diagnostic test performance

  • 文章类型: Journal Article
    贫血是全球公共卫生问题,以39.8%的速度影响发展中国家和工业化国家。它由低血红蛋白浓度定义,贫血的严重程度因年龄而异:<11g/dL(6-59个月),<11.5g/dL(5-11年),和<12g/dL(12-14岁)。
    本研究评估了Mentzer指数在区分缺铁性贫血和地中海贫血性状方面的可靠性。
    总共434名儿童(≤16岁)接受了先前筛查的小细胞血症(MCV<80FL)和铁图谱的血红蛋白电泳。排除患有其他血液学疾病的儿童。
    在434个孩子中,181人被诊断患有地中海贫血,345人患有缺铁性贫血。Mentzer指数对β-地中海贫血的敏感性为74%,特异性为63%,对缺铁性贫血的敏感性为61%,特异性为36%。β-地中海贫血性状组的阴性预测值最高(98%),缺铁性贫血的阳性预测值最高(79%)。
    我们的研究,这与以前的文献是一致的,这表明Mentzer指数在区分沙特阿拉伯儿童缺铁性贫血和地中海贫血特征方面并不十分可靠。
    UNASSIGNED: Anemia is a global public health concern, affecting both developing and industrialized countries at a rate of 39.8%. It is defined by low hemoglobin concentration, and anemia varies in severity based on age: <11 g/dL (6-59 months), <11.5 g/dL (5-11 years), and < 12 g/dL (12-14 years).
    UNASSIGNED: This study evaluates the Mentzer index\'s reliability in differentiating iron deficiency anemia from the thalassemia trait.
    UNASSIGNED: A total of 434 children (≤16 years) with hemoglobin electrophoresis previously screened for microcytosis (MCV <80 FL) and an iron profile were included. Children with other hematological conditions were excluded.
    UNASSIGNED: Out of 434 children, 181 were diagnosed with thalassemia, and 345 had iron deficiency anemia. The Mentzer index showed 74% sensitivity and 63% specificity for the beta-thalassemia trait, with 61% sensitivity and 36% specificity for iron deficiency anemia. The beta-thalassemia trait group had the highest negative predictive value (98%), while iron deficiency anemia had the highest positive predictive value (79%).
    UNASSIGNED: Our study, which is consistent with previous literature, suggests that the Mentzer index is not highly reliable in distinguishing iron deficiency anemia from the thalassemia trait among children in Saudi Arabia.
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  • 文章类型: Journal Article
    目的:线印迹(LB)广泛用于肌炎抗体检测。然而,对疑似特发性炎症性肌病(IIM)患者的阳性预测值(PPV)的研究,这与神经肌肉临床医生特别相关,缺乏。我们旨在确定疑似IIM患者肌炎抗体LB测试的PPV,并检查PPV是否受到抗体阳性强度的显著影响。
    方法:这是一项对2019年3月至2022年8月期间因疑似IIM而接受肌炎抗体LB检测的患者的回顾性研究。
    结果:在接受疑似IIM检测且肌炎抗体LB结果阳性的70例患者中,43(61%)为女性,中位年龄为61岁(范围:10-83岁)。44人被归类为真阳性,产生63%的PPV。弱阳性肌炎抗体结果患者的PPV(14/30,47%)明显低于中度阳性或强阳性肌炎抗体结果患者的PPV(30/40,75%)(p=.02)。
    结论:我们的研究发现,疑似IIM患者的肌炎抗体LB检测具有适度的PPV,强调需要在所有可用的临床和辅助测试数据的背景下进行抗体解释,以避免误诊。结果为弱阳性的患者中PPV的显着降低强调了此类患者中临床相关性的特别重要性。需要进一步研究各种LB用于肌炎抗体检测的诊断性能,以告知其在临床实践中的解释。
    OBJECTIVE: Line blot (LB) is in widespread use for myositis antibody detection. Yet, studies of its positive predictive value (PPV) in patients with suspected idiopathic inflammatory myopathy (IIM), which would be of particular relevance to neuromuscular clinicians, are lacking. We aimed to determine the PPV of myositis antibody LB testing in patients with suspected IIM, and examine whether PPV was significantly impacted by intensity of antibody positivity.
