extinction risk

灭绝风险
  • 文章类型: Journal Article
    苔藓是植物王国的早期谱系,大约有13,000个物种。虽然是生物多样性的重要组成部分,提供关键的生态系统服务,许多物种面临灭绝的威胁。然而,到目前为止,只有大约300种物种对IUCN红色名录进行了全球灭绝风险评估。已知功能性状有助于预测其他植物群体中物种的灭绝风险。在这项研究中,为来自世界各地的723种苔藓物种制作了15种功能性状的矩阵,以评估这种可预测性的潜力。二元广义线性模型表明,单质物种比双质物种更容易受到威胁,和孢子体的存在(有性生殖),植物性繁殖和直立的(直的)胶囊而不是悬垂的(浸入的)胶囊降低了物种灭绝的风险。一个较长的胶囊,刚毛和茎长度,以及更广泛的底物宽度,表明物种灭绝风险较低。表现最好的模型几乎没有特征,能够以很好的准确性预测物种的灭绝风险。这些应用于数据缺陷(DD)物种的模型证明了它们在加快IUCN红色名录评估过程同时减少列出的DD物种数量方面的有用性,通过选择最需要完整的物种,详细评估。在这项研究中测试的一些特征在苔藓的保护研究中是新颖的,为未来的研究开辟了新的可能性。所研究的特征和此处介绍的模型对濒临灭绝的苔藓知识做出了重大贡献,并将有助于改善保护工作。
    Mosses are an early lineage of the plant kingdom, with around 13,000 species. Although an important part of biodiversity, providing crucial ecosystem services, many species are threatened with extinction. However, only circa 300 species have so far had their extinction risk evaluated globally for the IUCN Red List. Functional traits are known to help predict the extinction risk of species in other plant groups. In this study, a matrix of 15 functional traits was produced for 723 moss species from around the world to evaluate the potential of such predictability. Binary generalized linear models showed that monoicous species were more likely to be threatened than dioicous species, and the presence of a sporophyte (sexual reproduction), vegetative reproduction and an erect (straight) capsule instead of a pendent (immersed) one lowers the risk of species extinction. A longer capsule, seta and stem length, as well as broader substrate breadth, are indicative of species with a lower risk of extinction. The best-performing models fitted with few traits were able to predict extinction risks of species with good accuracy. These models applied to Data Deficient (DD) species proved how useful they may be to speed up the IUCN Red List assessment process while reducing the number of listed DD species, by selecting species most in need of a full, detailed assessment. Some traits tested in this study are a novelty in conservation research on mosses, opening new possibilities for future studies. The traits studied and the models presented here are a significant contribution to the knowledge of mosses at risk of extinction and will help to improve conservation efforts.
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  • 文章类型: Journal Article
    美国热带地区的季节性热带干旱森林(SDTFs)是一个高度多样化但鲜为人知的濒危生态系统,从墨西哥北部到阿根廷南部。STDFs的一个植物区系元素是Magoniella属(Polygonaceae),其中包括两种藤本植物,laurifolia和M.obidensis,这些水果有翼,从哥斯达黎加分发到巴西南部。在2015年对哥伦比亚加勒比海SDTF的实地考察中,发现了形态上独特的Magoniella个体。在这项研究中,我们调查了Magoniella内部的物种边界,并确定了这些形态上独特的个体在Triplaridae部落中的系统发育位置。我们汇总了这两个物种的19个标本的形态特征数据,并产生了新测序的obidensis核质体DNA数据。形态计量学分析显示,与obidensis相比,哥伦比亚加勒比海地区的个体在果实长度和花被大小上存在显着差异。非冲突核和质体数据集的最大似然分析将哥伦比亚加勒比海个体作为M.obidensis的姐妹,并提供了最大的统计支持。此外,核核糖体ITS和lfy2i基因座的成对序列比较始终显示15点突变(10个转换,5个颠换)和6个2bp长的替换,在M.obidensis和哥伦比亚加勒比海个体之间存在差异。因此,我们的形态学和分子证据表明,Magoniella的哥伦比亚加勒比海个体代表了与laurifolia和obidensis不同的种群,我们将其描述和说明为一个新物种,M.Chersina.此外,我们提供了蓝藻和奥比纳氏菌的最新命名。这项研究强调了在记录和命名植物多样性方面结合形态和分子证据的力量。
    Seasonally tropical dry forests (SDTFs) in the American tropics are a highly diverse yet poorly understood and endangered ecosystem scattered from Northern Mexico to Southern Argentina. One floristic element of the STDFs is the genus Magoniella (Polygonaceae), which includes two liana species, M. laurifolia and M. obidensis, which have winged fruits and are distributed from Costa Rica to Southern Brazil. In a field expedition to the SDTFs of the Colombian Caribbean in 2015, morphologically distinctive individuals of Magoniella were found. In this study, we investigated the species boundaries within Magoniella and determined the phylogenetic position of these morphologically distinctive individuals in the