elasticity

弹性
  • 文章类型: Journal Article
    双链(ds)DNA和RNA的弹性,这对它们的生物学功能和在材料科学中的应用至关重要,可以通过溶液条件如离子和温度显著调节。然而,仍然缺乏对溶剂在dsRNA和dsDNA弹性中的作用进行比较的全面了解。在这项工作中,我们通过磁镊子和全原子分子动力学模拟研究了乙醇溶剂对dsRNA和dsDNA弹性的影响。我们发现dsRNA和dsDNA的弯曲持续长度和轮廓长度随着乙醇浓度的增加而单调降低。此外,乙醇的添加削弱了dsRNA的正扭曲-拉伸偶联,同时促进dsDNA的负扭曲-拉伸偶联。反直觉,乙醇的较低的介电环境导致抗衡离子的显着重新分布和增强的离子中和,压倒了沿着dsRNA/dsDNA增强的排斥,最终导致dsRNA和dsDNA的弯曲软化。此外,对于dsRNA,乙醇会在主要凹槽上产生轻微的离子夹紧,这削弱了主沟介导的扭曲-拉伸耦合,而对于dsDNA,由于增强的离子结合,乙醇促进了拉伸-半径相关性,因此增强了螺旋半径介导的扭曲-拉伸耦合。
    The elasticities of double-stranded (ds) DNA and RNA, which are critical to their biological functions and applications in materials science, can be significantly modulated by solution conditions such as ions and temperature. However, there is still a lack of a comprehensive understanding of the role of solvents in the elasticities of dsRNA and dsDNA in a comparative way. In this work, we explored the effect of ethanol solvent on the elasticities of dsRNA and dsDNA by magnetic tweezers and all-atom molecular dynamics simulations. We found that the bending persistence lengths and contour lengths of dsRNA and dsDNA decrease monotonically with the increase in ethanol concentration. Furthermore, the addition of ethanol weakens the positive twist-stretch coupling of dsRNA, while promotes the negative twist-stretch coupling of dsDNA. Counter-intuitively, the lower dielectric environment of ethanol causes a significant re-distribution of counterions and enhanced ion neutralization, which overwhelms the enhanced repulsion along dsRNA/dsDNA, ultimately leading to the softening in bending for dsRNA and dsDNA. Moreover, for dsRNA, ethanol causes slight ion-clamping across the major groove, which weakens the major groove-mediated twist-stretch coupling, while for dsDNA, ethanol promotes the stretch-radius correlation due to enhanced ion binding and consequently enhances the helical radius-mediated twist-stretch coupling.
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  • 文章类型: Journal Article
    近年来,癌症免疫疗法已成为一种有前途的癌症治疗方法。纳米载体的物理和化学性质是调节肿瘤微环境(TME)中抗原呈递细胞(APC)免疫激活的关键因素。在这里,我们广泛研究了具有不同弹性的脂质体纳米颗粒(Lipo-NPs)的行为,重点关注它们与免疫细胞的相互作用及其从肿瘤到肿瘤引流淋巴结(tdLNs)的转运机制。成功制备具有不同弹性性质的Lipo-NP,观察到他们的不同行为,关于免疫细胞相互作用。软脂-NP表现出对细胞膜的亲和力,而那些具有中等弹性的人通过膜融合促进了向巨噬细胞的货物递送。相反,硬Lipo-NP通过经典的细胞摄取途径进入巨噬细胞。此外,值得注意的是,较软的Lipo-NPs在体内表现出优于tdLNs的转运,归因于它们具有较低弹性的可变形性质。因此,带激动剂的中等弹性Lipo-NP(cGAMP),通过激活STING途径并增强到tdLN的转运,促进肿瘤浸润淋巴细胞(TIL)的大量浸润,在黑色素瘤小鼠模型中导致显著的抗肿瘤作用和延长的生存期。此外,这项研究强调了中等弹性Lipo-NP与免疫检查点阻断(ICB)治疗在预防肿瘤免疫逃避方面的潜在协同作用.这些发现有望指导癌症免疫治疗中的免疫靶向递送系统。特别是在针对tdLN靶向和根除tdLN内转移的疫苗设计中。
    Cancer immunotherapy has emerged as a promising approach to cancer treatment in recent years. The physical and chemical properties of nanocarriers are critical factors that regulate the immune activation of antigen-presenting cells (APCs) in the tumor microenvironment (TME). Herein, we extensively investigated the behavior of liposome nanoparticles (Lipo-NPs) with different elasticities, focusing on their interaction with immune cells and their transport mechanisms from tumors to tumor-draining lymph nodes (tdLNs). Successfully preparing Lipo-NPs with distinct elastic properties, their varied behaviors were observed, concerning immune cell interaction. Soft Lipo-NPs exhibited an affinity to cell membranes, while those with medium elasticity facilitated the cargo delivery to macrophages through membrane fusion. Conversely, hard