echinoderm

棘皮动物
  • 文章类型: Journal Article
    在捕食者的攻击中幸存下来的最引人注目的适应之一是分离附属物,这一过程被称为自动切开术。这发生在各种动物身上,包括蜥蜴(尾巴),螃蟹(腿),和海星(武器)。对进化进行了广泛的调查,生态学,和自切开术的生物力学影响,1,2,3,但对控制动物自断的神经机制知之甚少。然而,已经报道了在海星中存在作为自创促进因子的肽的证据。4在研究海星Asteriasrubens中sulfakinin/胆囊收缩素型神经肽(ArSK/CCK1)的体内作用时,在5,6中,我们观察到该肽在一些动物中触发了手臂自断。此外,当ArSK/CCK1的注射与臂的机械夹紧相结合时,受试动物中85%发生夹钳臂的自切,46%的人还自动切除一个或多个其他手臂。相比之下,在注射水的夹住动物(对照)中没有观察到自切开.为了检查这些发现的生理相关性,我们分析了ArSK/CCK1在自切平面中的表达,A.rubens.7,8根据其体内作用,表达ArSK/CCK1的神经纤维在止血带肌肉中显示,在自动切开术期间和之后调节手臂收缩的肌肉带。我们得出的结论是,ArSK/CCK1在海星中起着自创促进因子的作用,因此它是第一个被鉴定为动物自创调节剂的神经肽。
    One of the most remarkable adaptations to survive attacks from predators is to detach an appendage-a process known as autotomy. This occurs in a variety of animals, including lizards (tail), crabs (legs), and starfish (arms). There has been extensive investigation of the evolution, ecology, and biomechanical impact of autotomy,1,2,3 but little is known about neural mechanisms controlling autotomy in animals. However, evidence for the existence of a peptide that acts as an autotomy-promoting factor in starfish has been reported.4 While investigating in vivo effects of a sulfakinin/cholecystokinin-type neuropeptide (ArSK/CCK1) in the starfish Asterias rubens,5,6 we observed that this peptide triggered arm autotomy in some animals. Furthermore, when injection of ArSK/CCK1 was combined with mechanical clamping of an arm, autotomy of the clamped arm occurred in 85% of animals tested, with 46% also autotomizing one or more other arms. In contrast, no autotomy was observed in clamped animals that were injected with water (control). To examine the physiological relevance of these findings, we analyzed expression of ArSK/CCK1 in the autotomy plane, a specialized region at the base of the arms in A. rubens.7,8 In accordance with its in vivo effects, nerve fibers expressing ArSK/CCK1 were revealed in the tourniquet muscle, a band of muscle that mediates constriction of the arm during and after autotomy. We conclude that ArSK/CCK1 acts as an autotomy-promoting factor in starfish and as such it is the first neuropeptide to be identified as a regulator of autotomy in animals.
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  • 文章类型: Journal Article
    Abatus是南大洋不规则孵化海胆的一个属。在描述的11种物种中,三个共同的形态特征,并在亚南极省的沿海区呈现出一种幼稚的生活方式;巴塔哥尼亚的海绵体,A.克格伦的cordatus,和A.agassizii在火地岛和南设得兰群岛。Abatus的系统,基于形态特征和不完整的系统发育,是复杂的,基本上没有解决。本研究使用几何形态计量学分析(GM)评估了这些物种之间的形状变化。为此,来自四个地方的72人;南设得兰群岛,Kerguelen,巴塔哥尼亚,福克兰群岛/马尔维纳斯群岛被拍照,37个地标被数字化。为了评估物种之间的形状差异,进行了主成分分析和Procrustes方差分析。我们的结果显示福克兰群岛/马尔维纳斯群岛与其他地区之间存在显着差异,其特征是更窄和更细长的形状和显著影响的位置,而不是性别。此外,使用置换检验和形状和大小之间的回归来评估异速的效果,在所有组的生长过程中表现出显著的形状变化。讨论了福克兰群岛/马尔维纳斯群体表现出表型可塑性或代表不同进化单位的可能性。最后,转基因被证明是区分这些物种的强大工具,强调其在系统研究中的实用性。