tribe Triplaridae. We compiled morphological trait data across 19 specimens of both species and produced newly sequenced nuclear-plastid DNA data for M. obidensis. Morphometric analyses revealed significant differences in fruit length and perianth size among individuals from the Colombian Caribbean compared to M. obidensis and bract length when compared to M. laurifolia. Maximum likelihood analysis of non-conflicting nuclear and plastid datasets placed the Colombian Caribbean individuals as sister to M. obidensis with maximum statistical support. Additionally, pairwise sequence comparisons of the nuclear ribosomal ITS and the lfy2i loci consistently showed 15-point mutations (10 transitions, five transversions) and six 2 bp-long substitutions that differ between M. obidensis and the Colombian Caribbean individuals. Our morphological and molecular evidence thus suggests that the Colombian Caribbean individuals of Magoniella represent a divergent population from M. laurifolia and M. obidensis, which we describe and illustrate as a new species, M. chersina. Additionally, we provide nomenclatural updates for M. laurifolia and M. obidensis. This study highlights the power of combining morphological and molecular evidence in documenting and naming plant diversity.
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  • 文章类型: Journal Article
    预计气候变化将导致物种向上和向极地移动它们的范围,然而,对于全球最高海拔和纬度的范围限制物种,追踪合适的栖息地条件的空间可能有限。因此,居住在北极淡水生态系统中的限制物种,全球变暖最明显的地方,面对应对不断变化的非生物和生物条件或灭绝风险的挑战。这里,我们使用斯堪的纳维亚(1990年代中期)采样的1762个湖泊的广泛鱼类群落和环境数据集来评估北极炭(Salvelinusalpinus)的气候脆弱性,世界上最适应寒冷和分布最北的淡水鱼。机器学习模型表明,非生物和生物因素强烈预测了整个地区北极炭的发生,总体准确率为89%。北极炭不太可能发生在夏季温度温暖的湖泊中,高溶解有机碳水平(即褐变),以及北部派克(EsoxLucius)的存在。重要的是,气候变暖的影响受到栖息地的缓和(即,湖区),并因竞争对手和/或捕食者的存在而放大(即,北派克)。RCP8.5排放情景下的气候变暖预测表明,到2080年,现有人口中有81%处于灭绝的高风险中。高度脆弱的人群遍布他们的范围,特别是在南部范围附近和较低的海拔,在一些山区和沿海地区发现了潜在的避难所。我们的发现强调,对于这位冷水专家来说,范围变化可能会让位于范围收缩,表明需要积极的保护和缓解努力,以避免北极淡水生物多样性的丧失。
    Climate change is anticipated to cause species to shift their ranges upward and poleward, yet space for tracking suitable habitat conditions may be limited for range-restricted species at the highest elevations and latitudes of the globe. Consequently, range-restricted species inhabiting Arctic freshwater ecosystems, where global warming is most pronounced, face the challenge of coping with changing abiotic and biotic conditions or risk extinction. Here, we use an extensive fish community and environmental dataset for 1762 lakes sampled across Scandinavia (mid-1990s) to evaluate the climate vulnerability of Arctic char (Salvelinus alpinus), the world\'s most cold-adapted and northernly distributed freshwater fish. Machine learning models show that abiotic and biotic factors strongly predict the occurrence of Arctic char across the region with an overall accuracy of 89 percent. Arctic char is less likely to occur in lakes with warm summer temperatures, high dissolved organic carbon levels (i.e., browning), and presence of northern pike (Esox lucius). Importantly, climate warming impacts are moderated by habitat (i.e., lake area) and amplified by the presence of competitors and/or predators (i.e., northern pike). Climate warming projections under the RCP8.5 emission scenario indicate that 81% of extant populations are at high risk of extirpation by 2080. Highly vulnerable populations occur across their range, particularly near the southern range limit and at lower elevations, with potential refugia found in some mountainous and coastal regions. Our findings highlight that range shifts may give way to range contractions for this cold-water specialist, indicating the need for pro-active conservation and mitigation efforts to avoid the loss of Arctic freshwater biodiversity.
