1.骨骼肌是鸡胴体的重要组成部分。在鸡中,肌肉纤维的数量在胚胎时期是固定的,胚胎期的肌肉发育决定了孵化后的肌肉发育潜能。北京-优(BY)和康沃尔(CN)鸡表现出完全不同的生长速度和体型,本研究使用两个品种来探讨lncRNAs在鸡不同胚胎时期肌肉发育中的作用。在BY和CN鸡的胸肌组织中进行了lncRNAs和mRNAs的系统分析,在胚胎第11天(ED11),13(ED13),15(ED15),17(ED17),和使用RNA-seq的1天大(D1)。在五个阶段中总共鉴定了4,104种差异表达的转录本(DES),包括2,359个lncRNAs和1,745个mRNAs。在ED17(1,658个lncRNAs和1,016个mRNAs)两个品种之间的DET数量远高于所有其他阶段的DET总数(692个lncRNAs和729个mRNAs),表明这两个品种在ED17.4基因调控上表现出最大的差异。在五个时期内对所有差异表达的lncRNA和mRNA进行相关性分析。四十三,预测了与鸡肌肉发育相关的lncRNA-mRNA的顺式相互作用对。验证了四对的表达,结果表明,与BY相比,MSCRG.12395.2-FGFBP2和MSCRG.18590.6-FMOD在CN中的ED11显著上调,可能是胚胎肌肉发育的重要候选基因。
1. Skeletal muscle is an important component of chicken carcass. In chickens, the number of muscle fibres is fixed during the
embryonic period, and muscle development during the
embryonic period determines the muscle development potential after hatching.2. Beijing-You (BY) and Cornish (CN) chickens show completely different growth rates and body types, and two breeds were used in this study to explore the role of lncRNAs in muscle development during different chicken
embryonic periods. A systematic analysis of lncRNAs and mRNAs were conducted in the pectoral muscle tissues of BY and CN chickens at
embryonic days 11 (ED11), 13 (ED13), 15 (ED15), 17 (ED17), and 1-day-old (D1) using RNA-seq. A total of 4,104 differentially expressed transcripts (DETs) were identified among the five stages, including 2,359 lncRNAs and 1,745 mRNAs.3. The number of DETs between the two breeds at ED17 (1,658 lncRNAs and 1,016 mRNAs) was much higher than the total number of DET at all the other stages (692 lncRNAs and 729 mRNAs), indicating that the two breeds show the largest difference in gene regulation at ED17.4. Correlation analysis was performed for all differentially expressed lncRNAs and mRNAs during the five periods. Forty-three, cis interaction pairs of lncRNA-mRNA related to chicken muscle development were predicted. The expression of four pairs was verified, and the results showed MSTRG.12395.2-FGFBP2 and MSTRG.18590.6-FMOD were significantly up-regulated in CN at ED11 compared to BY and might be important candidate genes for
embryonic muscle development.