    Abatus is a genus of irregular brooding sea urchins to the Southern Ocean. Among the 11 described species, three shared morphological traits and present an infaunal lifestyle in the infralittoral from the Subantarctic province; A. cavernosus in Patagonia, A. cordatus in Kerguelen, and A. agassizii in Tierra del Fuego and South Shetlands. The systematic of Abatus, based on morphological characters and incomplete phylogenies, is complex and largely unresolved. This study evaluates the shape variation among these species using geometric morphometrics analysis (GM). For this, 72 individuals from four locations; South Shetlands, Kerguelen, Patagonia, and Falklands/Malvinas were photographed, and 37 landmarks were digitized. To evaluate the shape differences among species, a principal component analysis and a Procrustes ANOVA were performed. Our results showed a marked difference between the Falklands/Malvinas and the other localities, characterized by a narrower and more elongated shape and a significant influence of location in shape but not sex. Additionally, the effect of allometry was evaluated using a permutation test and a regression between shape and size, showing significant shape changes during growth in all groups. The possibility that the Falklands/Malvinas group shows phenotypic plasticity or represents a distinct evolutionary unit is discussed. Finally, GM proved to be a powerful tool to differentiate these species, highlighting its utility in systematic studies.
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  • 文章类型: Journal Article
    稳定的转基因是模型生物生物学中的转化工具。虽然海胆是细胞和发育生物学中最古老的动物模型之一,对这种动物的研究很大程度上依赖于对野生动物的短暂操纵,没有稳定转基因的策略。在这里,我们基于最近的进展来开发一种更容易遗传的海胆物种,并建立了一种稳健的转基因整合方法。三种常用的转座子(Minos,Tol2,piggyBac)进行了非自主换位测试,使用含有H2B-mCerulean核标记上游的聚泛素启动子的质粒。Minos是唯一的转座因子,导致变态后的显着表达。将F0动物提高到性成熟并产卵以确定种系整合,转基因遗传频率,并表征转基因在F1后代中的表达模式。结果表明转基因通过种系传播,种系转基因海胆的第一个例子,确实是任何棘皮动物。这一里程碑为产生不同的转基因资源铺平了道路,这将大大提高效用,再现性,和海胆研究的效率。
    Stable transgenesis is a transformative tool in model organism biology. Although the sea urchin is one of the oldest animal models in cell and developmental biology, studies in this animal have largely relied on transient manipulation of wild animals, without a strategy for stable transgenesis. Here, we build on recent progress to develop a more genetically tractable sea urchin species, Lytechinus pictus, and establish a robust transgene integration method. Three commonly used transposons (Minos, Tol2 and piggyBac) were tested for non-autonomous transposition, using plasmids containing a polyubiquitin promoter upstream of a H2B-mCerulean nuclear marker. Minos was the only transposable element that resulted in significant expression beyond metamorphosis. F0 animals were raised to sexual maturity, and spawned to determine germline integration and transgene inheritance frequency, and to characterize expression patterns of the transgene in F1 progeny. The results demonstrate transgene transmission through the germline, the first example of a germline transgenic sea urchin and, indeed, of any echinoderm. This milestone paves the way for the generation of diverse transgenic resources that will dramatically enhance the utility, reproducibility and efficiency of sea urchin research.
