electroactive microorganisms

电活性微生物
  • 文章类型: Journal Article
    电活性微生物(EAM)通过促进细胞外电子转移在生物地球化学循环中起着至关重要的作用。它们对污染和水质差的河流沉积物表现出显著的适应性,为河流生态系统的可持续性做出了重要贡献。然而,EAM的分布和多样性仍然知之甚少。在这项研究中,采用16SrRNA基因高通量测序和实时荧光定量PCR技术,对中国南方珠江三角洲8条河流采集的160份样品进行了EAMs评估。结果表明,污染沉积物中的专门EAM群落表现出对水质和沉积物深度的响应。与干净的沉积物相比,受污染的沉积物显示EAMs群落(59属)的相对丰度增加4.5%,Geobacter和电缆细菌的丰度分别高45倍和17倍。此外,电缆细菌的丰度随着污染沉积物中沉积物深度的增加而降低,而L.variansGY32的丰度表现出相反的趋势。最后,Geobacter的丰度,电缆细菌,和L.variansGY32与所有样品中丝状微生物(FM)的丰度呈正相关,在污染的沉积物中具有更强的相互作用。这些发现表明,EAM对污染环境表现出更高的敏感性,特别是在属(种)水平,并表现出对高水平的酸挥发性硫化物的条件的适应性强,低溶解氧,硝酸盐氮升高。因此,可以操纵环境因素以优化EAM的生长和效率,以用于环境工程和自然恢复应用。
    Electroactive microorganisms (EAMs) play a vital role in biogeochemical cycles by facilitating extracellular electron transfer. They demonstrate remarkable adaptability to river sediments that are characterized by pollution and poor water quality, significantly contributing to the sustainability of river ecosystems. However, the distribution and diversity of EAMs remain poorly understood. In this study, 16S rRNA gene high-throughput sequencing and real-time fluorescence quantitative PCR were used to assess EAMs in 160 samples collected from eight rivers within the Pearl River Delta of Southern China. The results indicated that specialized EAMs communities in polluted sediments exhibited variations in response to water quality and sediment depth. Compared to clean sediment, polluted sediments showed a 4.5% increase in the relative abundances of EAMs communities (59 genera), with 45- and 17-times higher abundances of Geobacter and cable bacteria. Additionally, the abundance of cable bacteria decreased with increasing sediment depth in polluted sediments, while the abundance of L. varians GY32 exhibited an opposite trend. Finally, the abundances of Geobacter, cable bacteria, and L. varians GY32 were positively correlated with the abundance of filamentous microorganisms (FMs) across all samples, with stronger interactions in polluted sediments. These findings suggest that EAMs demonstrate heightened sensitivity to polluted environments, particularly at the genus (species) level, and exhibit strong adaptability to conditions characterized by high levels of acid volatile sulfide, low dissolved oxygen, and elevated nitrate nitrogen. Therefore, environmental factors could be manipulated to optimize the growth and efficiency of EAMs for environmental engineering and natural restoration applications.
