deep learning methods

深度学习方法
  • 文章类型: Journal Article
    我们提出了一种整合全基因组多组数据的创新策略,它通过利用多任务编码器从高维组学数据中导出的隐藏层特征来促进自适应合并。对八个基准癌症数据集的经验评估证实,我们提出的框架超过了癌症亚型的比较算法,提供优越的亚型结果。在这些子类型结果的基础上,我们建立了一个强大的管道来识别全基因组生物标志物,发掘195个重要的生物标志物。此外,我们进行了详尽的分析,以评估在癌症亚型分型过程中,在全基因组水平上每个组学和非编码区特征的重要性.我们的研究表明,组学和非编码区特征都会对癌症的发展和生存预后产生重大影响。这项研究强调了整合全基因组数据在癌症研究中的潜在和实际意义。证明了全面基因组表征的效力。此外,我们的发现为采用深度学习方法的多组学分析提供了有见地的观点.
    We present an innovative strategy for integrating whole-genome-wide multi-omics data, which facilitates adaptive amalgamation by leveraging hidden layer features derived from high-dimensional omics data through a multi-task encoder. Empirical evaluations on eight benchmark cancer datasets substantiated that our proposed framework outstripped the comparative algorithms in cancer subtyping, delivering superior subtyping outcomes. Building upon these subtyping results, we establish a robust pipeline for identifying whole-genome-wide biomarkers, unearthing 195 significant biomarkers. Furthermore, we conduct an exhaustive analysis to assess the importance of each omic and non-coding region features at the whole-genome-wide level during cancer subtyping. Our investigation shows that both omics and non-coding region features substantially impact cancer development and survival prognosis. This study emphasizes the potential and practical implications of integrating genome-wide data in cancer research, demonstrating the potency of comprehensive genomic characterization. Additionally, our findings offer insightful perspectives for multi-omics analysis employing deep learning methodologies.
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  • 文章类型: Journal Article
    近年来,深度学习方法与控制图结合使用,提高了对完整数据的监控效率。然而,由于时间和成本的限制,从可靠性寿命试验中获得的数据通常是I型对审查。传统的控制图对于监视这种类型的数据变得低效。因此,研究人员提出了各种具有条件期望值(CEV)或条件中位数(CM)的控制图,以提高正常和非正常条件下的右删失数据的效率。本研究将指数加权移动平均(EWMA)CEV和CM图与深度学习方法相结合,以提高伽马I型右删失数据的效率。给出了统计仿真和实际案例来评估所提出的方法,在各种偏度系数值和I型gamma右删失数据的审查率方面,它优于CEV和CM的传统EWMA图表。
    In recent years, deep learning methods have been widely used in combination with control charts to improve the monitoring efficiency of complete data. However, due to time and cost constraints, data obtained from reliability life tests are often type-I right censored. Traditional control charts become inefficient for monitoring this type of data. Thus, researchers have proposed various control charts with conditional expected values (CEV) or conditional median (CM) to improve efficiency for right-censored data under normal and non-normal conditions. This study combines the exponentially weighted moving average (EWMA) CEV and CM chart with deep learning methods to increase efficiency for gamma type-I right-censored data. A statistical simulation and a real-world case are presented to assess the proposed method, which outperforms the traditional EWMA charts with CEV and CM in various skewness coefficient values and censoring rates for gamma type-I right-censored data.
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  • 文章类型: Journal Article
    机器人康复干预的临床疗效取决于患者适当的神经肌肉募集。这项研究的第一个目的是评估使用监督机器学习技术来预测脑瘫(CP)患者在步行过程中踝关节外骨骼阻力下踝关节足底屈肌的神经肌肉募集。这项研究的第二个目标是在设计旨在改善的个性化生物反馈框架时利用足底屈肌募集的预测模型(即,增加)用户在有阻力行走时的参与度。首先,我们开发并训练了多层感知器(MLP),一种人工神经网络(ANN),利用专门从外骨骼的机载传感器中提取的特征,并显示85-87%的准确度,平均而言,从肌电图测量中预测肌肉募集。接下来,我们的参与者在接受来自在线MLP的个性化实时平面屈肌招募预测的视听生物反馈的同时,完成了步态训练.我们发现,与单独的抗性相比,增加生物反馈的抗性将足底屈肌募集增加了2416%。这项研究强调了在线机器学习框架在临床人群中提高机器人康复系统的有效性和交付的潜力。
    The clinical efficacy of robotic rehabilitation interventions hinges on appropriate neuromuscular recruitment from the patient. The first purpose of this study was to evaluate the use of supervised machine learning techniques to predict neuromuscular recruitment of the ankle plantar flexors during walking with ankle exoskeleton resistance in individuals with cerebral palsy (CP). The second goal of this study was to utilize the predictive models of plantar flexor recruitment in the design of a personalized biofeedback framework intended to improve (i.e., increase) user engagement when walking with resistance. First, we developed and trained multilayer perceptrons (MLPs), a type of artificial neural network (ANN), utilizing features extracted exclusively from the exoskeleton\'s onboard sensors, and demonstrated 85-87% accuracy, on average, in predicting muscle recruitment from electromyography measurements. Next, our participants completed a gait training session while receiving audio-visual biofeedback of their personalized real-time planar flexor recruitment predictions from the online MLP. We found that adding biofeedback to resistance elevated plantar flexor recruitment by 24 16% compared to resistance alone. This study highlights the potential for online machine learning frameworks to improve the effectiveness and delivery of robotic rehabilitation systems in clinical populations.