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  • 文章类型: Journal Article
    Sox基因家族,广泛分布在整个动物界的转录因子集合,在许多发育过程中起着至关重要的作用。棘皮动物在许多研究领域占有举足轻重的地位,比如神经科学,性别决定和分化,和胚胎发育。然而,到目前为止,尚未进行全面的研究来表征和分析棘皮动物中的Sox基因。在本研究中,使用生物信息学方法分析了11种棘皮动物中Sox家族基因的进化和表达。结果显示共有70个Sox基因,不同棘皮动物的计数范围从5到8。系统发育分析表明,鉴定的Sox基因可以分为七个不同的类别:SoxB1类,SoxB2类,SoxC类,SoxD类,SoxE类,SoxF类和SoxH类。值得注意的是,SoxB1,SoxB2和SoxF基因普遍存在于所有研究的棘皮动物中,这表明这些基因在棘皮动物中可能是保守的。在三种棘皮动物中观察到的Sox基因的时空表达模式表明,各种Sox成员发挥着不同的功能作用。值得注意的是,SoxB1可能参与棘皮动物卵巢发育,而SoxH可能在海星和海参的睾丸发育中起关键作用。总的来说,本研究为探索棘皮动物中的Sox基因提供了分子基础,为未来的系统发育和基因组研究提供了宝贵的资源。
    The Sox gene family, a collection of transcription factors widely distributed throughout the animal kingdom, plays a crucial role in numerous developmental processes. Echinoderms occupy a pivotal position in many research fields, such as neuroscience, sex determination and differentiation, and embryonic development. However, to date, no comprehensive study has been conducted to characterize and analyze Sox genes in echinoderms. In the present study, the evolution and expression of Sox family genes across 11 echinoderms were analyzed using bioinformatics methods. The results revealed a total of 70 Sox genes, with counts ranging from 5 to 8 across different echinoderms. Phylogenetic analysis revealed that the identified Sox genes could be categorized into seven distinct classes: the SoxB1 class, SoxB2 class, SoxC class, SoxD class, SoxE class, SoxF class and SoxH class. Notably, the SoxB1, SoxB2, and SoxF genes were ubiquitously present in all the echinoderms studied, which suggests that these genes may be conserved in echinoderms. The spatiotemporal expression patterns observed for Sox genes in the three echinoderms indicated that various Sox members perform distinct functional roles. Notably, SoxB1 is likely involved in echinoderm ovary development, while SoxH may play a crucial role in testis development in starfish and sea cucumber. In general, the present investigation provides a molecular foundation for exploring the Sox gene in echinoderms, providing a valuable resource for future phylogenetic and genomic studies.
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  • 文章类型: Journal Article
    制备了肾小管花腔液中的无细胞水提物,并在体外检查了其对HepG2细胞的降糖作用。特别是,采用细胞化学的组合,流式细胞仪,PCR,和蛋白质印迹技术,我们评估了其对葡萄糖内化和储存以及两种葡萄糖转运蛋白GLUT-2和-4的上调和表面易位的作用。表情的变化,合成,和/或GLUT2相关转录因子肝细胞核因子1α(HNF1α)和GLUT-4易位调节因子胰岛素受体底物1(IRS-1)和AKT的激活也进行了研究。我们的结果显示HepG2细胞改善了葡萄糖反应,导致暴露后葡萄糖消耗/摄取和糖原储存明显增加。此外,提取物诱导的分子重编程涉及(i)IRS1基因表达的上调,(ii)HNF1α的转录和翻译水平,AKT,和GLUT-4,(iii)AKT的磷酸化水平,(iv)GLUT-2蛋白的合成,和(v)GLUT-2和-4转运蛋白易位到质膜上。累计,我们的研究结果提示,从H.tubulosa的腔室液提取物可以考虑到开发新的治疗糖尿病的药物。
    The cell-free aqueous extract from the coelomic fluid of Holothuria tubulosa was prepared and examined for its glucose-lowering effect on HepG2 cells in vitro. In particular, employing a combination of cytochemical, flow cytometric, PCR, and protein blot techniques, we evaluated its role on glucose internalization and storage and on the upregulation and surface translocation of the two glucose transporters GLUT-2 and -4. The changes in expression, synthesis, and/or activation of the GLUT2-related transcription factor hepatocyte nuclear factor-1 alpha (HNF1α) and the GLUT-4-translocation regulatory factors insulin receptor substrate-1 (IRS-1) and AKT were also studied. Our results showed the improved glucose response by HepG2 cells, leading to an evident increase in glucose consumption/uptake and glycogen storage upon exposure. Moreover, the extract induced molecular reprogramming involving the upregulation of (i) IRS1 gene expression, (ii) the transcription and translation levels of HNF1α, AKT, and GLUT-4, (iii) the phosphorylation level of AKT, (iv) the synthesis of GLUT-2 protein, and (v) the translocation of GLUT-2 and -4 transporters onto the plasma membrane. Cumulatively, our results suggest that the coelomic fluid extract from H. tubulosa can be taken into consideration for the development of novel treatment agents against diabetes mellitus.