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  • 文章类型: Journal Article
    电生物修复是处理有机污染物的最具创新性的学科之一,它基于电活性细菌与导电材料交换电子的能力。电活性生物过滤器已被证明是有效的处理城市污水与低足迹;然而,它们的应用可以扩展为处理工业废水含有显著浓度(2.4%vol)的商业表面活性剂(含有月桂基硫酸盐,月桂基醚硫酸盐,椰油基丙基甜菜碱,和十二烷基苯磺酸盐,除其他外)。在所有测试条件下,我们的电活性生物过滤器的性能优于传统的由砾石制成的惰性生物过滤器。去除率高达4.5kgCOD/m3bed·day,有机负载率高达9kgCOD/m3·d,而不会显着影响去除效率。生物量的积累使电活性生物过滤器中的可用床体积减少了39%,而砾石生物滤池减少了80%。关于微生物群落,厌氧和电活性细菌在电活性生物滤池中占总人口的很大比例。假单胞菌属为优势属,而Cupriavidus,Shewanella,柠檬酸杆菌,Desulfovibrio,和杆菌是以相关比例发现的潜在电活性菌株。微生物群落的组成可能是了解高去除率如何与有限的生物质生产共存的关键。使电活性生物过滤器成为克服经典生物过滤器局限性的有前途的策略。
    Electrobioremediation is one of the most innovative disciplines for treating organic pollutants and it is based on the ability of electroactive bacteria to exchange electrons with electroconductive materials. Electroactive biofilters have been demonstrated to be efficient for treating urban wastewater with a low footprint; however, their application can be expanded for treating industrial wastewater containing significant concentrations (2.4 %vol) of commercial surfactants (containing lauryl sulfate, lauryl ether sulfate, cocamydopropyl betaine, and dodecylbenzene sulfonate, among others). Our electroactive biofilter outperformed a conventional inert biofilter made of gravel for all tested conditions, reaching removal rates as high as 4.5 kg COD/m3bed·day and withstood Organic Loading Rates as high as 9 Kg COD/m3·d without significantly affecting removal efficiency. The biomass accumulation reduced available bed volume in the electroactive biofilter just by 39 %, while the gravel biofilter decreased by 80 %. Regarding microbial communities, anaerobic and electroactive bacteria represented a substantial proportion of the total population in the electroactive biofilter. Pseudomonas was the dominant genus, while Cupriavidus, Shewanella, Citrobacter, Desulfovibrio, and Arcobacter were potential electroactive strains found in relevant proportions. The microbial community\'s composition might be the key to understanding how high removal rates can coexist with limited biomass production, making electroactive biofilters a promising strategy to overcome classical biofilter limitations.
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  • 文章类型: Journal Article
    通过将电活性基因整合到工程传感微生物中,关于要测量的物体的信息可以转换为电信号的输出,省略了传统传感策略中转换电信号输出的过程,简化了生物传感器开发的步骤。通过利用合成生物学方法,我们不仅可以通过使用逻辑门操作和整合来自其他生物成分的基因来创建新的遗传电路,解决生命系统中的生物传感问题并提高传感器性能,而且还将各种类型的遗传电路转换成电信号,拓宽了生物传感器的应用范围。这里,我们描述了如何用电活性基因对微生物进行基因工程改造和制造电化学微生物生物传感器的例子。
    By integrating electroactive genes into engineered sensing microorganisms, information about the object to be measured can be converted into the output of an electrical signal, omitting the process of converting the output of an electrical signal in conventional sensing strategies and simplifying the steps of biosensor development. By utilizing synthetic biology methods, we can not only create novel genetic circuits by using logic gate operations and integrating genes from other biological components, solving biosensing issues in living systems and enhancing sensor performance, but also convert various types of genetic circuits into electrical signals, broadening the application range of biosensors. Here, we describe an example of how to genetically engineer microorganisms with electroactive genes and the fabrication of an electrochemical microbial biosensor.
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  • 文章类型: Journal Article
    微生物是全球生物地球化学硫循环的关键参与者。其中,由于它们的电活动和进行细胞外电子转移的能力,有些引起了特别的关注。越来越多的研究强调了它们广泛的系统发育和代谢多样性,揭示了它们在生态过程中的关键作用。在这次审查中,我们深入研究了硫酸盐还原细菌和厌氧烷烃氧化古细菌之间的电子转移过程,促进互养群落内的生长。此外,我们回顾了多细胞丝状硫氧化细菌中的长距离电子转移和潜在的细胞外电子转移现象。这些细菌,具有广阔的应用前景和生态意义,在各种生态过程中起着举足轻重的作用。随后,我们讨论了菌毛/细胞色素对电子转移的重要作用,并提出了探索和研究电活性微生物的前沿方法。这篇综述提供了参与生物地球化学硫循环的电活性微生物的全面概述。通过研究它们的电子转移机制,以及潜在的生态和应用影响,我们提供了对微生物硫代谢的新见解,从而推进可持续生物电子材料和生物修复技术的开发应用。
    Microorganisms are key players in the global biogeochemical sulfur cycle. Among them, some have garnered particular attention due to their electrical activity and ability to perform extracellular electron transfer. A growing body of research has highlighted their extensive phylogenetic and metabolic diversity, revealing their crucial roles in ecological processes. In this review, we delve into the electron transfer process between sulfate-reducing bacteria and anaerobic alkane-oxidizing archaea, which facilitates growth within syntrophic communities. Furthermore, we review the phenomenon of long-distance electron transfer and potential extracellular electron transfer in multicellular filamentous sulfur-oxidizing bacteria. These bacteria, with their vast application prospects and ecological significance, play a pivotal role in various ecological processes. Subsequently, we discuss the important role of the pili/cytochrome for electron transfer and presented cutting-edge approaches for exploring and studying electroactive microorganisms. This review provides a comprehensive overview of electroactive microorganisms participating in the biogeochemical sulfur cycle. By examining their electron transfer mechanisms, and the potential ecological and applied implications, we offer novel insights into microbial sulfur metabolism, thereby advancing applications in the development of sustainable bioelectronics materials and bioremediation technologies.