    METHODS: This was a retrospective study of patients who underwent myositis antibody LB testing for suspected IIM between March 2019 and August 2022.
    RESULTS: Of 70 patients who underwent testing for suspected IIM and had positive myositis antibody LB results, 43 (61%) were female and the median age was 61 years (range: 10-83 years). Forty-four were classified as true-positives, yielding a PPV of 63%. The PPV of patients with weak-positive myositis antibody results (14/30, 47%) was significantly lower than the PPV of patients with moderate-positive or strong-positive myositis antibody results (30/40, 75%) (p = .02).
    CONCLUSIONS: Our study found that myositis antibody LB testing in patients with suspected IIM had a modest PPV, underscoring the need for antibody interpretation in the context of all available clinical and ancillary test data to avoid misdiagnosis. The significantly lower PPV in patients with weak-positive results emphasizes the particular importance of clinical correlation in such patients. Further study into the diagnostic performance of various LBs for myositis antibody detection is needed to inform their interpretation in clinical practice.
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  • 文章类型: Journal Article
    血浆淀粉样β(Aβ)和tau蛋白正在成为阿尔茨海默病(AD)的生物标志物。然而,存在许多具有可变测试性能的测定法,强调需要进行比较评估,以确定未来在AD中使用的最有效的检测方法,并应用于相同生物标志物可能有用的其他环境,即,脑淀粉样血管病(CAA)。CAA是一种进行性脑血管疾病,其特征是皮质和软脑膜血管中Aβ40和Aβ42的沉积。AD的新型免疫疗法可以诱导类似于CAA相关炎症的淀粉样蛋白相关成像异常。很少有研究评估CAA中的血浆生物标志物。识别CAA特征可以促进诊断,预后,以及对新兴免疫疗法的AD患者进行更安全的选择。这篇综述评估了比较血浆生物标志物技术在AD和脑血管和CAA的血浆生物标志物谱中的诊断测试性能的研究;它还讨论了CAA中血浆生物标志物研究的新假设和未来途径。
    Plasma amyloid beta (Aβ) and tau are emerging as accessible biomarkers for Alzheimer\'s disease (AD). However, many assays exist with variable test performances, highlighting the need for a comparative assessment to identify the most valid assays for future use in AD and to apply to other settings in which the same biomarkers may be useful, namely, cerebral amyloid angiopathy (CAA). CAA is a progressive cerebrovascular disease characterized by deposition of Aβ40 and Aβ42 in cortical and leptomeningeal vessels. Novel immunotherapies for AD can induce amyloid-related imaging abnormalities resembling CAA-related inflammation. Few studies have evaluated plasma biomarkers in CAA. Identifying a CAA signature could facilitate diagnosis, prognosis, and a safer selection of patients with AD for emerging immunotherapies. This review evaluates studies that compare the diagnostic test performance of plasma biomarker techniques in AD and cerebrovascular and plasma biomarker profiles of CAA; it also discusses novel hypotheses and future avenues for plasma biomarker research in CAA.
