enterobacteria

肠杆菌
  • 文章类型: Journal Article
    我们研究了高温和杀生物剂对Cronobacterspp的食物分离株的生存能力的影响。(C.Sakazakii)和在婴儿营养产品的微生物学控制中获得的伴随的肠杆菌科。某些Cronobacter菌株的耐药性增加,阴沟肠杆菌,和泛菌属。对热处理的揭示。沙门氏菌,泛菌,和Cronobacter细菌对含氯药物的抗菌作用最不敏感。上述特性在同一物种的菌株中有所不同。具体来说,三个检查的克隆杆菌属分离株中只有两个。与其他物种的肠细菌测试培养物相比,对热的敏感性较低。
    We examined the effects of elevated temperatures and biocides on survivability of food isolates of Cronobacter spp. (C. sakazakii) and concomitant enterobacteriaceae obtained in microbiological control of infant nutrition products. Increased resistance of certain strains of Cronobacter, Enterobacter cloacae, and Pantoea spp. to thermal processing was revealed. Salmonella, Pantoea, and Cronobacter bacteria were least sensitive to antimicrobial action of chlorine-containing agents. The above properties varied in the strains of the same species. Specifically, only two of three examined isolates of Cronobacter spp. demonstrated lower sensitivity to heat in comparison with the enterobacterial test-cultures of other species.
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  • 文章类型: Journal Article
    细胞外囊泡(EV)最近成为寄生虫感染病理生理学中的重要参与者。虽然原生寄生虫十二指肠贾第鞭毛虫可以产生电动汽车,它们在贾第鞭毛虫病中的作用仍然不清楚。贾第鞭毛虫可以破坏肠道微生物群生物膜,并通过未知的机制将共生细菌转化为在没有定植滋养体的部位的侵袭性病原体。我们假设贾第虫EV可以通过一种新型的跨王国交流模式来改变肠道细菌行为。我们的发现表明,贾第鞭毛虫EV对大肠杆菌HB101和阴沟肠杆菌TW1具有抑菌作用,从而增加了它们的游泳运动能力。贾第虫EV还降低了大肠杆菌HB101的生物膜形成能力,但不降低阴沟肠杆菌TW1的生物膜形成能力,支持以下假设:至少在某种程度上,细菌选择性。大肠杆菌HB101和阴沟肠杆菌TW1在暴露于贾第虫EV时表现出对小肠上皮细胞的粘附/侵袭增加。用PKH67标记的EV显示与大肠杆菌HB101和阴沟肠杆菌TW1细菌细胞共定位。小RNA测序显示了高丰度的核糖体RNA(rRNA)和转移RNA(tRNA)衍生的小RNA,贾第鞭毛虫电动汽车内的短干扰RNA(siRNA)和微RNA(miRNA)。电动汽车的蛋白质组学分析揭示了RNA伴侣和热休克蛋白的存在,这些蛋白可以促进电动汽车及其sRNA货物的热稳定性,以及蛋白质修饰酶。体外,RNase热处理实验表明,电动汽车中的总RNA,但不是蛋白质,负责调节细菌游泳运动和生物膜形成。电动汽车的十二指肠小RNA,但不是蛋白质,是导致暴露于贾第虫EV后诱导的细菌与肠上皮细胞粘附增加的原因。一起,研究结果表明,贾第虫电动汽车含有热稳定的,RNase敏感的货物,可以触发肠杆菌的病理生物学特征的发展,描绘了肠道中的一种新颖的跨王国相声。
    Extracellular vesicles (EVs) recently emerged as important players in the pathophysiology of parasitic infections. While the protist parasite Giardia duodenalis can produce EVs, their role in giardiasis remains obscure. Giardia can disrupt gut microbiota biofilms and transform commensal bacteria into invasive pathobionts at sites devoid of colonizing trophozoites via unknown mechanisms. We hypothesized that Giardia EVs could modify gut bacterial behaviour via a novel mode of trans-kingdom communication. Our findings indicate that Giardia EVs exert bacteriostatic effects on Escherichia coli HB101 and Enterobacter cloacae TW1, increasing their swimming motility. Giardia EVs also decreased the biofilm-forming ability of E. coli HB101 but not by E. cloacae TW1, supporting the hypothesis that these effects are, at least in part, bacteria-selective. E. coli HB101 and E. cloacae TW1 exhibited increased adhesion/invasion onto small intestine epithelial cells when exposed to Giardia EVs. EVs labelled with PKH67 revealed colocalization with E. coli HB101 and E. cloacae TW1 bacterial cells. Small RNA sequencing revealed a high abundance of ribosomal RNA (rRNA)- and transfer RNA (tRNA)-derived small RNAs, short-interfering RNAs (siRNAs) and micro-RNAs (miRNAs) within Giardia EVs. Proteomic analysis of EVs uncovered the presence of RNA chaperones and heat shock proteins that can facilitate the thermal stability of EVs and its sRNA cargo, as well as protein-modifying enzymes. In vitro, RNase heat-treatment assays showed that total RNAs in EVs, but not proteins, are responsible for modulating bacterial swimming motility and biofilm formation. G. duodenalis small RNAs of EVs, but not proteins, were responsible for the increased bacterial adhesion to intestinal epithelial cells induced upon exposure to Giardia EVs. Together, the findings indicate that Giardia EVs contain a heat-stable, RNase-sensitive cargo that can trigger the development of pathobiont characteristics in Enterobacteria, depicting a novel trans-kingdom cross-talk in the gut.