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  • 文章类型: Journal Article
    生物处理是去除工业废水中有机污染物的核心过程。然而,工业废水往往含有大量有毒有害污染物,可以抑制处理系统中微生物的活性,沉淀出水水质恶化,并不时威胁水生态安全。在现有的大多数厌氧生物处理工艺中,对微生物的毒性作用是根据生化反应的最终产物的量来确定的,评估结果相对缺乏。当微生物接触有毒物质时,生物代谢活性的变化先于反应产物的积累。作为敏感单位,电活性微生物可以产生电信号,可以直接反映毒性水平的变化。电活性微生物在废水毒性监测中的应用前景广阔。需要进一步注意考虑适当的评价指标,环境对测试结果的影响,机制,和其他方面。因此,本文对上述方面的文献进行了综述,以期为电活性微生物在毒物监测中的实际应用提供研究基础。
    A biological treatment is the core process for removing organic pollutants from industrial wastewater. However, industrial wastewater often contains large amounts of toxic and harmful pollutants, which can inhibit the activity of microorganisms in a treatment system, precipitate the deterioration of effluent quality, and threaten water ecological security from time to time. In most of the existing anaerobic biological treatment processes, toxic effects on microorganisms are determined according to the amounts of end-products of the biochemical reactions, and the evaluation results are relatively lacking. When microorganisms contact toxic substances, changes in biological metabolic activity precede the accumulation of reaction products. As sensitive units, electroactive microorganisms can generate electrical signals, a change in which can directly reflect the toxicity level. The applications of electroactive microorganisms for the toxicity monitoring of wastewater are very promising. Further attention needs to be paid to considering the appropriate evaluation index, the influence of the environment on test results, mechanisms, and other aspects. Therefore, we reviewed the literature regarding the above aspects in order to provide a research foundation for the practical application of electroactive microorganisms in toxicant monitoring.
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  • 文章类型: Journal Article
    世界范围内硝酸盐污染的地下水问题需要切实可行的解决方案,和电生物修复提供了一个有前途的和可持续的治疗。虽然它显示了潜在的好处,治疗率还有提高的空间,这对其进一步有效实施至关重要。在这个领域,电化学表征是为优化生物电化学反应器提供基础的有价值的工具,但在固定床反应器中应用它是具有挑战性的,由于其高的固有电阻。为了克服这些挑战,本研究采用简便快捷的eClamp方法筛选了不同的工艺参数及其对粒状石墨组成的固定床反硝化生物阴极性能的影响。颗粒在受控条件下进行非原位提取和研究,同时改变关键操作参数(例如pH,温度,和硝酸盐浓度)。在研究的生物阴极中,与反硝化相关的胞外电子转移被确定为主要的限制步骤,其形式电位为-0.225±0.007Vvs.Ag/AgClsat。KCl在pH7和25°C下通过改变硝酸盐的浓度,结果表明,生物阴极对硝酸盐具有很强的亲和力(KMapp为0.7±0.2mgN-NO3-L-1)。在pH为6和温度为35°C时观察到最大反硝化速率。此外,调查结果强调了2-/1H+转移,这对生物电化学反硝化剂的能量代谢具有相当大的意义。这些汇总的结果为了解反硝化生物阴极提供了有价值的见解,并能够改善和预测其性能。
    The worldwide issue of nitrate-contaminated groundwater requires practical solutions, and electro-bioremediation offers a promising and sustainable treatment. While it has shown potential benefits, there is room for improvement in treatment rates, which is crucial for its further and effective implementation. In this field, electrochemical characterisation is a valuable tool for providing the foundation for optimising bioelectrochemical reactors, but applying it in fixed-bed reactors is challenging due to its high intrinsic electrical resistance. To overcome these challenges, this study employed the easy and swift eClamp methodology to screen different process parameters