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  • 文章类型: Journal Article
    背景:用于检测SARS-CoV-2蛋白抗原(Ag)的免疫测定通常用于诊断COVID-19。最广泛使用的测试是侧流测定,其在大约15分钟内产生结果用于在护理点诊断。更高的吞吐量,还开发了基于实验室的SARS-CoV-2Ag检测方法。市售的SARS-CoV-2Ag检测试验数量迅速增加,COVID-19诊断文献也是如此。美国传染病学会(IDSA)召集了一个专家小组,对文献进行了系统的审查,并制定了与SARS-CoV-2Ag测试相关的最佳实践指南。该指南是对IDSA制定的一系列不断更新的COVID-19诊断指南中的第三项的更新。
    目的:IDSA的目标是制定基于证据的建议或帮助临床医生的建议,临床实验室,病人,公共卫生当局,与在医疗和非医疗环境中最佳使用SARS-CoV-2Ag测试相关的决策的管理者和决策者。
    方法:传染病临床医生的多学科小组,临床微生物学家和专家在系统文献综述中确定并优先考虑与使用SARS-CoV-2Ag测试相关的临床问题。相关审查,同行评审的已发表文献进行到2022年4月1日.建议评估的分级,使用开发和评估(GRADE)方法来评估证据的确定性并提出测试建议。
    结果:专家组提出了十项诊断建议。这些建议解决了有症状和无症状个体的Ag测试,并评估了单次与重复测试策略。
    结论:与核酸扩增检测(NAAT)相比,美国食品药品监督管理局(FDA)的SARS-CoV-2Ag检测与紧急使用授权(EUA)相比具有高特异性和低至中等敏感性。Ag测试灵敏度取决于症状的存在或不存在,在有症状的患者中,症状发作后的测试时间。相比之下,Ag测试具有很高的特异性,and,在大多数情况下,阳性Ag结果可以在没有确认的情况下采取行动。即时测试的结果与实验室测试的结果相当,和观察到的或未观察到的自我收集的标本进行测试产生类似的结果。建模表明,与一次测试相比,重复Ag测试增加了灵敏度,但没有经验数据可以解释这个问题。基于这些观察,快速RT-PCR或基于实验室的NAAT仍然是诊断SARS-CoV-2感染的首选测试方法。然而,当及时的分子检测不容易获得或在逻辑上不可行时,Ag检测有助于识别SARS-CoV-2感染的个体。数据不足以就Ag检测指导COVID-19患者从隔离中释放的实用性提出建议。支持使用Ag测试的可用证据的总体质量被分级为非常低至中等。
    Immunoassays designed to detect SARS-CoV-2 protein antigens (Ag) are commonly used to diagnose COVID-19. The most widely used tests are lateral flow assays that generate results in approximately 15 minutes for diagnosis at the point-of-care. Higher throughput, laboratory-based SARS-CoV-2 Ag assays have also been developed. The number of commercially available SARS-CoV-2 Ag detection tests has increased rapidly, as has the COVID-19 diagnostic literature. The Infectious Diseases Society of America (IDSA) convened an expert panel to perform a systematic review of the literature and develop best-practice guidance related to SARS-CoV-2 Ag testing. This guideline is an update to the third in a series of frequently updated COVID-19 diagnostic guidelines developed by the IDSA. IDSA\'s goal was to develop evidence-based recommendations or suggestions that assist clinicians, clinical laboratories, patients, public health authorities, administrators, and policymakers in decisions related to the optimal use of SARS-CoV-2 Ag tests in both medical and nonmedical settings. A multidisciplinary panel of infectious diseases clinicians, clinical microbiologists, and experts in systematic literature review identified and prioritized clinical questions related to the use of SARS-CoV-2 Ag tests. A review of relevant, peer-reviewed published literature was conducted through 1 April 2022. Grading of Recommendations Assessment, Development, and Evaluation (GRADE) methodology was used to assess the certainty of evidence and make testing recommendations. The panel made 10 diagnostic recommendations that address Ag testing in symptomatic and asymptomatic individuals and assess single versus repeat testing strategies. US Food and Drug Administration (FDA) SARS-CoV-2 Ag tests with Emergency Use Authorization (EUA) have high specificity and low to moderate sensitivity compared with nucleic acid amplification testing (NAAT). Ag test sensitivity is dependent on the presence or absence of symptoms and, in symptomatic patients, on timing of testing after symptom onset. In most cases, positive Ag results can be acted upon without confirmation. Results of point-of-care testing are comparable to those of laboratory-based testing, and observed or unobserved self-collection of specimens for testing yields similar results. Modeling suggests that repeat Ag testing increases sensitivity compared with testing once, but no empirical data were available to inform this question. Based on these observations, rapid RT-PCR or laboratory-based NAAT remain the testing methods of choice for diagnosing SARS-CoV-2 infection. However, when timely molecular testing is not readily available or is logistically infeasible, Ag testing helps identify individuals with SARS-CoV-2 infection. Data were insufficient to make a recommendation about the utility of Ag testing to guide release of patients with COVID-19 from isolation. The overall quality of available evidence supporting use of Ag testing was graded as very low to moderate.