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  • 文章类型: Journal Article
    BACKGROUND: Pink coloration of breast milk is uncommon and it´s associated with colonization by Serratia marcescens, which is most frequently isolated in intensive care settings. Misinterpretation of the pink coloration may lead to premature cessation of breastfeeding. The objective is to present four cases of pink discoloration.
    METHODS: Two retrospective and two prospective cases of pink discoloration in breast milk are described, which were reported to the lead author.
    RESULTS: Four healthy mother-infant pairs with documented pink discoloration are presented. S. marcescens was isolated from breast milk samples. All four infants were asymptomatic and underwent enterobacteria cultures. The mothers received outpatient antibiotic treatment, and two infants received treatment as well. Subsequent cultures yielded negative results, and the pink discoloration ceased. All mothers successfully resumed breastfeeding.
    CONCLUSIONS: There are very few reported cases of pink breast milk in the global literature. Colonization by S. marcescens is not an indication for discontinuation of breastfeeding.
    UNASSIGNED: La coloración rosa de la leche materna es poco frecuente y está asociada a colonización por Serratia marcescens. Se aísla con mayor frecuencia en entornos de cuidados intensivos. La desinformación por la coloración rosa puede conducir a una terminación prematura de la lactancia. El objetivo es presentar cuatro casos de coloración rosa de la leche materna.
    UNASSIGNED: Se describen dos casos retrospectivos y dos prospectivos de presentación de leche materna de color rosa. Los casos fueron reportados a la autora principal.
    RESULTS: Se presentan cuatro binomios sanos con reporte de coloración rosa. Se aisló S. marcescens en una muestra de leche materna. Los cuatro lactantes eran asintomáticos y tuvieron cultivos para la enterobacteria. Las madres fueron tratadas con antibiótico ambulatorio. Dos lactantes recibieron tratamiento. Todos los cultivos posteriores fueron negativos y la coloración rosa cesó. Todos reanudaron la lactancia materna de forma exitosa.
    CONCLUSIONS: Existen muy pocos casos de leche de color rosa reportados en la literatura mundial. La colonización por S. marcescens no es una indicación de suspensión de la lactancia.
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  • 文章类型: Journal Article
    抗菌药物在兽医和人类医学中都是至关重要的治疗方法,协助控制和预防传染病。然而,它们的滥用或过度使用导致了抗菌素耐药性的出现,对公众健康构成重大威胁。本文综述了动物及其相关食品中产生超广谱β-内酰胺酶(ESBL)的大肠杆菌,这有助于抗菌耐药菌株的增殖。最近的研究强调了在动物和动物源性食品中存在产生ESBL的大肠杆菌,一些研究表明这些分离株与人类感染中发现的分离株之间的遗传相似性。这强调了迫切需要解决作为紧迫的公共卫生问题的抗菌素耐药性。需要进行更全面的研究,以了解ESBLs的不断发展的格局,并制定以“一个健康”方法为基础的战略性公共卫生政策。旨在有效控制和减轻其患病率。
    Antimicrobials serve as crucial treatments in both veterinary and human medicine, aiding in the control and prevention of infectious diseases. However, their misuse or overuse has led to the emergence of antimicrobial resistance, posing a significant threat to public health. This review focuses on extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli in animals and their associated food products, which contribute to the proliferation of antimicrobial-resistant strains. Recent research has highlighted the presence of ESBL-producing E. coli in animals and animal-derived foods, with some studies indicating genetic similarities between these isolates and those found in human infections. This underscores the urgent need to address antimicrobial resistance as a pressing public health issue. More comprehensive studies are required to understand the evolving landscape of ESBLs and to develop strategic public health policies grounded in the One Health approach, aiming to control and mitigate their prevalence effectively.
