gastroenteritis outbreak

  • 文章类型: Journal Article
    背景:饮用水污染后的水传播疾病暴发(WGDO)仍然是公共卫生问题。
    方法:本研究旨在评估希腊WGDO的通知和调查中的发生情况并确定差距。检索并总结了2004-2023年的数据。
    结果:确定了35次暴发,记录了6128例病例。从第一批病例的发病日期到报告的中位时间为7天(范围:1-26天)。当局在30起(85.7%)疫情中得到了医疗保健服务的通知,在5起(14.3%)病例中得到了媒体的通知。使用的调查方法多种多样。对9次(25.7%)疫情进行了分析研究,对27次(77.1%)的临床样本进行了检测。在三次(11.1%)疫情中,临床样本同时检测多种细菌,病毒,和寄生虫。在19次(54.3%)暴发(氯化后3次)中收集了水样,平均时滞为5天(范围:1-20天)。在20例(57.1%)疫情中发现了临床样本中的病原体,在1(6.25%)中,在临床和水样中均分离出相同的微生物。
    结论:报告的延迟和调查的异质性表明,应加强对WGDO和应对措施的监测,和操作程序应该标准化。
    BACKGROUND: waterborne disease outbreaks (WGDOs) following the contamination of drinking water remain a public health concern.
    METHODS: The current study aims to assess the occurrence and identify gaps in the notification and investigation of WGDOs in Greece. Data for 2004-2023 were retrieved and summarized.
    RESULTS: Thirty-five outbreaks with 6128 recorded cases were identified. The median time from the date of onset in the first cases to reporting was 7 days (range: 1-26 days). Authorities were informed by health care services in thirty (85.7%) outbreaks and by the media in five (14.3%). The investigation methods used varied. An analytical study was conducted in nine (25.7%) outbreaks and the testing of clinical samples in twenty-seven (77.1%). In three (11.1%) outbreaks, clinical samples were simultaneously tested for multiple bacteria, viruses, and parasites. Water samples were collected in nineteen (54.3%) outbreaks (in three after chlorination) with a mean time lag of 5 days (range: 1-20 days) from the first cases. A pathogen in clinical samples was identified in 20 (57.1%) outbreaks and, in 1 (6.25%), the same microorganism was isolated in both clinical and water samples.
    CONCLUSIONS: delays in reporting and the heterogeneity of investigations depict that the surveillance of WGDOs and response practices should be strengthened, and operational procedures should be standardised.
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  • 文章类型: Journal Article
    霍乱弧菌是一种人类病原体,通过食用受污染的食物或水传播。V.属于O1和O139血清群的霍乱弧菌菌株可引起霍乱爆发和流行,严重的危及生命的腹泻病.相比之下,O1和O139以外的血清群,称为非O1/非O139,主要与中度或轻度腹泻的散发性病例有关,菌血症和伤口感染。在这里,我们调查了在圣地亚哥引起肠胃炎爆发的非O1/非O139霍乱弧菌菌株的毒力决定因素和系统发育起源,智利,2018.我们发现这种爆发菌株缺乏O1和O139菌株所拥有的经典毒力基因,包括霍乱毒素(CT)和毒素共调节菌毛(TCP)。然而,该菌株携带编码III型和VI型分泌系统(T3SS/T6SS)的基因组岛(GI)和抗生素抗性基因。此外,我们发现这些GI广泛分布在非O1/非O139菌株的几个谱系中。我们的结果表明,获得这些GI可能会增强缺乏CT和TCP编码基因的非O1/非O139菌株的毒力。我们的结果强调了这些霍乱弧菌菌株的致病潜力。
    Vibrio cholerae is a human pathogen, which is transmitted by the consumption of contaminated food or water. V. cholerae strains belonging to the serogroups O1 and O139 can cause cholera outbreaks and epidemics, a severe life-threatening diarrheal disease. In contrast, serogroups other than O1 and O139, denominated as non-O1/non-O139, have been mainly associated with sporadic cases of moderate or mild diarrhea, bacteremia and wound infections. Here we investigated the virulence determinants and phylogenetic origin of a non-O1/non-O139 V. cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018. We found that this outbreak strain lacks the classical virulence genes harboured by O1 and O139 strains, including the cholera toxin (CT) and the toxin-coregulated pilus (TCP). However, this strain carries genomic islands (GIs) encoding Type III and Type VI secretion systems (T3SS/T6SS) and antibiotic resistance genes. Moreover, we found these GIs are wide distributed among several lineages of non-O1/non-O139 strains. Our results suggest that the acquisition of these GIs may enhance the virulence of non-O1/non-O139 strains that lack the CT and TCP-encoding genes. Our results highlight the pathogenic potential of these V. cholerae strains.