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  • 文章类型: Journal Article
    随着宫颈癌筛查从细胞学转向人乳头瘤病毒(HPV)检测,一个主要问题涉及验证更多的HPV检测。近年来,一些HPV检测在中国用于临床表现验证。这项研究的目的是探讨BD的清晰度(Becton,DickinsonandCompany)HPV测定与Rochecobas(Roche分子系统)HPV测定不同,使用944个宫颈样本确定,包括588个测序结果。在核酸检测准确性验证中,检测HPV16(κ=0.93,95%置信区间[CI]:0.89-0.97)和HPV18(κ=0.90,95%CI:0.83-0.97),与其他12种高风险类型(HPV31/33/35/39/45/51/52/56/58/59/66/68,κ=0.79,95%CI:0.75-0.83)非常一致。Onclarity和cobas之间的HPVDNA检测的总体一致性非常好(κ=0.7755)。在Oncaricity和cobas之间观察到≥CIN2敏感性没有差异(均为96.5%),而≥CIN2特异性用于检测Oncarcity(16.6%,95%CI:13.7-19.9)高于cobas(11.5%,95%CI:9.1-14.5)。在中国妇女的宫颈疾病检测中,与cobas相比,Oncarcity表现出可比的筛查性能和分诊效率。
    As cervical cancer screening shifts from cytology to human papillomavirus (HPV) testing, a major issue involves validating more HPV tests. In recent years, some HPV tests are used for clinical performance verification in China. The purpose of this study was to explore whether the BD Onclarity (Becton, Dickinson and Company)HPV assay differs from the Roche cobas (Roche Molecular Systems)HPV assay, as determined using 944 cervical samples, including 588 with sequencing results. In the nucleic acid assay accuracy verification, the assays showed excellent concordance for detection of HPV16 (κ = 0.93, 95% confidence interval [CI]: 0.89-0.97) and HPV18 (κ = 0.90, 95% CI: 0.83-0.97), and very good concordance for the 12 other high-risk types (HPV31/33/35/39/45/51/52/56/58/59/66/68, κ = 0.79, 95% CI: 0.75-0.83). The overall agreement for HPV DNA detection between Onclarity and cobas was very good (κ = 0.7755). No difference for ≥CIN2 sensitivity was observed between Onclarity and cobas (both 96.5%), whereas the ≥CIN2 specificity for detection of Onclarity (16.6%, 95% CI: 13.7-19.9) was higher than that of cobas (11.5%, 95% CI: 9.1-14.5). Onclarity exhibited comparable screening performance and triage efficiency compared to cobas in the detection of cervical disease in Chinese women.
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  • 文章类型: Journal Article
    干扰素-γ(IFN-γ)测定和单次比较宫颈皮肤试验(SCITT)用于估计全球牛结核病(bTB)的患病率。bTB的患病率估计,由牛分枝杆菌引起的,在许多撒哈拉以南非洲(SSA)牛群中,它们的量化程度很低。此外,在bTB发病机理的不同阶段和不同的牛种群中,死前诊断性能可能有所不同。在这项研究中,我们的目的是探讨IFN-γ测定和SCITT测试之间的协议和分歧的水平,以及分歧的驱动因素,在自然感染的非洲牛群中。In,2013年,在喀麦隆使用分层聚类横断面研究对牧牛种群进行了采样。在西北地区(NWR)和维纳分部(VIN)共采样了100只牧牛群,共1,448头牛。收集个体动物数据和畜群水平数据,使用IFN-γ测定和SCITT对动物进行筛选。血清学ELISA用于检测免疫抑制共感染的暴露。协议分析用于比较两种bTB诊断测试之间的性能,并开发了多变量混合效应逻辑回归模型(MLR)来研究IFN-γ测定和SCITT二元分歧的两种形式。使用科恩κ统计量的最佳协议,在SCITT(>2mm)和IFN-γ测定之间,暗示着NWR[κ=0.42(95CI:0.31-0.53)]和VIN[κ=0.33(95%CI:0.18-0.47)]的“中等程度”一致。主要的测试分歧是动物在IFN-γ测定中测试为阳性,而在SCITT中测试为阴性。从MLR建模中,成人(成人OR:7.57;老年人OR=7.21),女性(OR=0.50),牛白血病(OR=2.30),和副结核阳性(OR=6.54)与IFN-γ阳性/SCITT阴性分歧相关。调查SCITT阳性和IFN-γ阴性的诊断测试分歧的子集也确定成年人(成人OR=15.74;老年人OR=9.18)与IFN-γ阴性/SCITT阳性分歧相关。我们证明,单独或联合使用IFN-γ测定和SCITT可导致bTB患病率估计值的较大差异。考虑到动物水平因素与IFN-γ测定和SCITT之间的分歧在本研究中,未来的工作应进一步研究它们对诊断测试性能的影响,以开发改进SSA患病率估计的方法.