Lipo-NPs enter macrophages via classical cellular uptake pathways. Additionally, it was noted that softer Lipo-NPs displayed superior transport to tdLNs in vivo, attributed to their deformable nature with lower elasticity. As a result, the medium elastic Lipo-NPs with agonists (cGAMP), by activating the STING pathway and enhancing transport to tdLNs, promoted abundant infiltration of tumor-infiltrating lymphocytes (TILs), leading to notable antitumor effects and extended survival in a melanoma mouse model. Furthermore, this study highlighted the potential synergistic effect of medium elasticity Lipo-NPs with immune checkpoint blockade (ICB) therapy in preventing tumor immune evasion. These findings hold promise for guiding immune-targeted delivery systems in cancer immunotherapy, particularly in vaccine design for tdLNs targeting and eradicating metastasis within tdLNs.
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  • 文章类型: Journal Article
    这项研究的目的是研究机械的修改,流变学,通过掺入其他成分(橄榄油或藜麦面粉)和鹰嘴豆糊和凝胶的感官特性,开发基于植物的替代品,满足消费者对健康的需求,自然,和令人愉快的食品。用不同量的鹰嘴豆粉(9%和12%,分别)。对于每个产品,生产具有不同油含量的第一组产品和具有藜麦面粉(添加或替换)的第二组产品。测量糊剂的粘弹性和凝胶的机械性能。使用排名测试对100名参与者进行了感官评估和偏好评估。研究发现在流变方面存在显著差异,机械,含有油和藜麦面粉后鹰嘴豆产品的感官特性。油的添加增加了粘度,降低了对糊状物粘弹性的弹性贡献,同时提高了凝胶的硬度和可塑性。它还增加了糊剂和凝胶两者的乳脂性和偏好性。用藜麦面粉代替鹰嘴豆导致粘性较低的糊状物和凝胶,硬度较低,可塑性较高。在感官特性方面,使用藜麦作为替代成分导致鹰嘴豆糊状物中的结块减少,糊状物和凝胶中的稠度降低和乳脂状增加,这对偏好有积极的影响。藜麦的添加增加了糊剂的粘度以及凝胶的硬度和硬度。它增加了糊剂和凝胶的稠度和乳脂状。藜麦面粉和/或橄榄油是鹰嘴豆基产品配方中的合适成分。它们有助于系统的结构,提供不同的纹理性能,提高接受度。
    The aim of this study was to investigate the modification of mechanical, rheological, and sensory properties of chickpea pastes and gels by incorporating other ingredients (olive oil or quinoa flour), to develop plant-based alternatives that meet consumer demands for healthy, natural, and enjoyable food products. The pastes and gels were made with different amounts of chickpea flour (9% and 12%, respectively). For each product, a first set of products with different oil content and a second set with quinoa flour (either added or replaced) were produced. The viscoelastic properties of the pastes and the mechanical properties of the gels were measured. Sensory evaluation and preference assessment were carried out with 100 participants using ranking tests. The study found remarkable differences in rheological, mechanical, and sensory properties of chickpea products upon the inclusion of oil and quinoa flour. The addition of oil increased the viscosity and decreased the elastic contribution to the viscoelasticity of the pastes, while it improved the firmness and plasticity in gels. It also increased the creaminess and preference of both pastes and gels. Replacing chickpea with quinoa flour resulted in less viscous pastes and gels with less firmness and more plasticity. In terms of sensory properties, the use of quinoa as a replacement ingredient resulted in less lumpiness in the chickpea paste and less consistency and more creaminess in both the pastes and gels, which had a positive effect on preference. The addition of quinoa increased the viscosity of pastes and the firmness and stiffness of gels. It increased the consistency and creaminess of both pastes and gels. Quinoa flour and/or olive oil are suitable ingredients in the formulation of chickpea-based products. They contribute to the structure of the system, providing different textural properties that improve acceptance.