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  • 文章类型: Case Reports
    Three severe acute gastroenteritis patients were identified within a 5-h period in a sentinel hospital enrolled in the foodborne pathogen surveillance project in Beijing. All patients had high fever (over 38.5°C), diarrhea, abdominal pain, vomiting, and headache. Ten grams of fresh patient stool sample and 25 g of six suspected foods were collected for real-time PCR screening for 10 major pathogens. Bacterial isolation was performed. Pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), and antibiotic susceptibility tests were conducted for all the isolates. Whole-genome sequences of the three Campylobacter coli isolates were compared using whole-genome MLST. All stool samples were positive for C. coli, as revealed by PCR. Eleven of the C. coli isolates had the same PFGE and ST type. All isolates were resistant to nalidixic acid, ciprofloxacin, streptomycin, and tetracycline, consistent with the findings of the in silico antibiotic resistance gene profiling. Most coding sequences (99%, 1736/1739) were identical among the three sequenced isolates, except for three frameshift-mutated genes caused by the simple sequence repeats (poly-Gs). This was likely a single-source outbreak caused by a group of highly clonal C. coli. This was the first outbreak of severe gastroenteritis caused by C. coli in China.
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  • 文章类型: Journal Article
    In May 2016 a Norovirus (NoV) gastroenteritis outbreak involved a high school class visiting a seaside resort near Taormina (Mascali, Sicily). Twenty-four students and a teacher were affected and 17 of them showed symptoms on the second day of the journey, while the others got ill within the following 2 days. Symptoms included vomiting, diarrhoea and fever, and 12 students required hospitalisation. Stool samples tested positive for NoV genome by Real-Time polymerase chain reaction assay in all 25 symptomatic subjects. The GII.P2/GII.2 NoV genotype was linked to the outbreak by ORF1/ORF2 sequence analysis. The epidemiological features of the outbreak were consistent with food/waterborne followed by person-to-person and/or vomit transmission. Food consumed at a shared lunch on the first day of the trip was associated to illness and drinking un-bottled tap water was also considered as a risk factor. The analysis of water samples revealed the presence of bacterial indicators of faecal contamination in the water used in the resort as well as in other areas of the municipal water network, linking the NoV gastroenteritis outbreak to tap water pollution from sewage leakage. From a single water sample, an amplicon whose sequence corresponded to the capsid genotype recovered from patients could be obtained.
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  • 文章类型: Journal Article
    We previously developed a multiplex real-time PCR assay (Rapid Foodborne Bacterial Screening 24 ver.5, [RFBS24 ver.5]) for simultaneous detection of 24 foodborne bacterial targets. Here, to overcome the discrepancy of the results from RFBS24 ver.5 and bacterial culture methods (BC), we analyzed 246 human clinical samples from 49 gastroenteritis outbreaks using RFBS24 ver.5 and evaluated the correlation between the cycle threshold (CT) value of RFBS24 ver.5 and the BC results. The results showed that the RFBS24 ver.5 was more sensitive than BC for Campylobacter jejuni and Escherichia coli harboring astA or eae, with positive predictive values (PPV) of 45.5-87.0% and a kappa coefficient (KC) of 0.60-0.92, respectively. The CTs were significantly different between BC-positive and -negative samples (p < 0.01). All RFBS24 ver.5-positive samples were BC-positive under the lower confidence interval (CI) limit of 95% or 99% for the CT of the BC-negative samples. We set the 95% or 99% CI lower limit to the determination CT (d-CT) to discriminate for assured BC-positive results (d-CTs: 27.42-30.86), and subsequently the PPVs (94.7%-100.0%) and KCs (0.89-0.95) of the 3 targets were increased. Together, we concluded that the implication of a d-CT-based approach would be a valuable tool for rapid and accurate diagnoses using the RFBS24 ver.5 system.
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  • 文章类型: Journal Article
    一家老年护理医院的30多名居民和护理助理于12月7日至12月18日发生急性肠胃炎,2014年在上海,中国。立即进行流行病学调查,以查明疫情的病因,传播方式和风险因素。根据流行病学调查问卷对病例进行调查。案件样本,收集高度传染性的环境表面和饮用水进行病原体检测。进行了回顾性队列研究以探索传播方式。这次急性肠胃炎疫情共有三十四宗个案受影响,包括23名居民,9名护理助理和2名医生。30份样本中有13份对GII.17诺如病毒呈阳性,未检测到其他病原体。出现胃肠炎症状的护理助理在他们所关心的居民中的发病率高于未出现任何胃肠炎症状的护理助理(p<0.001)。急性胃肠炎疫情是由GII.17诺如病毒引起的。人与人的密切接触和受污染的环境表面是可能的传播途径。护理助理被认为在诺如病毒的二次传播中起重要作用。中国护理助理的不良医疗技能和个人卫生习惯应得到重视和改善,这对于预防医院感染至关重要。
    More than 30 residents and nursing assistants in a geriatric nursing hospital developed acute gastroenteritis from December 7th to December 18th, 2014 in Shanghai, China. An immediate epidemiological investigation was conducted to identify the etiological agent of the outbreak, mode of transmission and the risk factors. Cases were investigated according to an epidemiological questionnaire. Samples from cases, highly transmissible environmental surfaces and drinking water were collected for pathogens detection. A retrospective cohort study was conducted to explore the transmission mode. A total of 34 cases were affected in this acute gastroenteritis outbreak, including 23 residents, 9 nursing assistants and 2 doctors. 13 out of 30 samples were positive for GII.17 norovirus, no other pathogen was detected. Nursing assistants who developed gastroenteritis symptoms had a higher attack rate in residents they cared than those who did not develop any gastroenteritis symptoms (p<0.001). The acute gastroenteritis outbreak was caused by GII.17 norovirus. Person-to-person close contact and contaminated environmental surfaces were the probable transmission route. Nursing assistants were considered to play an important role in the secondary spread of norovirus. The poor medical skill and personal hygiene habits of nursing assistants in China should be paid attention and improved urgently which is critically important to prevent hospital infections.