    The interferon-gamma (IFN-γ) assay and single comparative cervical skin test (SCITT) are used to estimate bovine tuberculosis (bTB) prevalence globally. Prevalence estimates of bTB, caused by Mycobacterium bovis, are poorly quantified in many Sub-Saharan African (SSA) cattle populations. Furthermore, antemortem diagnostic performance can vary at different stages of bTB pathogenesis and in different cattle populations. In this study, we aim to explore the level of agreement and disagreement between the IFN-γ assay and SCITT test, along with the drivers for disagreement, in a naturally infected African cattle population. In, 2013, a pastoral cattle population was sampled using a stratified clustered cross-sectional study in Cameroon. A total of 100 pastoral cattle herds in the North West Region (NWR) and the Vina Division (VIN) were sampled totalling 1,448 cattle. Individual animal data and herd-level data were collected, and animals were screened using both the IFN-γ assay and SCITT. Serological ELISAs were used to detect exposure to immunosuppressing co-infections. Agreement analyses were used to compare the performance between the two bTB diagnostic tests, and multivariable mixed-effects logistic regression models (MLR) were developed to investigate the two forms of IFN-γ assay and SCITT binary disagreement. Best agreement using the Cohen\'s κ statistic, between the SCITT (>2 mm) and the IFN-γ assay implied a \'fair-moderate\' agreement for the NWR [κ = 0.42 (95%CI: 0.31-0.53)] and \'poor-moderate\' for the VIN [κ = 0.33 (95% CI: 0.18-0.47)]. The main test disagreement was the animals testing positive on the IFN-γ assay and negative by the SCITT. From MLR modeling, adults (adults OR: 7.57; older adults OR = 7.21), females (OR = 0.50), bovine leucosis (OR = 2.30), and paratuberculosis positivity (OR = 6.54) were associated with IFN-γ-positive/SCITT-negative disagreement. Subsets to investigate diagnostic test disagreement for being SCITT-positive and IFN-γ-negative also identified that adults (adults OR = 15.74; older adults OR = 9.18) were associated with IFN-γ-negative/SCITT-positive disagreement. We demonstrate that individual or combined use of the IFN-γ assay and SCITT can lead to a large variation in bTB prevalence estimates. Considering that animal level factors were associated with disagreement between the IFN-γ assay and SCITT in this study, future work should further investigate their impact on diagnostic test performance to develop the approaches to improve SSA prevalence estimates.