and their influence on the performance of fixed-bed denitrifying biocathodes composed of granular graphite. Granules were extracted and studied ex-situ under controlled conditions while varying key operational parameters (such as pH, temperature, and nitrate concentration). In the studied biocathode, the extracellular electron transfer associated with denitrification was identified as the primary limiting step with a formal potential of -0.225 ± 0.007 V vs. Ag/AgCl sat. KCl at pH 7 and 25 °C. By varying the nitrate concentration, it was revealed that the biocathode exhibits a strong affinity for nitrate (KMapp of 0.7 ± 0.2 mg N-NO3- L-1). The maximum denitrification rate was observed at a pH of 6 and a temperature of 35 °C. Furthermore, the findings highlight a 2e-/1H+ transfer, which holds considerable implications for the energy metabolism of bioelectrochemical denitrifiers. These compiled results provide valuable insights into the understanding of denitrifying biocathodes and enable the improvement and prediction of their performance.
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  • 文章类型: Journal Article
    现在人们认为电活性微生物在自然界中是丰富的,尽管许多被归类为“弱电源”,但不适合合理的发电。我们报告了使用自然环境中的弱电原,水质实时监测。使用各种农药作为模型化学污染物,在所有测试浓度(0.05-2ppm)下,生物电化学传感器在几分钟内都具有响应性,并且可以长期重复使用。由于自然环境中普遍存在电活性微生物,这样的传感器可以与传统的监测方法协同工作,并且可以用于检测新出现的污染物。
    Electroactive microorganisms are now understood to be abundant across nature, though many are categorized as \"weak electricigens\" not suitable for reasonable power generation. We report the use of weak electricigens from the natural environment for rapid, real-time water quality monitoring. Using a variety of pesticides as model chemical pollutants, the bioelectrochemical sensor was responsive within minutes at all concentrations tested (0.05-2 ppm) and could be repreatedly used long-term. Due to the prevalence of electroactive microorganisms in the natural environment, such sensors could work in tandem with conventional monitoring methods and may be useful for detecting emerging contaminants.
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  • 文章类型: Journal Article
    双向细胞外电子转移(EET)对于在缺氧环境中维持不溶性电子受体或供体的微生物代谢至关重要。研究具有双向EET能力的微生物需要了解细胞-细胞和微生物-矿物质的相互作用及其在矿物质循环中的作用,除了利用它们的能量产生和转化,生物传感,和生物电池应用。这里,我们报告了在卤代碱性条件下通过双向EET通过卤代亲碱性地碱性细菌的铁循环。它以0.75±0.08mM/mgprotein/d的速率有效地将Fe3氧化物(Fe2O3)还原为Fe0,并通过向内的EET以0.24±0.03mM/mgprotein/d的速率将Fe0氧化为Fe3还原富马酸盐。生物电化学培养证实了其向外和向内的EET能力。通过将乙酸盐氧化通过向外的EET与阳极还原连接,并通过向内的EET从阴极吸引电子(〜2.5±0.3µA/cm2)来还原富马酸盐,从而产生895±23µA/cm2的电流。G.halelectricus生物膜的循环伏安图显示氧化还原部分具有不同的形式电位,提示不同膜成分参与双向EET。无细胞废培养基的循环伏安法和GC-MS分析显示缺乏可溶性氧化还原介体,表明G.halelecctricus在实现双向EET中的直接电子转移。通过报道第一个能够氧化和还原不溶性Fe0和Fe3氧化物的卤代嗜碱性细菌,分别,这项研究促进了对极端微生物通过双向EET呼吸不溶性电子受体或供体的代谢能力的有限理解,并在几乎没有研究的卤碱性环境中引入了G.halelectricus在铁循环中的可能作用。IMPORTANCE双向胞外电子转移(EET)似乎是缺氧环境中可溶性电子供体和受体分子耗尽的关键微生物代谢过程。尽管它是一种重要的生态和应用的微生物现象,已经报道了一些微生物,主要来自非极端环境。此外,研究了基于直接电子转移的双向EET,用于极少数在工程系统中具有电极的微生物,并且在缺氧条件下几乎不具有天然不溶性电子受体和供体分子。这项研究促进了对能够双向EET的极端微生物类群的理解,及其在高盐碱环境中几乎没有研究过的Fe循环中的作用。它还为了解G.halelectricus的双向EET中涉及的膜成分提供了研究机会。G.halelectricus对Fe3氧化物的高还原活性表明,在中性-碱性pH条件下,它可能用作厌氧生物浸出过程中的生物催化剂。