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  • 文章类型: Journal Article
    Assessing the extinction risk of species based on the International Union for Conservation of Nature (IUCN) Red List (RL) is key to guiding conservation policies and reducing biodiversity loss. This process is resource demanding, however, and requires continuous updating, which becomes increasingly difficult as new species are added to the RL. Automatic methods, such as comparative analyses used to predict species RL category, can be an efficient alternative to keep assessments up to date. Using amphibians as a study group, we predicted which species are more likely to change their RL category and thus should be prioritized for reassessment. We used species biological traits, environmental variables, and proxies of climate and land-use change as predictors of RL category. We produced an ensemble prediction of IUCN RL category for each species by combining 4 different model algorithms: cumulative link models, phylogenetic generalized least squares, random forests, and neural networks. By comparing RL categories with the ensemble prediction and accounting for uncertainty among model algorithms, we identified species that should be prioritized for future reassessment based on the mismatch between predicted and observed values. The most important predicting variables across models were species\' range size and spatial configuration of the range, biological traits, climate change, and land-use change. We compared our proposed prioritization index and the predicted RL changes with independent IUCN RL reassessments and found high performance of both the prioritization and the predicted directionality of changes in RL categories. Ensemble modeling of RL category is a promising tool for prioritizing species for reassessment while accounting for models\' uncertainty. This approach is broadly applicable to all taxa on the IUCN RL and to regional and national assessments and may improve allocation of the limited human and economic resources available to maintain an up-to-date IUCN RL.
    Uso del análisis comparativo del riesgo de extinción para priorizar la reevaluación de los anfibios en la Lista Roja de la UICN Resumen El análisis del riesgo de extinción de una especie con base en la Lista Roja (LR) de la Unión Internacional para la Conservación de la Naturaleza (UICN) es clave para guiar las políticas de conservación y reducir la pérdida de la biodiversidad. Sin embargo, este proceso demanda recursos y requiere de actualizaciones continuas, lo que se complica conforme se añaden especies nuevas a la LR. Los métodos automáticos, como los análisis comparativos usados para predecir la categoría de la especie en la LR, pueden ser una alternativa eficiente para mantener actualizados los análisis. Usamos a los anfibios como grupo de estudio para predecir cuáles especies tienen mayor probabilidad de cambiar de categoría en la LR y que, por lo tanto, se debería priorizar su reevaluación. Usamos las características biológicas de la especie, las variables ambientales e indicadores climáticos y del cambio de uso de suelo como predictores de la categoría en la LR. Elaboramos una predicción de ensamble de la categoría en la LR de la UICN para cada especie mediante la combinación de cuatro algoritmos diferentes: modelos de vínculo acumulativo, menor número de cuadros filogenéticos generalizados, bosques aleatorios y redes neurales. Con la comparación entre las categorías de la LR y la predicción de ensamble y con considerar la incertidumbre entre los algoritmos identificamos especies que deberían ser prioridad para futuras reevaluaciones con base en el desfase entre los valores predichos y los observados. Las variables de predicción más importantes entre los modelos fueron el tamaño de la distribución de la especie y su configuración espacial, las características biológicas, el cambio climático y el cambio de uso de suelo. Comparamos nuestra propuesta de índice de priorización y los cambios predichos en la LR con las reevaluaciones independientes de la LR de la UICN y descubrimos un buen desempeño tanto para la priorización como para la direccionalidad predicha de los cambios en las categorías de la LR. El modelo de ensamble de la categoría de la LR esa una herramienta prometedora para priorizar la reevaluación de las especies a la vez que considera la incertidumbre del modelo. Esta estrategia puede generalizarse para aplicarse a todos los taxones de la LR de la UICN y a los análisis regionales y nacionales. También podría mejorar la asignación de los recursos humanos y económicos limitados disponibles para mantener actualizada la LR de la UICN.