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  • 文章类型: Journal Article
    在COVID-19大流行期间,耐碳青霉烯类肺炎克雷伯菌在全球人类临床环境中的发生率增加.受到这种增长的影响,携带碳青霉烯酶编码基因的国际高风险克隆已经在不同的来源传播,包括环境。blaKPC基因是全球最常见的碳青霉烯酶编码基因,其传播是由不同的移动遗传元件进行的。在这项研究中,blaKPC-2阳性肺炎克雷伯菌复合菌株分离自不同的受人为影响的水生生态系统,并使用表型进行表征,分子,和基因组方法。肺炎克雷伯菌复合菌株表现出多重耐药和广泛耐药的特征,突出碳青霉烯类抗生素的抗性,头孢他啶-阿维巴坦,粘菌素,还有替加环素,这被认为是最后的抗菌治疗选择。分子分析显示存在几种耐药性,毒力,和金属耐受基因。深入分析显示blaKPC-2基因与三种不同的Tn4401同工型(即,Tn4401a,Tn4401b,和Tn4401i)和NTEKPC元素。检测到不同的质粒复制子,并突出显示了带有与Tn4401i相关的blaKPC-2基因的接合IncN-pST15质粒。属于国际高风险的肺炎克雷伯菌复杂菌株(例如,ST11和ST340)和不寻常的克隆(例如,ST323、ST526和ST4216)先前与临床设置相关联。在这种情况下,环境部门首次报道了一些克隆。因此,这些发现证明了水生生态系统中产生碳青霉烯酶的肺炎克雷伯菌复合菌株的发生,并有助于全球碳青霉烯耐药性的监测.
    During the COVID-19 pandemic, the occurrence of carbapenem-resistant Klebsiella pneumoniae increased in human clinical settings worldwide. Impacted by this increase, international high-risk clones harboring carbapenemase-encoding genes have been circulating in different sources, including the environment. The blaKPC gene is the most commonly disseminated carbapenemase-encoding gene worldwide, whose transmission is carried out by different mobile genetic elements. In this study, blaKPC-2-positive Klebsiella pneumoniae complex strains were isolated from different anthropogenically affected aquatic ecosystems and characterized using phenotypic, molecular, and genomic methods. K. pneumoniae complex strains exhibited multidrug-resistant and extensively drug-resistant profiles, spotlighting the resistance to carbapenems, ceftazidime-avibactam, colistin, and tigecycline, which are recognized as last-line antimicrobial treatment options. Molecular analysis showed the presence of several antimicrobial resistance, virulence, and metal tolerance genes. In-depth analysis showed that the blaKPC-2 gene was associated with three different Tn4401 isoforms (i.e., Tn4401a, Tn4401b, and Tn4401i) and NTEKPC elements. Different plasmid replicons were detected and a conjugative IncN-pST15 plasmid harboring the blaKPC-2 gene associated with Tn4401i was highlighted. K. pneumoniae complex strains belonging to international high-risk (e.g., ST11 and ST340) and unusual clones (e.g., ST323, ST526, and ST4216) previously linked to clinical settings. In this context, some clones were reported for the first time in the environmental sector. Therefore, these findings evidence the occurrence of carbapenemase-producing K. pneumoniae complex strains in aquatic ecosystems and contribute to the monitoring of carbapenem resistance worldwide.
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  • 文章类型: Journal Article
    The multifactorial etiology of gastroenteritis emphasizes the need for different laboratory methods to identify or exclude infectious agents and evaluate the severity of diarrheal disease.