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  • 文章类型: Journal Article
    在这项研究中,我们使用两种不同的动物模型研究了PVC微塑料(PVC-MPs)的作用:脆性恒星Ophiactisvirens,和非洲爪蛙爪爪狼。这是首次使用环境相关的PVC-MP样品进行的研究,该样品是通过对普通PVC管道进行机械破碎而获得的。在成年阶段进行了脆性恒星的暴露实验,持续时间为14天,根据标准化的FETAX方案(FrogEmbryo畸形发生试验-非洲爪爪鱼),在胚胎发生发育阶段进行了非洲爪蛙的试验。对于这两种型号,分析了不同的终点:死亡率,发育参数,通过光学和电子显微镜对靶器官进行行为测定和组织学分析。结果表明,浓度为0.1μgmL-1的PVC在两种模型中都不会引起任何不利影响(常见的NOEC浓度),而暴露于1μgmL-1PVC对至少一种物种(常见的LOEC浓度)产生不利影响。特别是手臂再生效率是O.virens中受影响最大的参数,导致1μgmL-1PVC的分化模式显着降低。相反,在X.laevis幼虫的组织病理学分析和行为测试是最敏感的终点,在10μgmL-1PVC下表现出几个异常数字和不同的游泳速度。组织病理学分析显示退化细胞的丰度更高,就控制而言,暴露幼虫肠道中的固缩核和细胞碎片。在这项工作中进行的比较分析可以表征PVC-MPs对这两种物种的作用的特异性,强调探索大范围端点的重要性,以在微塑料研究的新兴领域提供足够的保护。
    In this study, we investigated the effects of PVC microplastics (PVC-MPs) using two different animal models: the brittle star Ophiactis virens, and the African clawed frog Xenopus laevis. This is the first study using an environmental relevant sample of PVC-MPs obtained through mechanical fragmentation of a common PVC plumbing pipe. Exposure experiments on brittle star were performed on the adult stage for a duration of 14 days, while those on African clawed frog were performed on the embryogenic developmental stage according to the standardized FETAX protocol (Frog Embryo Teratogenesis Assay-Xenopus). For both models, different endpoints were analysed: mortality, developmental parameters, behavioural assays and histological analyses on target organs by optical and electronic microscopy. Results showed that the concentration of 0.1 μg mL-1 PVC do not cause any adverse effects in both models (common NOEC concentration), while exposure to 1 μg mL-1 PVC adversely affected at least one species (common LOEC concentration). In particular arm regeneration efficiency was the most affected parameters in O. virens leading to a significantly lower differentiation pattern at 1 μg mL-1 PVC. On the contrary, in X. laevis larvae histopathological analyses and behavioural tests were the most susceptible endpoints, exhibiting several abnormal figures and different swimming speed at 10 μg mL-1 PVC. Histopathological analyses revealed a higher abundance of degenerating cells, pyknotic nuclei and cellular debris in the gut of exposed larvae in respect to control. The comparative analyses performed in this work allowed to characterize the specificity of action of the PVC-MPs on the two species, underlining the importance of exploring a large spectrum of endpoints to offer adequate protection in the emerging fields of microplastic research.