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  • 文章类型: Journal Article
    自1948年以来,Shannon理论的信息建模方法在信息起着关键作用的几个领域得到了广泛的应用,这远远超出了他们最初设想的范围,即在噪声信道上的数据压缩和纠错。在其他用途中,自1970年代以来,这些方法已应用于医学诊断的广泛领域,量化诊断信息,为了评估诊断测试性能,也可用作图像处理和配准的技术工具。这篇综述说明了在评估诊断测试的准确性和评估者之间的协议方面的主要贡献,专注于诊断测试性能测量和配对协议评估。这项工作也提出了最近的统一,连贯,希望,最终的信息理论方法来处理患者之间涉及的信息流,为评估疾病状态而进行的诊断测试,和正在检查测试结果的评估者。通过考虑两个案例研究来评估该方法:第一个与评估前列腺癌有关;第二个涉及COVID-19检测的快速检测质量。
    Since 1948, Shannon theoretic methods for modeling information have found a wide range of applications in several areas where information plays a key role, which goes well beyond the original scopes for which they have been conceived, namely data compression and error correction over a noisy channel. Among other uses, these methods have been applied in the broad field of medical diagnostics since the 1970s, to quantify diagnostic information, to evaluate diagnostic test performance, but also to be used as technical tools in image processing and registration. This review illustrates the main contributions in assessing the accuracy of diagnostic tests and the agreement between raters, focusing on diagnostic test performance measurements and paired agreement evaluation. This work also presents a recent unified, coherent, and hopefully, final information-theoretical approach to deal with the flows of information involved among the patient, the diagnostic test performed to appraise the state of disease, and the raters who are checking the test results. The approach is assessed by considering two case studies: the first one is related to evaluating extra-prostatic cancers; the second concerns the quality of rapid tests for COVID-19 detection.
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  • 文章类型: Journal Article
    这项荟萃分析的目的是分析外周动脉眼压测定(PAT)和多导睡眠图(PSG)研究之间呼吸暂停低通气指数(AHI)测定的一致性。
    从研究报告的Bland-Altman图提取的平均AHI偏差和标准偏差在荟萃分析中汇总,然后使用PSGAHI作为参考,通过PAT计算AHI确定中极限一致性的百分比误差。使用个体参与者数据(在研究中报告)计算Cohen的kappa,以评估PSG和PAT对睡眠呼吸暂停严重程度的一致性,并使用PSGAHI作为参考,计算PAT在不同AHI阈值下的敏感性和特异性。
    来自17项研究和1,318名参与者(均同时接受PSG并使用WatchPAT设备),合并平均值AHI偏差为0.30(标准误差[SE],0.74),计算出WatchPATAHI百分比误差为230%。PSG和WatchPAT研究对没有睡眠呼吸暂停的患者进行分类的CohenKappa协议的荟萃分析,温和,中度,或严重的睡眠呼吸暂停严重程度为0.45(SE,0.06),0.29(SE,0.05),0.25(SE,0.07),和0.64(SE,0.05),分别。在AHI阈值为5、15和30个事件/h时,WatchPAT研究显示,合并的敏感性和特异性分别为94.11%和43.47%,92.21%和72.39%,74.11%和87.10%,分别。在任何AHI阈值下,似然比均不显着。
    这项荟萃分析的结果表明,WatchPAT和PSG测量AHI之间存在临床上显著的不一致,通过PAT研究,严重的睡眠呼吸暂停严重程度错误分类,和较差的诊断测试性能。
    IftikharIH,FinchCE,ShahAS,奥甘斯坦CA,IoachimescuOC.外周动脉眼压测定诊断测试性能的荟萃分析。JClinSleepMed.2022年;18(4):1093-1102。
    The objective of this meta-analysis was to analyze agreement in apnea-hypopnea index (AHI) determination between peripheral arterial tonometry (PAT) and polysomnography (PSG) studies.
    Mean AHI bias and standard deviation extracted from Bland-Altman plots reported in studies were pooled in a meta-analysis, which was then used to calculate percentage errors of limit agreement in AHI determination by PAT using PSG AHI as the reference. Individual participant data (where reported in studies) were used to compute Cohen\'s kappa to assess agreement between PSG and PAT on sleep apnea severity and for computing the sensitivity and specificity of PAT at different AHI thresholds using PSG AHI as the reference.
    From 17 studies and 1,318 participants (all underwent simultaneous PSG and use of the WatchPAT device), a pooled mean AHI bias of 0.30 (standard error [SE], 0.74) and a WatchPAT AHI percentage error of 230% was calculated. The meta-analysis of Cohen\'s kappa for agreement between PSG and WatchPAT studies for classifying patients with no sleep apnea, mild, moderate, or severe sleep apnea severity was 0.45 (SE, 0.06), 0.29 (SE, 0.05), 0.25 (SE, 0.07), and 0.64 (SE, 0.05), respectively. At AHI thresholds of 5, 15 and 30 events/h, WatchPAT studies showed pooled sensitivities and specificities of 94.11% and 43.47%, 92.21% and 72.39%, and 74.11% and 87.10%, respectively. Likelihood ratios were not significant at any AHI threshold.