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  • 文章类型: Journal Article
    研究不同细胞机械和物理特性对体外细胞的影响对于评估细胞活动(如分化)非常重要。扩散,和移民。评估由于基材粗糙度的变化而导致的细胞滞留在支架上的机械响应,基质弹性,流体流动,细胞的形状是研究的主要目标。在这种综合分析中,流体结构相互作用方法和子模型有限元技术的组合被用来预测在细胞和基底之间的界面处的各种细胞的力学响应。流体入口速度,基板粗糙度,和基底材料在该分析中变化。考虑了不同的细胞形状以及各种成分,例如细胞膜,细胞质,核,和细胞骨架。该分析显示了这些单个参数对细胞-基底界面处细胞的弹性应变和应变能密度的影响。结果突出表明,与基材弹性相比,基材粗糙度对界面处细胞的机械响应具有更显著的影响。然而,对于极软的基底材料,基底弹性的影响变得至关重要。这项研究的结果可用于确定流体流动的最佳参数,并为细胞培养创造合适的条件。
    Investigating the influence of different cellular mechanical and physical properties on cells in vitro is important for assessing cellular activities like differentiation, proliferation, and migration. Evaluating the mechanical response of the cells lodged on a scaffold due to variations in substrate roughness, substrate elasticity, fluid flow, and the shapes of the cells is the main goal of the study. In this comprehensive analysis, a combination of the fluid structure interaction method and the submodeled finite element technique was employed to anticipate the mechanical responses across various cells at the interface between cells and the substrate. Fluid inlet velocity, substrate roughness, and substrate material were varied in this analysis. Different cell shapes were considered along with various components such as cell membrane, cytoplasm, nucleus, and cytoskeletons. This analysis shows the effect of these individual parameters on the elastic strain and strain energy density of cells at the cell-substrate interface. The results highlight that substrate roughness has a more significant impact on the mechanical response of cells at the interface than substrate elasticity. However, effect of the substrate elasticity becomes crucial for extremely soft substrate materials. The results of this research can be applied to identify the optimal parameters for fluid flow and create a suitable condition for cell culture.
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  • 文章类型: Journal Article
    聚焦超声消融手术(FUAS)已被广泛用于治疗子宫肌瘤(UF)患者。这项研究旨在评估接受FUAS进行UFs或子宫肌瘤切除术(ME)的患者的子宫肌层硬度变化,并比较FUAS和ME组周围子宫肌层的恢复情况。我们的结果可能为指导UF患者的正确受孕时机提供更多证据。
    这项研究从2022年5月至2023年8月招募了173名患者。剪切波弹性成像(SWE)用于动态监测手术前后患者的肌层弹性变化。此外,我们的研究监测和分析了FUAS后靶向肌瘤的刚度变化,以及FUAS或ME后周围的子宫肌层。
    切除的纤维瘤周围的子宫肌层的硬度明显高于术前水平,直到6个月。相反,FUAS后1天周围子宫肌层的硬度仅暂时增加.FUAS组和ME组在周围子宫肌层硬度方面的比较显示,治疗前两组之间没有显着差异。治疗后1天、1、3、6个月,ME组周围子宫肌层的硬度明显高于FUAS组,分别。
    FUAS对周围子宫肌层的影响小于ME,这可能更有利于UF患者肌层弹性的恢复。
    UNASSIGNED: Focused ultrasound ablation surgery (FUAS) has been widely employed to treat patients with uterine fibroid (UF). This study aimed to estimate myometrial stiffness changes in patients who received FUAS for UFs or myomectomy (ME) and compare the recovery of surrounding myometrium between FUAS and ME groups. Our results may provide more evidence for guiding the proper conception timing in patients with UF.