    To diagnose the infectious etiology in diarrheic children and to evaluate some fecal markers associated with intestinal integrity.
    The study group comprised 45 children with diarrheal disease, tested for enteropathogens and malabsorption markers, and 76 children whose feces were used for fat evaluation by the traditional and acid steatocrit tests.
    We observed acute diarrhea in 80% of the children and persistent diarrhea in 20%. Of the diarrheic individuals analyzed, 40% were positive for enteropathogens, with rotavirus (13.3%) and Giardia duodenalis (11.1%) the most frequently diagnosed. Among the infected patients, occult blood was more evident in those carrying pathogenic bacteria (40%) and enteroviruses (40%), while steatorrhea was observed in infections by the protozoa G. duodenalis (35.7%). Children with diarrhea excreted significantly more lipids in feces than non-diarrheic children, as determined by the traditional (p<0.0003) and acid steatocrit (p<0.0001) methods. Moreover, the acid steatocrit method detected 16.7% more fecal fat than the traditional method.
    Childhood diarrhea can lead to increasingly severe nutrient deficiencies. Steatorrhea is the hallmark of malabsorption, and a stool test, such as the acid steatocrit, can be routinely used as a laboratory tool for the semi-quantitative evaluation of fat malabsorption in diarrheic children.
    Introducción. La etiología multifactorial de la gastroenteritis enfatiza la necesidad de usar diferentes métodos de laboratorio para identificar o excluir agentes infecciosos y evaluar la gravedad de la enfermedad diarreica. Objetivo. Diagnosticar la etiología infecciosa de la diarrea en niños y evaluar algunos marcadores fecales asociados con la integridad intestinal. Materiales y métodos. Se estudiaron 45 niños con enfermedad diarreica, en los cuales se evaluaron la presencia de enteropatógenos y los marcadores de malabsorción. Se analizaron las muestras fecales de 76 niños, mediante las pruebas de esteatocrito tradicional y esteatocrito ácido, para la cuantificación de la grasa. Resultados. Se observó diarrea aguda en el 80 % de los niños y diarrea persistente en el 20 %. De los individuos con diarrea, el 40 % fue positivo para enteropatógenos; los más diagnosticados fueron rotavirus (13,3 %) y Giardia duodenalis (11,1 %). Entre los pacientes infectados, la sangre oculta fue más evidente en aquellos portadores de bacterias patógenas (40 %) o enterovirus (40%), mientras que la esteatorrea se observó en infecciones por el protozoo G. duodenalis (35,7 %). Los niños con diarrea excretaron significativamente más lípidos en las heces que aquellos sin diarrea, según lo determinado por los métodos de esteatocrito tradicional (p<0,0003) y esteatocrito ácido (p<0,0001). Conclusiones. La diarrea infantil puede provocar deficiencias graves de nutrientes. La esteatorrea es distintiva de la malabsorción intestinal y puede detectarse mediante la estimación del esteatocrito ácido. Esta prueba podría utilizarse de forma rutinaria como una herramienta de laboratorio para la evaluación semicuantitativa de la malabsorción de grasas en niños con diarrea.
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  • 文章类型: Journal Article
    背景:早期和充分治疗血流感染可降低患者的发病率和死亡率。目的是开发一种可诱导染色体AmpC肠杆菌快速抗生素敏感性测试(RAST)的初步方法。
    方法:RAST直接对49种肠杆菌的血培养物进行诱导染色体AmpC。在孵育4、6和8h读取结果。商业肉汤微量稀释被认为是参考方法。评估了10种抗生素的磁盘。
    结果:4小时可读测试的比例为85%。所有RAST可以在6和8小时读取。对于大多数抗生素来说,建立暂定断点并定义技术不确定度区域后,4、6和8h的S或R结果大于80%。
    结论:这种初步方法似乎具有实际用途,尽管它应该扩展到调整断点并按物种区分它们。
    BACKGROUND: Early and adequate treatment of bloodstream infections decreases patient morbidity and mortality. The objective is to develop a preliminary method for rapid antibiotic susceptibility testing (RAST) in enterobacteria with inducible chromosomal AmpC.