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  • 文章类型: Journal Article
    BACKGROUND: Norovirus (NoV) is the most common cause of acute nonbacterial gastroenteritis outbreaks worldwide, but the impact of NoV infections in Spain remains underestimated.
    OBJECTIVE: This study aimed to determine the prevalence and genetic diversity of NoVs causing outbreaks of acute gastroenteritis in Northeastern Spain (Catalonia) during 2010-2012, and to compare clinical features and levels of viral shedding of the most prevalent GII.4 2012 variant with its predecessor.
    METHODS: NoVs were screened and genotyped in stools from gastroenteritis outbreaks. Genetic diversity over a region covering 50% of VP1, and viral loads were analyzed in stools belonging to GII.4 2009 and 2012 variants.
    RESULTS: More than 50% of outbreaks were caused by genotype GII.4, although outbreaks caused by multiple strains, GII.6 and GII.1 were also prevalent. During 2012, GII.4 2012 strains clearly replaced GII.4 2009 strains. The first 2012 strain was detected in February 2011, representing the earliest isolate reported worldwide. Epidemiological features of GII.4 2012 and GII.4 2009 outbreaks were comparable, as well as levels of viral shedding in stools. Finally, analysis of the capsid gene showed a higher amino acid variability and diversification in GII.4 2012, affecting sites located at the P2 domain, but also in the shell domain.
    CONCLUSIONS: Clinical features of outbreaks caused by different genotypes circulating in Spain, including outbreaks caused by GII.4 2012 and GII.4 2009 strains, were comparable. Although shed at similar levels than GII.4 2009 strains, GII.4 2012 strains have clearly replaced the previous predominant strain.
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  • 文章类型: Journal Article
    从孟买南部发生的两次急性胃肠炎暴发中收集的粪便标本,印度3月和10月2006年对七种不同的肠道病毒进行了测试。在测试的218个样本中,95(43.6%)为阳性,单个病毒为73(76.8%),多种病毒为22(23.2%)。两种病毒的单一感染,3月和10月显示肠道病毒占优势(EV,33.3%和40%)和轮状病毒A(RVA,33.3%和25%)。这几个月检测到的其他病毒是诺如病毒(NoV,12.1%和10%),轮状病毒B(RVB,12.1%和10%),肠腺病毒(AdV,6.1%和7.5%),阿奇病毒(AiV,3%和7.5%)和人类星状病毒(HAstV,3%和0%)。混合病毒感染主要由两种病毒(84.6%和88.9%)代表,在两次暴发中,一小部分显示存在三种(7.7%和11%)和四种(7.7%和0%)病毒。病毒的基因分型揭示了RVAG2P的优势[4],RVBG2(印度孟加拉血统),NoVGII.4、AdV-40、HAstV-8和AiVB型。基于VP1/2A接合区的基因分型显示存在11种不同血清型的EV。尽管在测试的水样中没有检测到病毒,对胃肠炎受影响地区的水和污水管道的检查表明,泄漏和饮用水被污水污染的可能性。在两次肠胃炎暴发期间,多种肠道病毒并存,这强调了将此类调查扩展到印度其他地区的必要性。
    Faecal specimens collected from two outbreaks of acute gastroenteritis that occurred in southern Mumbai, India in March and October, 2006 were tested for seven different enteric viruses. Among the 218 specimens tested, 95 (43.6%) were positive, 73 (76.8%) for a single virus and 22 (23.2%) for multiple viruses. Single viral infections in both, March and October showed predominance of enterovirus (EV, 33.3% and 40%) and rotavirus A (RVA, 33.3% and 25%). The other viruses detected in these months were norovirus (NoV, 12.1% and 10%), rotavirus B (RVB, 12.1% and 10%), enteric adenovirus (AdV, 6.1% and 7.5%), Aichivirus (AiV, 3% and 7.5%) and human astrovirus (HAstV, 3% and 0%). Mixed viral infections were largely represented by two viruses (84.6% and 88.9%), a small proportion showed presence of three (7.7% and 11%) and four (7.7% and 0%) viruses in the two outbreaks. Genotyping of the viruses revealed predominance of RVA G2P[4], RVB G2 (Indian Bangladeshi lineage), NoV GII.4, AdV-40, HAstV-8 and AiV B types. VP1/2A junction region based genotyping showed presence of 11 different serotypes of EVs. Although no virus was detected in the tested water samples, examination of both water and sewage pipelines in gastroenteritis affected localities indicated leakages and possibility of contamination of drinking water with sewage water. Coexistence of multiple enteric viruses during the two outbreaks of gastroenteritis emphasizes the need to expand such investigations to other parts of India.
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