    UNASSIGNED: This study enrolled 173 patients from May 2022 to August 2023. Shear wave elastography (SWE) was used to dynamically monitor myometrial elasticity changes in patients before and after surgery. Moreover, our study monitored and analyzed the stiffness changes in the targeted fibroid after FUAS, as well as in the myometrium around after FUAS or ME.
    UNASSIGNED: The stiffness of the myometrium around the resected fibroid was significantly higher than at the preoperative level until 6 months. Conversely, the stiffness of the surrounding myometrium was only temporarily increased 1 day after FUAS. The comparison between FUAS and ME groups regarding the stiffness of the surrounding myometrium showed that nonsignificant differences were detected between the two groups before the treatment. The stiffness of the surrounding myometrium in the ME group was statistically significantly higher than that of the FUAS group 1 day as well as 1, 3, and 6 months after the treatment, respectively.
    UNASSIGNED: The FUAS had less impact on the surrounding myometrium than the ME, which may be more conducive to the recovery of myometrial elasticity in patients with UF.
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  • 文章类型: Journal Article
    简介:需要短跑的运动,跳跃,和踢任务经常导致腿筋拉伤(HSI)。HSI的结构风险因素之一是腿筋的被动刚度增加。前交叉韧带(ACL)损伤史与HSI发病率增加70%相关,根据最近的一项荟萃分析。同一份报告建议,未来的研究应集中在HSI风险因素之间的关系。因此,本研究旨在回顾性比较有和没有ACL重建史的运动员腿筋被动刚度的变化.方法:采用基于超声的剪切波弹性成像,股二头肌长头的中腹被动肌肉刚度值,半膜,在有和没有ACL重建史的运动员中对半腱肌进行了评估和比较。结果:股二头肌长头(伤腿(IL):26.19±5.28KPa,未受伤的对侧(UL):26.16±7.41KPa,对照腿(CL):27.64±5.58KPa;ILvs.UL:p=1;ILvs.CL:p=1;ULvs.CL:p=1),半膜(IL:24.35±5.58KPa,UL:24.65±8.35KPa,CL:22.83±5.67KPa;ILvs.UL:p=1;ILvs.CL:p=1;ULvs.CL,p=1),或半腱肌(IL:22.45±7KPa,UL:25.52±7KPa,CL:22.54±4.4KPa;ILvs.UL:p=0.487;ILvs.CL:p=1;ULvs.CL,p=0.291)组间肌肉刚度值。结论:股二头肌长头的被动中肌腹刚度值,半腱肌,和半膜肌在先前受伤和未受伤的运动员之间没有显着差异;因此,可能需要进一步评估腿筋的其他肌肉区域。为了收集与运动员ACL重建后可能发生的结构变化相关的更全面的数据,未来的研究应该检查从起源到插入更广泛的肌肉区域的被动刚度。
    Introduction: Sports requiring sprinting, jumping, and kicking tasks frequently lead to hamstring strain injuries (HSI). One of the structural risk factors of HSI is the increased passive stiffness of the hamstrings. Anterior cruciate ligament (ACL) injury history is associated with a 70% increase in the incidence of HSI, according to a recent meta-analysis. The same report recommended that future research should concentrate on the relationships between the HSI risk factors. Hence, the present study aimed to retrospectively compare changes in the passive stiffness of the hamstrings in athletes with and without ACL reconstruction history. Methods: Using ultrasound-based shear-wave elastography, the mid-belly passive muscle stiffness values of the biceps femoris long head, semimembranosus, and semitendinosus muscles were assessed and compared amongst athletes with and without a history of ACL reconstruction. Results: There were no significant differences in the biceps femoris long head (injured leg (IL): 26.19 ± 5.28 KPa, uninjured contralateral (UL): 26.16 ± 7.41 KPa, control legs (CL): 27.64 ± 5.58 KPa; IL vs. UL: p = 1; IL vs. CL: p = 1; UL vs. CL: p = 1), semimembranosus (IL: 24.35 ± 5.58 KPa, UL: 24.65 ± 8.35 KPa, CL: 22.83 ± 5.67 KPa; IL vs. UL: p = 1; IL vs. CL: p = 1; UL vs. CL, p = 1), or semitendinosus (IL: 22.45 ± 7 KPa, UL: 25.52 ± 7 KPa, CL: 22.54 ± 4.4 KPa; IL vs. UL: p = 0.487; IL vs. CL: p = 1; UL vs. CL, p = 0.291) muscle stiffness values between groups. Conclusions: The passive mid-muscle belly stiffness values of the biceps femoris long head, semitendinosus, and semimembranosus muscles did not significantly differ between previously injured and uninjured athletes; therefore, further assessment for other muscle regions of hamstrings may be necessary. To collect more comprehensive data related to the structural changes that may occur following ACL reconstructions in athletes, a future study should examine the passive stiffness of wider muscle regions from origin to insertion.
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  • 文章类型: Journal Article
    在人的脸上,嘴唇是最重要的解剖元素之一,形态和功能。形态学上,它们对美学有重大影响,异常的嘴唇形态会导致社会心理学问题。功能上,它们在呼吸中起着至关重要的作用,衔接,喂养,和吞咽。研制了一种能在临床试验中准确简便地测量口周组织弹性模量的仪器,并对其测量灵敏度进行了评价。该装置基本上是由力传感器和位移传感器组成的单轴压缩装置。位移传感器的工作原理是由于软材料的变形而增强恢复力。使用该设备,测量具有各种柔软度的聚氨酯弹性体的力和位移,是人体组织的模型材料。所开发的仪器测得的应力与杨氏模量成比例增加,并通过压缩设备在杨氏模量的整个区域测量,表示该关系可用于校准。使用开发的仪器进行的临床试验显示,上唇的杨氏模量,左脸颊,右脸颊分别为45、4.0和9.9kPa,分别。在本文中,从正畸学的角度讨论了该设备的优点和对所获得数据的解释。
    On the human face, the lips are one of the most important anatomical elements, both morphologically and functionally. Morphologically, they have a significant impact on aesthetics, and abnormal lip morphology causes sociopsychological problems. Functionally, they play a crucial role in breathing, articulation, feeding, and swallowing. An apparatus that can accurately and easily measure the elastic modulus of perioral tissues in clinical tests was developed, and its measurement sensitivity was evaluated. The apparatus is basically a uniaxial compression apparatus consisting of a force sensor and a displacement sensor. The displacement sensor works by enhancing the restoring force due to the deformation of soft materials. Using the apparatus, the force and the displacement were measured for polyurethane elastomers with various levels of softness, which are a model material of human tissues. The stress measured by the developed apparatus increased in proportion to Young\'s modulus, and was measured by the compression apparatus at the whole region of Young\'s modulus, indicating that the relation can be used for calibration. Clinical tests using the developed apparatus revealed that Young\'s moduli for upper lip, left cheek, and right cheek were evaluated to be 45, 4.0, and 9.9 kPa, respectively. In this paper, the advantages of this apparatus and the interpretation of the data obtained are discussed from the perspective of orthodontics.