    Bidirectional extracellular electron transfer (EET) is crucial to upholding microbial metabolism with insoluble electron acceptors or donors in anoxic environments. Investigating bidirectional EET-capable microorganisms is desired to understand the cell-cell and microbe-mineral interactions and their role in mineral cycling besides leveraging their energy generation and conversion, biosensing, and bio-battery applications. Here, we report on iron cycling by haloalkaliphilic Geoalkalibacter halelectricus via bidirectional EET under haloalkaline conditions. It efficiently reduces Fe3+ oxide (Fe2O3) to Fe0 at a 0.75 ± 0.08 mM/mgprotein/d rate linked to acetate oxidation via outward EET and oxidizes Fe0 to Fe3+ at a 0.24 ± 0.03 mM/mgprotein/d rate via inward EET to reduce fumarate. Bioelectrochemical cultivation confirmed its outward and inward EET capabilities. It produced 895 ± 23 µA/cm2 current by linking acetate oxidation to anode reduction via outward EET and reduced fumarate by drawing electrons from the cathode (‒2.5 ± 0.3 µA/cm2) via inward EET. The cyclic voltammograms of G. halelectricus biofilms revealed redox moieties with different formal potentials, suggesting the involvement of different membrane components in bidirectional EET. The cyclic voltammetry and GC-MS analysis of the cell-free spent medium revealed the lack of soluble redox mediators, suggesting direct electron transfer by G. halelecctricus in achieving bidirectional EET. By reporting on the first haloalkaliphilic bacterium capable of oxidizing and reducing insoluble Fe0 and Fe3+ oxide, respectively, this study advances the limited understanding of the metabolic capabilities of extremophiles to respire on insoluble electron acceptors or donors via bidirectional EET and invokes the possible role of G. halelectricus in iron cycling in barely studied haloalkaline environments. IMPORTANCE Bidirectional extracellular electron transfer (EET) appears to be a key microbial metabolic process in anoxic environments that are depleted in soluble electron donor and acceptor molecules. Though it is an ecologically important and applied microbial phenomenon, it has been reported with a few microorganisms, mostly from nonextreme environments. Moreover, direct electron transfer-based bidirectional EET is studied for very few microorganisms with electrodes in engineered systems and barely with the natural insoluble electron acceptor and donor molecules in anoxic conditions. This study advances the understanding of extremophilic microbial taxa capable of bidirectional EET and its role in barely investigated Fe cycling in highly saline-alkaline environments. It also offers research opportunities for understanding the membrane components involved in the bidirectional EET of G. halelectricus. The high rate of Fe3+ oxide reduction activity by G. halelectricus suggests its possible use as a biocatalyst in the anaerobic iron bioleaching process under neutral-alkaline pH conditions.