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  • 文章类型: Comment
    VonSchmalensee等人。对我们的研究有两个担忧。虽然第一个源于对我们的模拟方法的普遍分歧,第二个是对我们做出的影响模拟结果的建模选择的有用观察,但以不使我们最初的结论无效的方式。
    Von Schmalensee et al. present two concerns about our study. While the first stems from a general disagreement about our simulation methodology, the second is a useful observation of a modelling choice we made that affected simulation outcomes, but in ways that do not invalidate our original conclusions.
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  • 文章类型: Letter
    在他们的模拟研究中,Garcia-Costoya等人.(2023)得出结论,进化限制可能有助于面临气候变化的人口。然而,我们担心这个结论在很大程度上是模拟温度变化太小的结果,and,最重要的是,站立变异的不均匀限制不利于不受约束的人群。
    In their simulation study, Garcia-Costoya et al. (2023) conclude that evolutionary constraints might aid populations facing climate change. However, we are concerned that this conclusion is largely a consequence of the simulated temperature variation being too small, and, most importantly, that uneven limitations to standing variation disadvantage unconstrained populations.
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  • 文章类型: Journal Article
    特有的岛屿物种面临着气候变化导致的更高的灭绝风险,然而,标准模型往往低估了像海葵一样的威胁级别,标志性的塞浦路斯橡木,预适应干旱。通过物种分布建模,我们调查了在未来气候和土地利用变化情景下其分布的潜在变化。我们的方法独特地结合了分散约束,详细的土壤特性,水文因素,和预期的土壤侵蚀数据,提供环境适宜性的全面评估。我们量化了物种的敏感性,暴露,以及对预期变化的脆弱性,根据标准A和B进行初步的IUCN灭绝风险评估。我们的预测一致预测范围减少,在最极端的情况下,到2070年代,中位数下降了67.8%。此外,我们的研究表明,在特定的年温度范围内,槲树对各种侵蚀条件的复原力和对相对干燥的气候的偏好。世界自然保护联盟的初步风险评估指出,阿尼福兰未来将严重濒危,强调需要集中保护工作。气候和土地利用的变化是对物种生存的严重威胁,强调综合建模技术的重要性,以及迫切需要采取专门的保护措施来保护这一标志性物种。
    Endemic island species face heightened extinction risk from climate-driven shifts, yet standard models often underestimate threat levels for those like Quercus alnifolia, an iconic Cypriot oak with pre-adaptations to aridity. Through species distribution modelling, we investigated the potential shifts in its distribution under future climate and land-use change scenarios. Our approach uniquely combines dispersal constraints, detailed soil characteristics, hydrological factors, and anticipated soil erosion data, offering a comprehensive assessment of environmental suitability. We quantified the species\' sensitivity, exposure, and vulnerability to projected changes, conducting a preliminary IUCN extinction risk assessment according to Criteria A and B. Our projections uniformly predict range reductions, with a median decrease of 67.8% by the 2070s under the most extreme scenarios. Additionally, our research indicates Quercus alnifolia\'s resilience to diverse erosion conditions and preference for relatively dry climates within a specific annual temperature range. The preliminary IUCN risk assessment designates Quercus alnifolia as Critically Endangered in the future, highlighting the need for focused conservation efforts. Climate and land-use changes are critical threats to the species\' survival, emphasising the importance of comprehensive modelling techniques and the urgent requirement for dedicated conservation measures to safeguard this iconic species.