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  • 文章类型: Journal Article
    使用布里渊光学扫描系统(IntelonOpics)(BOSS)评估正常人和圆锥角膜患者的角膜生物力学特性,并将其与超高速Scheimpflug成像(CorvisST;OculusOptikgerteGmbH)进行比较。
    本前瞻性研究包括60例患者(30例正常和30例圆锥角膜)的60只眼,单中心,比较,非干预性研究。使用CorvisST和BOSS评估角膜生物力学。有了BOSS,每个角膜图像采集三次,测量8毫米直径内的10个位置。提取的参数包括平均值,最大值,和最小布里渊移位。这10点也被分组为上级,中央,和劣等地区。使用重复性系数和变异系数评估BOSS重复性。此外,使用CorvisST和BOSS比较正常人和圆锥角膜患者。
    BOSS表现出良好的可重复性,正常人单个点的可重复性系数为0.098至0.138GHz,圆锥角膜患者的可重复性系数为0.096至0.149GHz。统计分析显示正常人和圆锥角膜患者之间存在显着差异。表明圆锥角膜较软,用CorvisST和BOSS观察到。具体来说,BOSS在均值上表现出显著差异,劣等,优越的意思,最大值,和最小布里渊频移(所有P<.05),而CorvisST在首次压平时显示出刚度参数的高度显着差异,应力应变指数,变形振幅比,和逆积分半径(所有P<.001)。
    使用BOSS和CorvisST,角膜生物力学测量被证明具有高度的可重复性,并且有效地证明了正常人与圆锥角膜患者之间的显着差异。[JRefractSurg.2024;40(8):e569-e578。].
    UNASSIGNED: To assess the corneal biomechanical properties in normal individuals and patients with keratoconus using the Brillouin optical scanning system (Intelon Optics) (BOSS) and compare them with ultra-high-speed Scheimpflug imaging (Corvis ST; Oculus Optikgeräte GmbH).
    UNASSIGNED: Sixty eyes from 60 patients (30 normal and 30 keratoconus) were included in this prospective, single-center, comparative, non-interventional study. Corneal biomechanics were evaluated using the Corvis ST and the BOSS. With the BOSS, each corneal image was acquired three times, measuring 10 locations within an 8-mm diameter. Parameters extracted included mean, maximum, and minimum Brillouin shift. These 10 points were also grouped into superior, central, and inferior regions. BOSS repeatability was assessed using the coefficient of repeatability and coefficient of variation. Furthermore, normal individuals and patients with keratoconus were compared using the Corvis ST and BOSS.
    UNASSIGNED: The BOSS exhibited good repeatability, with coefficient of repeatability ranging from 0.098 to 0.138 GHz for single points in normal individuals and 0.096 to 0.149 GHz for patients with keratoconus. Statistical analysis revealed significant differences between normal individuals and patients with keratoconus, indicating softer corneas in keratoconus, observed with both the Corvis ST and BOSS. Specifically, the BOSS showed significant differences in mean, inferior, and superior mean, maximum, and minimum Brillouin frequency shift (all P < .05), whereas the Corvis ST displayed highly significant differences in stiffness parameter at first applanation, stress strain index, deformation amplitude ratio, and inverse integrated radius (all P < .001).
    UNASSIGNED: Corneal biomechanical measurements proved highly repeatable and effectively demonstrated significant differences between normal individuals and patients with keratoconus using both the BOSS and the Corvis ST. [J Refract Surg. 2024;40(8):e569-e578.].