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  • 文章类型: Journal Article
    再生是最迷人但最不了解的生物过程之一。棘皮动物,与人类最密切相关的无脊椎动物群体之一,有助于我们理解再生过程的遗传基础。在棘皮动物中,海参有能力在受伤后恢复大部分身体部位,包括肠和神经组织.海参中这些能力背后的细胞和分子事件已在Holothuriaglaberrima物种中得到了最广泛的研究。然而,由于缺乏足够的基因组资源,对该物种再生能力的研究受到了阻碍。这里,我们报告了H.glaberrima的第一次基因组组装草案,并证明了其对未来遗传研究的价值。仅使用短测序读数,我们将基因组组装成89,105个支架,总计1.1GB,N50为25千碱基。我们对基因组的BUSCO评估从978个基因中查询了894个(91.4%)完整和部分基因。我们整合了来自几个不同生活史阶段的转录组数据,以在我们的最终组装中注释51,415个基因。为了证明基因组的有用性,我们完全注释了黑素转铁蛋白(Mtf)基因家族,对海参肠的再生有潜在的作用。使用这些相同的数据,我们提取了线粒体基因组,显示出比其他齿部高的保守性。因此,这些数据将成为正在进行的海参再生研究和其他研究的重要资源。
    Regeneration is one of the most fascinating and yet least understood biological processes. Echinoderms, one of the closest related invertebrate groups to humans, can contribute to our understanding of the genetic basis of regenerative processes. Among echinoderms, sea cucumbers have the ability to grow back most of their body parts following injury, including the intestine and nervous tissue. The cellular and molecular events underlying these abilities in sea cucumbers have been most extensively studied in the species Holothuria glaberrima. However, research into the regenerative abilities of this species has been impeded due to the lack of adequate genomic resources. Here, we report the first draft genome assembly of H. glaberrima and demonstrate its value for future genetic studies. Using only short sequencing reads, we assembled the genome into 89,105 scaffolds totaling 1.1 gigabases with an N50 of 25 kilobases. Our BUSCO assessment of the genome resulted in 894 (91.4%) complete and partial genes from 978 genes queried. We incorporated transcriptomic data from several different life history stages to annotate 51,415 genes in our final assembly. To demonstrate the usefulness of the genome, we fully annotated the melanotransferrin (Mtf) gene family, which have a potential role in the regeneration of the sea cucumber intestine. Using these same data, we extracted the mitochondrial genome, which showed high conservation to that of other holothuroids. Thus, these data will be a critical resource for ongoing studies of regeneration and other studies in sea cucumbers.
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  • 文章类型: Journal Article
    尚不清楚具有径向对称性的动物如何在没有大脑的情况下控制运动。结合实验,数学建模,和机器人技术,我们测试了这种控制在海星(Protoreasternodosus)中出现的程度,来自对其数百英尺的局部控制以及它们与身体的机械相互作用。我们发现,这些动物通过招募更多的脚来补偿其淹没重量的实验性增加,这些脚在其弹跳步态期间在运动周期的动力冲程中同步。海星力学的数学模型在没有中央控制器的情况下复制了这种对载荷的响应。发现机器人海星通过纯粹的分散控制在更高的负载下类似地招募了更多的执行器。这些结果表明,一系列生物或工程执行器能够协同运输,其中执行器由人体力学动态招募。特别是,身体的垂直振荡用于招募更多的脚,以克服重量,推动身体向前。这种形式的分布式控制与由中枢神经系统控制的动物运动的常规视图形成对比,并为设计具有致动器阵列的工程设备提供了灵感。
    It is unclear how animals with radial symmetry control locomotion without a brain. Using a combination of experiments, mathematical modeling, and robotics, we tested the extent to which this control emerges in sea stars (Protoreaster nodosus) from the local control of their hundreds of feet and their mechanical interactions with the body. We discovered that these animals compensate for an experimental increase in their submerged weight by recruiting more feet that synchronize in the power stroke of the locomotor cycle during their bouncing gait. Mathematical modeling of the mechanics of a sea star replicated this response to loading without a central controller. A robotic sea star was found to similarly recruit more actuators under higher loads through purely decentralized control. These results suggest that an array of biological or engineered actuators are capable of cooperative transport where the actuators are dynamically recruited by the mechanics of the body. In particular, the body\'s vertical oscillations serve to recruit feet in greater numbers to overcome the weight to propel the body forward. This form of distributed control contrasts the conventional view of animal locomotion as governed by the central nervous system and offers inspiration for the design of engineered devices with arrays of actuators.