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  • 文章类型: Journal Article
    爬行动物是一个重要的,但经常被研究不足,自然保护中的分类单元。它们在生态系统中起着重要的作用1,可以作为环境健康的指标,通常比其他脊椎动物对人类压力的反应更快。2目前,至少有21%的爬行动物被评估为濒临灭绝的威胁。由于直到最近还缺乏全面的全球评估,在解决保护或空间优先次序的空间研究中省略了它们(例如,Rosauer等人。,4,5,6,7,8弗里茨和拉贝克,4,5,6,7,8Farooq等人。,4,5,6,7,8Meyer等人。,4,5,6,7,8和Farooq等4,5,6,7,8)。保护方面的一个重要知识差距是缺乏关于生物多样性主要威胁的空间明确信息,9,这显著阻碍了我们有效应对当前生物多样性危机的能力。10,11在这项研究中,我们计算了特定位置的爬行动物物种受到七种生物多样性威胁之一-农业影响的概率,气候变化,狩猎,入侵物种,测井,污染,和城市化。我们在全球范围内进行了分析,使用50公里×50公里的网格,并通过研究它们与灭绝风险的关系来评估这些威胁的影响。我们发现气候变化,测井,污染,入侵物种与灭绝风险联系最大。然而,我们还表明,这些结果存在相当大的地理差异。我们的研究强调了超越衡量威胁强度的重要性,以衡量这些威胁对世界各个生物地理区域的影响。在不同的历史偶然性下,而不是单一的全球分析对待所有地区都一样。
    Reptiles are an important, yet often understudied, taxon in nature conservation. They play a significant role in ecosystems1 and can serve as indicators of environmental health, often responding more rapidly to human pressures than other vertebrate groups.2 At least 21% of reptiles are currently assessed as threatened with extinction by the IUCN.3 However, due to the lack of comprehensive global assessments until recently, they have been omitted from spatial studies addressing conservation or spatial prioritization (e.g., Rosauer et al.,4,5,6,7,8 Fritz and Rahbek,4,5,6,7,8 Farooq et al.,4,5,6,7,8 Meyer et al., 4,5,6,7,8 and Farooq et al.4,5,6,7,8). One important knowledge gap in conservation is the lack of spatially explicit information on the main threats to biodiversity,9 which significantly hampers our ability to respond effectively to the current biodiversity crisis.10,11 In this study, we calculate the probability of a reptile species in a specific location being affected by one of seven biodiversity threats-agriculture, climate change, hunting, invasive species, logging, pollution, and urbanization. We conducted the analysis at a global scale, using a 50 km × 50 km grid, and evaluated the impact of these threats by studying their relationship with the risk of extinction. We find that climate change, logging, pollution, and invasive species are most linked to extinction risk. However, we also show that there is considerable geographical variation in these results. Our study highlights the importance of going beyond measuring the intensity of threats to measuring the impact of these separately for various biogeographical regions of the world, with different historical contingencies, as opposed to a single global analysis treating all regions the same.
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  • 文章类型: Journal Article
    我们研究了一个描述猎物和捕食者种群动力学的常微分方程系统,考虑到影响捕食者种群繁殖的Allee效应,以及捕食者之间的相互干扰,用Bazykin-Crowley-Martin(BCM)营养功能建模。分叉分析揭示了系统中发生的分叉的丰富光谱。特别是,鞍形节点的分析条件,Hopf,尖点,并推导了模型参数的Bogdanov-Takens分叉,量化捕食者干扰的强度,Allee效应,以及捕食效率。数值模拟验证和说明了分析结果。研究的主要目的是测试具有BCM营养功能的模型中的相互干扰是否对系统动力学产生稳定或不稳定的影响。获得的结果表明,该模型在质量上证明了与其他依赖捕食者的模型相同的干扰强度变化模式:低和非常高的干扰水平都会增加捕食者灭绝的风险,而适度的干扰对食饵-捕食者系统的稳定性和恢复力有有利的影响。
    We investigated a system of ordinary differential equations that describes the dynamics of prey and predator populations, taking into account the Allee effect affecting the reproduction of the predator population, and mutual interference amongst predators, which is modeled with the Bazykin-Crowley-Martin (BCM) trophic function. Bifurcation analysis revealed a rich spectrum of bifurcations occurring in the system. In particular, analytical conditions for the saddle-node, Hopf, cusp, and Bogdanov-Takens bifurcations were derived for the model parameters, quantifying the strength of the predator interference, the Allee effect, and the predation efficiency. Numerical simulations verify and illustrate the analytical findings. The main purpose of the study was to test whether the mutual interference in the model with BCM trophic function provides a stabilizing or destabilizing effect on the system dynamics. The obtained results suggest that the model demonstrates qualitatively the same pattern concerning varying the interference strength as other predator-dependent models: both low and very high interference levels increase the risk of predator extinction, while moderate interference has a favorable effect on the stability and resilience of the prey-predator system.