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  • 文章类型: Journal Article
    对电活性微生物(EAM)的研究通常集中在它们的生理学和细胞外电子转移的潜在机制上,或者集中在它们在微生物电化学技术(MET)中的应用上。对与EAM的生长和活动相关的能量转换的热力学理解仅受到很少的关注。在这项研究中,我们旨在通过监测可能富含Geobacter的醋酸盐饲喂生物膜的生长来确定生物质产量,从而证明EAM的假设受限的能量收获。使用光学相干层析成像,在三个阳极电位和四个乙酸浓度。使用EAM的精细热力学模型同时模拟实验。在生物量产量与阳极电位或乙酸浓度之间均未观察到明显的相关性,尽管统计意义有限,主要是由于观察到的实验差异。基于乙酸盐消耗的实验生物量产量(YX/ac=37±9mgCOD生物量gCODac-1)高于通过建模估计的,表明现有生长模型预测EAM产量的局限性。相比之下,基于分解代谢能量收获的模拟生物量产量高于实验数据的生物量产量(YX/cat=25.9±6.8mgCOD生物量kJ-1),支持EAM的有限能量收获,并表明不考虑能量汇的作用。这需要一个调整后的EAM增长模型,包括,例如,微生物电化学珀尔帖热,以提高对其能量代谢的理解和建模。此外,报道的生物量产量是设计策略的重要参数,这些策略用于影响EAM与其他微生物之间的相互作用,并允许对MET进行更现实的可行性评估。
    Research on electroactive microorganisms (EAM) often focuses either on their physiology and the underlying mechanisms of extracellular electron transfer or on their application in microbial electrochemical technologies (MET). Thermodynamic understanding of energy conversions related to growth and activity of EAM has received only a little attention. In this study, we aimed to prove the hypothesized restricted energy harvest of EAM by determining biomass yields by monitoring growth of acetate-fed biofilms presumably enriched in Geobacter, using optical coherence tomography, at three anode potentials and four acetate concentrations. Experiments were concurrently simulated using a refined thermodynamic model for EAM. Neither clear correlations were observed between biomass yield and anode potential nor acetate concentration, albeit the statistical significances are limited, mainly due to the observed experimental variances. The experimental biomass yield based on acetate consumption (YX/ac = 37 ± 9 mgCODbiomass gCODac-1) was higher than estimated by modeling, indicating limitations of existing growth models to predict yields of EAM. In contrast, the modeled biomass yield based on catabolic energy harvest was higher than the biomass yield from experimental data (YX/cat = 25.9 ± 6.8 mgCODbiomass kJ-1), supporting restricted energy harvest of EAM and indicating a role of not considered energy sinks. This calls for an adjusted growth model for EAM, including, e.g., the microbial electrochemical Peltier heat to improve the understanding and modeling of their energy metabolism. Furthermore, the reported biomass yields are important parameters to design strategies for influencing the interactions between EAM and other microorganisms and allowing more realistic feasibility assessments of MET.
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  • 文章类型: Journal Article
    阳极的细菌负载能力和生物相容性差导致微生物燃料电池(MFCs)的产电性能弱。灵感来自海带,我们开发了一种基于海藻酸钠(SA)的双层水凝胶生物阳极。封装的Fe3O4和电活性微生物(EAMs)的内部水凝胶层用作生物电化学催化层。通过用聚乙烯醇(PVA)交联SA形成的外部水凝胶层用作保护层。基于Fe3O4形成的内部水凝胶的3D多孔结构促进了电活性细菌定植和电子转移,而高的结构韧性,外部高度交联的水凝胶的耐盐性和抗菌性能用于保护催化层用于稳定的电力生产。当使用高盐垃圾渗滤液作为营养素时,双层水凝胶生物阳极PVA@SA和Fe3O4/EAMs@SA带来了1.17V的惊人开路电压(OCV)和781mV的工作电压。
    The poor bacterial loading capacity and biocompatibility of the anode lead to weak electricity production performance of microbial fuel cells (MFCs). Inspired by kelp, we developed a double-layer hydrogel bioanode based on sodium alginate (SA). The inner hydrogel layer of encapsulated Fe3O4 and electroactive microorganisms (EAMs) was used as the bioelectrochemical catalytic layer. The outer hydrogel layer formed by cross-linking SA with polyvinyl alcohol (PVA) was used as the protective layer. The 3D porous structure of the inner hydrogel formed based on Fe3O4 facilitated the electroactive bacteria colonization and electron transfer, while the high structural toughness, salt-resistance and antibacterial properties of the outer highly cross-linked hydrogel served to protect the catalytic layer for stable electricity production. When high-salt waste leachate was used as the nutrient, the amazing open-circuit voltage (OCV) of 1.17 V and the operating voltage of 781 mV were brought by the double-layer hydrogel bioanode PVA@SA&Fe3O4/EAMs@SA.
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