    The results of this meta-analysis suggest clinically significant discordance between WatchPAT and PSG measurements of AHI, significant sleep apnea severity misclassification by PAT studies, and poor diagnostic test performance.
    Iftikhar IH, Finch CE, Shah AS, Augunstein CA, Ioachimescu OC. A meta-analysis of diagnostic test performance of peripheral arterial tonometry studies. J Clin Sleep Med. 2022;18(4):1093-1102.
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  • 文章类型: Journal Article
    Introduction.不断发展的SARS-CoV-2冠状病毒大流行对临床诊断服务提出了一系列挑战。当公共卫生需求增加时,部署在中央实验室之外的许多专有PCR平台的规模化能力有限。我们着手开发和验证用于偏远地区COVID-19诊断的开放平台移动实验室,随后进行现场试验。差距声明。在西澳大利亚州,分子诊断支持仅限于近护理点设备。因此,我们的目标是在COVID-19大流行的背景下以可快速部署的形式展示开放平台能力。方法论。我们比较,选择并验证了SARS-CoV-2RT-PCR测定的成分,以建立便携式分子诊断实验室。PCR检测设备的优化组合,确定了区域实验室按照国家标准运行所需的试剂和消耗品。这包括RNA提取和纯化(QuickGene-480,Kurabo,Japan),双重RT-PCR检测(LogixSmartCOVID-19,联合诊断,美国),迈拉液体处理机器人(生物分子系统,澳大利亚)和磁感应热循环仪(MIC,生物分子系统)。结果95%和99%的检出限分别为1.01拷贝μl-1(每个反应5.05拷贝)和2.80拷贝μl-1(每个反应14.00拷贝)。联合诊断测定扩增了SARS-CoV-1和-2RNA,但没有显示其他交叉反应性。定性结果与参考实验室SARS-CoV-2测定一致(灵敏度100%[95%CI96.48-100%],特异性100%[95%CI96.52-100%])。在现场试验中,实验室在到达现场后一小时内就开始运作,可以同时处理多达36个样品,在收到样本后的两个半小时内产生结果,在为期1周的部署中,连续6次运行表现良好。结论。我们的移动实验室能够对增加的测试需求做出自适应响应,与许多专有的即时PCR系统不同,如果基因靶标发生变化或试剂供应链失败,则使用替代测定法进行快速替代。我们设想将此RT-PCR检测方法作为备用功能,以满足公共卫生应急操作指导下的不同区域测试需求。
    Introduction. The evolving SARS-CoV-2 coronavirus pandemic presents a series of challenges to clinical diagnostic services. Many proprietary PCR platforms deployed outside centralised laboratories have limited capacity to upscale when public health demands increase. We set out to develop and validate an open-platform mobile laboratory for remote area COVID-19 diagnosis, with a subsequent field trial.Gap Statement. In regional Western Australia, molecular diagnostic support is limited to near point-of-care devices. We therefore aimed to demonstrate open-platform capability in a rapidly deployable format within the context of the COVID-19 pandemic.Methodology. We compared, selected and validated components of a SARS-CoV-2 RT-PCR assay in order to establish a portable molecular diagnostics laboratory. The optimal combination of PCR assay equipment, reagents and consumables required for operation to national standards in regional laboratories was identified. This comprised RNA extraction and purification (QuickGene-480, Kurabo, Japan), a duplex RT-PCR assay (Logix Smart COVID-19, Co-Diagnostics, USA), a Myra liquid handling robot (Biomolecular Systems, Australia) and a magnetic induction thermal cycler (MIC, Biomolecular Systems).Results The 95 and 99% limits of detection were 1.01 copies μl-1 (5.05 copies per reaction) and 2.80 copies μl-1 (14.00 copies per reaction) respectively. The Co-Diagnostics assay amplified both SARS-CoV-1 and -2 RNA but showed no other cross reactivity. Qualitative results aligned with the reference laboratory SARS-CoV-2 assay (sensitivity 100% [95 % CI 96.48-100%], specificity 100% [95% CI 96.52-100%]). In field trials, the laboratory was operational within an hour of arrival on-site, can process up to 36 samples simultaneously, produces results in two and a half hours from specimen reception, and performed well during six consecutive runs during a 1 week deployment.Conclusion. Our mobile laboratory enables an adaptive response to increased test demand, and unlike many proprietary point-of-care PCR systems, rapid substitution with an alternative assay if gene targets change or reagent supply chains fail. We envisage operation of this RT-PCR assay as a standby capability to meet varying regional test demands under public health emergency operations guidance.