    METHODS: RAST was performed directly on spiked blood cultures of 49 enterobacteria with inducible chromosomal AmpC. Results were read at 4, 6 and 8h of incubation. Commercial broth microdilution was considered the reference method. Disks of 10 antibiotics were evaluated.
    RESULTS: The proportion of readable tests at 4h was 85%. All RAST could be read at 6 and 8h. For most antibiotics, the S or R result at 4, 6 and 8h was greater than 80% after tentative breakpoints were established and Area of Technical Uncertainty was defined.
    CONCLUSIONS: This preliminary method seems to be of practical use, although it should be extended to adjust the breakpoints and differentiate them by species.
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  • 文章类型: Journal Article
    大肠杆菌O157:H7(E.大肠杆菌O157:H7)和空肠弯曲杆菌(C.空肠)是致病微生物,可引起人类严重的临床症状,并与食用牛肉有关。根据智利法规,对肉类中的大肠杆菌O157:H7或空肠杆菌的特定监测不是强制性的。在这项研究中,我们分析了544个样本来检测这两种微生物,从Bio-Bío区两个屠宰场的272头牛尸体(平均280公斤)中获得,智利。在屠体淋浴后和通道通过冷室后进行取样。使用微生物和生化检测技术发现11个样品对大肠杆菌O157:H7(4.0%)呈阳性,并进行了多重PCR以检测fliC和rfbE基因。还发现六个样品(2.2%)的致病性基因stx1,stx2和eaeA呈阳性。使用微生物和生化检测技术发现22具尸体(8.0%)为空肠弯曲杆菌阳性,但没有发现带有mapA基因扩增的样本.
    Escherichia coli O157:H7 (E. coli O157:H7) and Campylobacter jejuni (C. jejuni) are pathogenic microorganisms that can cause severe clinical symptoms in humans and are associated with bovine meat consumption. Specific monitoring for E. coli O157: H7 or C. jejuni in meat is not mandatory under Chilean regulations. In this study, we analyzed 544 samples for the detection of both microorganisms, obtained from 272 bovine carcasses (280 kg average) at two slaughterhouses in the Bio-Bío District, Chile. Sampling was carried out at post-shower of carcasses and after channel passage through the cold chamber. Eleven samples were found to be positive for E. coli O157:H7 (4.0%) using microbiological and biochemical detection techniques and were subjected to a multiplex PCR to detect fliC and rfbE genes. Six samples (2.2%) were also found to be positive for the pathogenicity genes stx1, stx2, and eaeA. Twenty-two carcasses (8.0%) were found to be positive for C. jejuni using microbiological and biochemical detection techniques, but no sample with amplified mapA gene was found.
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  • 文章类型: Journal Article
    海鲜的消费对粮食安全至关重要,但是食品生产链上的不良卫生状况会导致微生物质量低下,对公众健康和海鲜质量构成重大风险。因此,这项研究旨在评估Vitória地区69个非法销售的虾和贻贝样本中大肠杆菌的微生物质量和抗菌敏感性,巴西。这些食物表现出较差的微生物质量,由于高计数的嗜温,嗜冷,和肠杆菌微生物。虽然这个问题在这个领域很普遍,与贻贝相比,虾样本显示出更高的微生物数量,与冷冻贻贝相比,新鲜贻贝的肠杆菌数量增加。在10个大肠杆菌分离物中,没有携带基因blaCTX-M-1、blaCTX-M-2、blaCTX-M-3、blaCTX-M-15、mcr-1、mcr-2、mcr-3、mcr-4和tet,与抗生素耐药性有关。在任何分离株中均未观察到对四环素和磷霉素的表型抗性,而只有20%的人对环丙沙星有耐药性。关于氨苄西林和阿莫西林与克拉维酸,60%的分离株耐药,10%显示中等易感性,30%是敏感的。一种分离物被认为同时对β-内酰胺类和喹诺酮类具有抗性,没有一个被保存为ESBL生产者。这些发现强调了在该地区食用不适当的海鲜对当地公共卫生的固有风险。
    The consumption of seafood is crucial for food security, but poor hygiene along the food production chain can result in low microbiological quality, posing significant risks for public health and seafood quality. Thus, this study aimed to assess the microbiological quality and antimicrobial sensitivity of E. coli from 69 samples of illegally marketed shrimp and mussels in the Vitória Region, Brazil. These foods exhibited poor microbiological quality due to high counts of mesophilic, psychrotrophic, and enterobacteria microorganisms. While this issue is widespread in this area, shrimp samples displayed higher microbial counts compared to mussels, and fresh mussels had elevated counts of enterobacteria compared to frozen ones. Among the 10 E. coli isolates, none carried the genes blaCTX-M-1, blaCTX-M-2, blaCTX-M-3, blaCTX-M-15, mcr-1, mcr-2, mcr-3, mcr-4, and tet, associated with antibiotic resistance. Phenotypical resistance to tetracycline and fosfomycin was not observed in any isolate, while only 20% demonstrated resistance to ciprofloxacin. Regarding ampicillin and amoxicillin with clavulanic acid, 60% of isolates were resistant, 10% showed intermediate susceptibility, and 30% were sensitive. One isolate was considered simultaneously resistant to β-lactams and quinolones, and none were conserved as ESBL producers. These findings highlight the inherent risks to local public health that arise from consuming improperly prepared seafood in this area.