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  • 文章类型: Journal Article
    夜间人造光(ALAN)对沿海栖息地的威胁越来越大,并可能加剧其他压力源的影响。海带森林是温带珊瑚礁上的主要栖息地,但由于海洋变暖和过度放牧而正在减少。我们测试了ALAN(黑暗与ALAN)和变暖(环境与温暖)对海胆Centrostephanusrodgersii的放牧率和性腺指数的独立和交互影响。在这些治疗中,海胆喂养\'新鲜\'海带或\'处理\'海带。将处理过的海带(Eckloniaradiata)暴露于与海胆相同的光和温度组合。我们评估了光合产量,处理过的海带的碳和氮含量以及C:N比,以帮助确定对海胆的任何影响背后的潜在驱动因素。放牧随着变暖而增加,海胆喂养新鲜海带的阿兰,并且随着喂食处理过的海带的海胆的变暖而增加。与喂食新鲜海带的海胆的黑暗/环境处理相比,ALAN/环境和黑暗/温暖处理的性腺指数更高。在一个时间点,ALAN/环境处理中的海带碳含量高于ALAN/热处理。这表明海洋变暖和ALAN可能会增加海胆对石礁的放牧压力,管理策略的重要发现。
    Artificial light at night (ALAN) is a growing threat to coastal habitats, and is likely to exacerbate the impacts of other stressors. Kelp forests are dominant habitats on temperate reefs but are declining due to ocean warming and overgrazing. We tested the independent and interactive effects of ALAN (dark versus ALAN) and warming (ambient versus warm) on grazing rates and gonad index of the sea urchin Centrostephanus rodgersii. Within these treatments, urchins were fed either \'fresh\' kelp or \'treated\' kelp. Treated kelp (Ecklonia radiata) was exposed to the same light and temperature combinations as urchins. We assessed photosynthetic yield, carbon and nitrogen content and C : N ratio of treated kelp to help identify potential drivers behind any effects on urchins. Grazing increased with warming and ALAN for urchins fed fresh kelp, and increased with warming for urchins fed treated kelp. Gonad index was higher in ALAN/ambient and dark/warm treatments compared to dark/ambient treatments for urchins fed fresh kelp. Kelp carbon content was higher in ALAN/ambient treatments than ALAN/warm treatments at one time point. This indicates ocean warming and ALAN may increase urchin grazing pressure on rocky reefs, an important finding for management strategies.
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  • 文章类型: Journal Article
    进化发育(evo-devo)生物学的一个挑战是扩大用于研究动物多样性如何通过胚胎发育变化进化的研究生物的广度。新的实验系统应将相关的系统发育位置与可用的分子工具和基因组资源相结合。作为部落姐妹的门,棘皮动物为我们对胚胎模式的了解做出了广泛的贡献,器官发育和细胞类型进化。棘皮动物表现出各种形状多样的幼虫形式,使它们成为比较胚胎发育策略进化的合适群体。然而,由于实验室的可及性和现有的技术,大多数研究主要集中在海胆和海星上。作为一种比较方法,该领域将受益于包括该小组其他成员的信息,像海参(Holothuroids),对其发展的分子基础知之甚少。这里,我们回顾了产卵和培养方法,可用的形态学和分子信息,以及海参基因组和转录组资源的现状。为了使更广泛的社区可以访问该系统,我们讨论海参胚胎和幼虫如何成为一个强大的系统来解决evo-devo中的悬而未决的问题,包括了解双边结构的起源。
    A challenge for evolutionary developmental (evo-devo) biology is to expand the breadth of research organisms used to investigate how animal diversity has evolved through changes in embryonic development. New experimental systems should couple a relevant phylogenetic position with available molecular tools and genomic resources. As a phylum of the sister group to chordates, echinoderms extensively contributed to our knowledge of embryonic patterning, organ development and cell-type evolution. Echinoderms display a variety of larval forms with diverse shapes, making them a suitable group to compare the evolution of embryonic developmental strategies. However, because of the laboratory accessibility and the already available techniques, most studies focus on sea urchins and sea stars mainly. As a comparative approach, the field would benefit from including information on other members of this group, like the sea cucumbers (holothuroids), for which little is known on the molecular basis of their development. Here, we review the spawning and culture methods, the available morphological and molecular information, and the current state of genomic and transcriptomic resources on sea cucumbers. With the goal of making this system accessible to the broader community, we discuss how sea cucumber embryos and larvae can be a powerful system to address the open questions in evo-devo, including understanding the origins of bilaterian structures.
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