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  • 文章类型: Journal Article
    慢性便秘是一种常见病,和失调排便是高达40%的病例的基础。建议使用肛门直肠测压来评估慢性便秘患者的协同排便障碍,但仍未达到标准化水平。我们旨在评估肛门直肠测压的诊断准确性并确定最佳测试参数。
    我们对诊断测试准确性进行了系统评价和荟萃分析,包括慢性便秘患者的队列研究和协同排便失调患者或健康对照的病例对照研究。进行荟萃分析以确定汇总敏感性,特异性,和曲线下面积(AUC),95%置信区间(CI)。
    共纳入15项研究,包括2140名患者。包括所有研究(估计最佳诊断准确性),AUC为0.78[95%CI0.72-0.82],摘要敏感度为79%[61%-90%],诊断协同排便障碍的总特异性为64%[44%-79%]。仅在队列研究中(估计真实世界的诊断准确性),AUC为0.72[0.66-0.77],综合敏感度为86%[64%-95%],总结特异性为49%[30%-68%]。采用三次连续的模拟排便尝试将灵敏度提高到94%。利用空气吹入的第四模拟排便操作可以提高准确性。测量肛门直肠压力以识别复杂的协同失调模式并不能提高仅肛门压力测量的现实诊断准确性。压力测量系统的选择不会影响诊断准确性。
    根据伦敦共识方案的当前迭代(三个模拟排便尝试测量肛门松弛),肛门直肠测压在评估协同排便障碍中的作用似乎有限。该协议的未来迭代可以提高诊断准确性。
    Chronic constipation is a common condition, and dyssynergic defecation underlies up to 40% of cases. Anorectal manometry is recommended to assess for dyssynergic defecation among chronically constipated patients but remains poorly standardized. We aimed to evaluate the diagnostic accuracy of anorectal manometry and determine optimal testing parameters.
    We performed a systematic review with meta-analysis of diagnostic test accuracy including cohort studies of chronically constipated patients and case-control studies of patients with dyssynergic defecation or healthy controls. Meta-analysis was performed to determine summary sensitivity, specificity, and area under the curve (AUC) with 95% confidence intervals (CI).
    A total of 15 studies comprising 2140 patients were included. Including all studies (estimating optimal diagnostic accuracy), the AUC was 0.78 [95% CI 0.72-0.82], summary sensitivity was 79% [61%-90%], and summary specificity was 64% [44%-79%] to diagnose dyssynergic defecation. In cohort studies only (estimating real-world diagnostic accuracy), the AUC was 0.72 [0.66-0.77], summary sensitivity was 86% [64%-95%], and summary specificity was 49% [30%-68%]. Employing three consecutive simulated defecation attempts improved sensitivity to 94%. A fourth simulated defecation maneuver with air insufflation may improve accuracy. Measuring anorectal pressures to identify complex dyssynergic patterns did not improve real-world diagnostic accuracy estimates over anal pressure measurement alone. Choice of manometry system did not impact diagnostic accuracy.
    Following the current iteration of the London consensus protocol (three simulated defecation attempts measuring anal relaxation), the role of anorectal manometry in evaluating dyssynergic defecation appears limited. Future iterations of this protocol may improve diagnostic accuracy.
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