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  • 文章类型: Journal Article
    随着土地饥饿的热带商品的迅速扩张,大量的全球恢复承诺正在发生,包括供应日益增长的木制品需求。未来的商业树木种植园可能会带来高木材产量,缩小生产林业的足迹,但是还有一个尚未量化的风险,即种植园可能会扩展到优先恢复地区,显著的环境成本。重点关注巴西-一个具有特殊恢复重要性的国家,也是最大的热带木材生产国之一-我们使用随机森林模型和有关经济,社会,和历史商业树木种植扩张的空间驱动因素,以估计和绘制2020年至2030年未来单一种植树木种植扩张的可能性。然后,我们在国家和生物群落规模以及不同的未来生产和恢复途径下评估潜在的人工林恢复冲突和机会。我们的模拟表明,在未来的种植园扩张中,2.8Mha(相当于2010-2020年的种植园扩张),预计陆地脊椎动物恢复优先区域的前1%将发生约78,000公顷(3%),在前10%和30%的优先区域中,约有547,500公顷(20%)和约1,300,000公顷(46%),分别。在低恢复地区(恢复优先级最低的30%)内,预计仅有约459,000公顷(16%)的扩展,种植园扩张的头1Mha可能会产生不成比例的影响,在大西洋森林中,潜在的恢复人工林重叠最为明显,但在潘帕斯和塞拉多也很突出。我们的研究结果表明,健壮,必须部署连贯的土地使用政策,以确保在恢复和生产目标之间进行重大权衡,商品扩张不会破坏新兴的全球恢复议程下最容易处理的保护收益。他们还强调了参与的林业部门在改善巴西恢复项目的生物多样性成果方面可能发挥的潜在重要作用,大概在其他地方。
    Substantial global restoration commitments are occurring alongside a rapid expansion in land-hungry tropical commodities, including to supply increasing demand for wood products. Future commercial tree plantations may deliver high timber yields, shrinking the footprint of production forestry, but there is an as-yet unquantified risk that plantations may expand into priority restoration areas, with marked environmental costs. Focusing on Brazil-a country of exceptional restoration importance and one of the largest tropical timber producers-we use random forest models and information on the economic, social, and spatial drivers of historic commercial tree plantation expansion to estimate and map the probability of future monoculture tree plantation expansion between 2020 and 2030. We then evaluate potential plantation-restoration conflicts and opportunities at national and biome-scales and under different future production and restoration pathways. Our simulations show that of 2.8 Mha of future plantation expansion (equivalent to plantation expansion 2010-2020), ~78,000 ha (3%) is forecast to occur in the top 1% of restoration priority areas for terrestrial vertebrates, with ~547,500 ha (20%) and ~1,300,000 ha (46%) in the top 10% and 30% of priority areas, respectively. Just ~459,000 ha (16%) of expansion is forecast within low-restoration areas (bottom 30% restoration priorities), and the first 1 Mha of plantation expansion is likely to have disproportionate impacts, with potential restoration-plantation overlap starkest in the Atlantic Forest but prominent in the Pampas and Cerrado as well. Our findings suggest that robust, coherent land-use policies must be deployed to ensure that significant trade-offs between restoration and production objectives are navigated, and that commodity expansion does not undermine the most tractable conservation gains under emerging global restoration agendas. They also highlight the potentially significant role an engaged forestry sector could play in improving biodiversity outcomes in restoration projects in Brazil, and presumably elsewhere.
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