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  • 文章类型: Journal Article
    弗氏柠檬酸杆菌的抗生素耐药性是一个公共卫生问题。这项研究评估了从最初与沙门氏菌爆发有关的住院患者的粪便中分离出的弗氏梭菌的封闭基因组。通过全基因组测序确定分离物的确认。使用具有Flongle流动池的MinION进行纳米孔测序。使用SPAdes和Uniculer进行组装产生了由NCBI原核基因组注释管道注释的封闭基因组。基因组分析采用MLST2.0、ResFinder4.1、PlasmidFinder2.1和VF分析仪。系统发育比较利用CFSAN-SNP管道和GARLI。按照CLSI标准通过肉汤微量稀释测试抗微生物药物敏感性。计算机模拟分析中的多位点序列类型将弗氏梭菌指定为序列类型64,并且在抗性研究中检测到blaCMY-41基因。对抗生素的敏感性,使用Sensittre®平板测定,显示出对氨曲南的抗性,粘菌素,头孢西丁,阿莫西林/克拉维酸,硫化异恶唑,氨苄青霉素,和链霉素.FreundiiC.CFSAN077772与公开可用的C.freundii基因组的遗传相关性揭示了与2009年从坦桑尼亚的人类粪便中分离出的C.freundiiSRR1186659的密切关系。此外,C.freundiiCFSAN077772与丹麦分离的C.freundii临床菌株嵌套在同一簇中,墨西哥,缅甸,加拿大,这表明洲际传播是成功的。
    Antibiotic resistance in Citrobacter freundii is a public health concern. This study evaluated the closed genome of a C. freundii isolated from the stool of a hospitalized patient initially related to a Salmonella outbreak. Confirmation of the isolate was determined by whole-genome sequencing. Nanopore sequencing was performed using a MinION with a Flongle flow cell. Assembly using SPAdes and Unicycler yielded a closed genome annotated by National Center for Biotechnology Information Prokaryotic Genome Annotation Pipeline. Genomic analyses employed MLST 2.0, ResFinder4.1, PlasmidFinder2.1, and VFanalyzer. Phylogenetic comparison utilized the Center for Food Safety and Applied Nutrition (CFSAN)-single nucleotide polymorphism pipeline and Genetic Algorithm for Rapid Likelihood Inference. Antimicrobial susceptibility was tested by broth microdilution following Clinical and Laboratory Standards Institute criteria. Multi-locus sequence type in silico analysis assigned the C. freundii as sequence type 64 and the blaCMY-41 gene was detected in resistome investigation. The susceptibility to antibiotics, determined using Sensititre® plates, revealed resistance to aztreonam, colistin, cefoxitin, amoxicillin/clavulanic acid, sulfisoxazole, ampicillin, and streptomycin. The genetic relatedness of the C. freundii CFSAN077772 with publicly available C. freundii genomes revealed a close relationship to a C. freundii SRR1186659, isolated in 2009 from human stool in Tanzania. In addition, C. freundii CFSAN077772 is nested in the same cluster with C. freundii clinical strains isolated in Denmark, Mexico, Myanmar, and Canada, suggesting a successful intercontinental spread.
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