好地保存细胞结构,即使源和目标域之间的分辨率或单元格大小不匹配。同时,染色自适应模块被设计来帮助模型生成真实和高质量的子宫内膜细胞学图像。我们将我们的模型与十种最先进的染色转化模型进行了比较,并由两名病理学家进行了评估。此外,在下游子宫内膜癌分类任务中,我们的算法提高了分类模型在多模态数据集上的鲁棒性,精度提高20%以上。我们发现,从现有的H&E图像生成特定的特定染色改善了子宫内膜癌的诊断。我们的代码将在github上可用。
    With the development of digital pathology, deep learning is increasingly being applied to endometrial cell morphology analysis for cancer screening. And cytology images with different staining may degrade the performance of these analysis algorithms. To address the impact of staining patterns, many strategies have been proposed and hematoxylin and eosin (H&E) images have been transferred to other staining styles. However, none of the existing methods are able to generate realistic cytological images with preserved cellular layout, and many important clinical structural information is lost. To address the above issues, we propose a different staining transformation model, CytoGAN, which can quickly and realistically generate images with different staining styles. It includes a novel structure preservation module that preserves the cell structure well, even if the resolution or cell size between the source and target domains do not match. Meanwhile, a stain adaptive module is designed to help the model generate realistic and high-quality endometrial cytology images. We compared our model with ten state-of-the-art stain transformation models and evaluated by two pathologists. Furthermore, in the downstream endometrial cancer classification task, our algorithm improves the robustness of the classification model on multimodal datasets, with more than 20 % improvement in accuracy. We found that generating specified specific stains from existing H&E images improves the diagnosis of endometrial cancer. Our code will be available on github.
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