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  • 文章类型: Journal Article
    原子力显微镜(AFM)是用于表征纳米级软生物样品和生物材料的机械性能的主要技术之一。尽管AFM社区努力推广开源数据分析工具,在需要通用分析程序的领域中,标准化仍然是一个重要的问题。基于AFM的机械测量涉及向样品施加受控的力并测量所谓的力-距离曲线中产生的变形。这些可以包括简单的方法和在各种频率下的缩回或振荡循环(微流变)。为了提取定量参数,如弹性模量,从这些测量中,使用数据分析软件处理AFM测量。尽管存在开放式工具并允许获得样品的机械性能,其中大多数只包括标准的弹性模型,不允许处理微流变数据。在这项工作中,我们开发了一个开源软件包(称为PyFMLab,从python力显微镜实验室开始),能够从常规的力-距离曲线和微流变测量中确定样品的粘弹性。
    PyFMLab是用Python编写的,它提供了可访问的语法和足够的计算效率。将软件功能划分为单独的,独立库,以增强代码组织和模块化,并提高可读性,可维护性,可测试性,和可重用性。要验证PyFMLab,两个AFM数据集,一个由简单的力曲线组成,另一个包括振荡测量,收集在HeLa细胞上。
    使用PyFMLab分析的两个数据集上获得的粘弹性参数针对数据处理专有软件和在获得等效结果之前开发的验证MATLAB例程进行了验证。
    其开源性质和多功能性使PyFMLab成为开源解决方案,为从力-距离曲线和微流变测量中对生物样品进行标准化粘弹性表征铺平了道路。
    就像我们可以通过触摸来测试水果的成熟度一样,我们可以用我们的手轻轻触摸物体,并确定它是软还是硬。医生使用这种技术,叫做触诊,探索我们的器官并检查疾病的迹象。我们可以考虑做类似的事情,但在一个更小的尺度——纳米尺度——这么小,你甚至不能用肉眼看到它。原子力显微镜(AFM)允许在纳米级应用触诊。AFM是一种强大的工具,可以让科学家检查难以置信的小物体,像单个细胞或分子。AFM使用超敏感的“手指”来触摸和探索太小而无法在常规显微镜下看到的东西。在欧洲项目Phys2BioMed期间,我们探讨了如何应用AFM诊断疾病使用纳米化。例如,触摸患者活检样本,并确定他们有多柔软或僵硬。这里的陷阱:没有一个单一的,标准化的方法或软件,可以有效地处理从AFM获得的所有数据。这有点像有很多不同的语言,但没有通用的翻译。就像秤或量杯是标准化的,科学家需要准确和一致地分析AFM数据。这对于确保不同研究人员在不同仪器上获得的结果之间的可靠比较至关重要,当结果用于诊断或预测目的时,这一点特别重要。为了帮助解决这个问题,我们开发了PyFMLab.该软件是一个可靠且易于使用的工具,可将AFM数据转换为有关正在研究的微小结构的见解。通过提供标准化的,开源,模块化和可访问的方式来分析AFM数据,PyFMLab使生物物理学领域的普及,为AFM的临床应用铺平了道路。
    UNASSIGNED: Atomic force microscopy (AFM) is one of the main techniques used to characterize the mechanical properties of soft biological samples and biomaterials at the nanoscale. Despite efforts made by the AFM community to promote open-source data analysis tools, standardization continues to be a significant concern in a field that requires common analysis procedures. AFM-based mechanical measurements involve applying a controlled force to the sample and measure the resulting deformation in the so-called force-distance curves. These may include simple approach and retract or oscillatory cycles at various frequencies (microrheology). To extract quantitative parameters, such as the elastic modulus, from these measurements, AFM measurements are processed using data analysis software. Although open tools exist and allow obtaining the mechanical properties of the sample, most of them only include standard elastic models and do not allow the processing of microrheology data. In this work, we have developed an open-source software package (called PyFMLab, as of python force microscopy laboratory) capable of determining the viscoelastic properties of samples from both conventional force-distance curves and microrheology measurements.
    UNASSIGNED: PyFMLab has been written in Python, which provides an accessible syntax and sufficient computational efficiency. The software features were divided into separate, self-contained libraries to enhance code organization and modularity and to improve readability, maintainability, testability, and reusability. To validate PyFMLab, two AFM datasets, one composed of simple force curves and another including oscillatory measurements, were collected on HeLa cells.
    UNASSIGNED: The viscoelastic parameters obtained on the two datasets analysed using PyFMLab were validated against data processing proprietary software and against validated MATLAB routines developed before obtaining equivalent results.
    UNASSIGNED: Its open-source nature and versatility makes PyFMLab an open-source solution that paves the way for standardized viscoelastic characterization of biological samples from both force-distance curves and microrheology measurements.
    Just like we can test the ripeness of fruit by touching it, we can use our hands to gently touch an object and determine if it is soft or stiff. Doctors use this technique, called palpation, to explore our organs and check for signs of disease. We can think about doing something similar, but on a much smaller scale — the nanoscale — so small that you cannot even see it with your naked eye. Atomic force microscopy (AFM) allows to apply palpation at the nanoscale. AFM is a powerful tool that allows scientists to examine incredibly small objects, like individual cells or molecules. AFM uses super sensitive “fingers” to touch and explore things that are too small to be seen under a regular microscope. During the European project Phys2BioMed, we explored how to apply AFM to diagnose diseases using nanopalpation. For example, touching samples from biopsies of patients and determining how soft or stiff they are. Here\'s the catch: there is not a single, standardized method or software that can efficiently process all the data obtained from AFM. It\'s a bit like having a lot of different languages but no universal translator. Just like a scale or a measuring cup are standardized, scientists need to analyze AFM data accurately and consistently. This is crucial to ensure reliable comparisons between results obtained by different researchers on different instruments, something particularly important when the results are to be used for diagnostic or predictive purposes. To help tackle this problem, we have developed PyFMLab. This software is a reliable and easy-to-use tool that translates AFM data into insights about the tiny structures being studied. By providing a standardized, open-source, modular and accessible way to analyze AFM data, PyFMLab democratizes access to this field of Biophysics, paving the way for clinical applications of AFM.
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  • 文章类型: Journal Article
    19种商品的摩擦学特性,分为六类(酸奶,敷料,传播,粥,乳化酱,和糖浆)进行了与它们的流变学(动态振荡剪切测试)和营养特性(脂肪,碳水化合物,和蛋白质)。摩擦学系统(一个玻璃球和三个聚二甲基硅氧烷销)产生了扩展的Stribeck曲线,在滑动速度(v)(10-8至100m/s)的扩展范围内监测摩擦因子(f)。摩擦学参数(f,v)在划分摩擦状态的四个拐点(X1,静态和动力学状态之间的分离点;X1-X2,边界;X2-X3,混合;X3-X4,流体动力学状态)和X3和X4(s)之间的斜率进行主成分分析和主成分的层次聚类,使用流变和营养参数作为定量补充变量。摩擦学模式主要受粘度影响,粘弹性,屈服应力,脂肪含量,和粒子的存在(例如,糖,蛋白质,和纤维)和粘贴材料(例如,淀粉和改性淀粉)。19种摩擦学模式分为3个簇:脂肪和/或粘弹性主导食物的低f和s(簇1),食品乳液的低f和高s和/或剪切稀化程度低的食品乳液(集群2),对于最粘稠的食物或存在颗粒物的食物(集群3),在边界状态下均为高f。这些结果表明,与食品类别相比,成分和流变特性对复杂摩擦学模式的分类具有更深远的影响。
    The tribological properties of 19 commercial food products, grouped into six categories (yogurt, dressings, spreads, porridges, emulsified sauces, and syrups) were investigated in relation to their rheological (dynamic oscillatory shear test) and nutritional properties (fat, carbohydrate, and protein). A tribological system (a glass ball and three polydimethylsiloxane pins) generated the extended Stribeck curve, monitoring friction factors (f) over an extended range of sliding speed (v) (10-8 to 100 m/s). Tribological parameters (f, v) at four inflection points dividing the frictional regimes (X1, breakaway point between the static and kinetic regimes; X1-X2, boundary; X2-X3, mixed; X3-X4, hydrodynamic regimes) and the slope between X3 and X4 (s) were subjected to principal component analysis and hierarchical clustering on principal components, using rheological and nutritional parameters as quantitative supplementary variables. Tribological patterns were predominantly influenced by viscosity, viscoelasticity, yield stress, fat content, and the presence of particles (e.g., sugar, proteins, and fibers) and pasting materials (e.g., starches and modified starches). The 19 tribological patterns were classified into 3 clusters: low f and s for fat- and/or viscoelastic-dominant foods (Cluster 1), low f and high s for food emulsions and/or those with low extent of shear-thinning (Cluster 2), and high f at the boundary regime either for the most viscous foods or for those in the presence of particulates (Cluster 3). These results suggest that the compositional and rheological properties have a more profound impact on the classification of complex tribological patterns than the categories of food products.
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