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  • 文章类型: Journal Article
    (1) Background: The aim of our research was to systematically review papers specifically focused on the hepatocellular carcinoma (HCC) diagnostic performance of DL methods based on medical images. (2) Materials: To identify related studies, a comprehensive search was conducted in prominent databases, including Embase, IEEE, PubMed, Web of Science, and the Cochrane Library. The search was limited to studies published before 3 July 2023. The inclusion criteria consisted of studies that either developed or utilized DL methods to diagnose HCC using medical images. To extract data, binary information on diagnostic accuracy was collected to determine the outcomes of interest, namely, the sensitivity, specificity, and area under the curve (AUC). (3) Results: Among the forty-eight initially identified eligible studies, thirty studies were included in the meta-analysis. The pooled sensitivity was 89% (95% CI: 87-91), the specificity was 90% (95% CI: 87-92), and the AUC was 0.95 (95% CI: 0.93-0.97). Analyses of subgroups based on medical image methods (contrast-enhanced and non-contrast-enhanced images), imaging modalities (ultrasound, magnetic resonance imaging, and computed tomography), and comparisons between DL methods and clinicians consistently showed the acceptable diagnostic performance of DL models. The publication bias and high heterogeneity observed between studies and subgroups can potentially result in an overestimation of the diagnostic accuracy of DL methods in medical imaging. (4) Conclusions: To improve future studies, it would be advantageous to establish more rigorous reporting standards that specifically address the challenges associated with DL research in this particular field.
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  • 文章类型: Journal Article
    深度学习的快速发展为使用LiDAR传感技术进行3D物体检测带来了新的方法。精度和推理速度性能的这些改进导致了显着的高性能和实时推理,这对自动驾驶来说尤其重要。然而,这些方法的发展压倒了这一领域的研究过程,因为新的方法,技术和软件版本导致不同的项目需求,规格和要求。此外,新方法带来的改进可能是由于更新版本的深度学习框架的改进,而不仅仅是模型架构的新颖性和创新性。因此,创建具有相同软件版本的框架变得至关重要,适应所有这些方法的规范和要求,并允许轻松引入新的方法和模型。提出了一个抽象实现的框架,新方法和模型的重用和构建。主要思想是促进最先进的(SoA)方法的表示,并同时通过重用鼓励新方法的实施,改进和创新拟议框架中的模块,它具有相同的软件规格,以便进行公平的比较。通过比较框架中具有相同软件规范和要求的模型,可以确定关键创新方法是否优于当前的SoA。
    The rapid development of deep learning has brought novel methodologies for 3D object detection using LiDAR sensing technology. These improvements in precision and inference speed performances lead to notable high performance and real-time inference, which is especially important for self-driving purposes. However, the developments carried by these approaches overwhelm the research process in this area since new methods, technologies and software versions lead to different project necessities, specifications and requirements. Moreover, the improvements brought by the new methods may be due to improvements in newer versions of deep learning frameworks and not just the novelty and innovation of the model architecture. Thus, it has become crucial to create a framework with the same software versions, specifications and requirements that accommodate all these methodologies and allow for the easy introduction of new methods and models. A framework is proposed that abstracts the implementation, reusing and building of novel methods and models. The main idea is to facilitate the representation of state-of-the-art (SoA) approaches and simultaneously encourage the implementation of new approaches by reusing, improving and innovating modules in the proposed framework, which has the same software specifications to allow for a fair comparison. This makes it possible to determine if the key innovation approach outperforms the current SoA by comparing models in a framework with the same software specifications and requirements.
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  • 文章类型: Journal Article
    电子废弃物的产生,也被称为电子垃圾,随着对电子产品的日益依赖,为了减少对环境的负面影响并实现可持续的工业过程,回收和再利用产品至关重要。人工智能和机器人技术的进步可以通过减少人类工人的工作量并使他们远离危险材料来帮助这项工作。然而,自主的人类运动/意图感知是电子垃圾再制造的主要障碍。为了弥补研究空白,这项研究将实验数据收集与深度学习模型相结合,以实现精确的反汇编任务识别。从22名参与者佩戴的惯性测量单元(IMU)收集了超过570,000帧的运动数据。还提出了一种新颖的基于序列的校正(SBC)算法,以进一步提高整体管道的精度。结果表明,模型(CNN,LSTM,和GoogLeNet)的总体准确率为88-92%。提出的SBC算法将准确率提高到95%。
    The production of electronic waste, also known as e-waste, has risen with the growing reliance on electronic products. To reduce negative environmental impact and achieve sustainable industrial processes, recovering and reusing products is crucial. Advances in AI and robotics can help in this effort by reducing workload for human workers and allowing them to stay away from hazardous materials. However, autonomous human motion/intention perception is a primary barrier in e-waste remanufacturing. To address the research gap, this study combined experimental data collection with deep learning models for accurate disassembly task recognition. Over 570,000 frames of motion data were collected from inertial measurement units (IMU) worn by 22 participants. A novel sequence-based correction (SBC) algorithm was also proposed to further improve the accuracy of the overall pipeline. Results showed that models (CNN, LSTM, and GoogLeNet) had an overall accuracy of 88-92%. The proposed SBC algorithm improved accuracy to 95%.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    动力下肢假肢装置可能成为截肢患者的有希望的选择。尽管已经提出了各种方法来产生类似于非残疾人的步态轨迹,实施这些控制方法仍然具有挑战性。目前尚不清楚这些方法是否提供了适当的,安全,和预期的直观运动。本文提出了残肢自主运动的直接映射(即,大腿)达到截肢肢体所需的阻抗参数(即膝盖和脚踝)。所提出的模型是从公开可用的生物力学数据集中完整肢体个体的步态轨迹中学习的,并用于控制假肢,而无需对网络进行后期调整。因此,所提出的方法不需要与截肢的个体进行训练时间,也不需要配置使用时间,它提供了一个非常相似的完整肢体的步态轨迹。对于初步测试,三名身体健全的受试者参加了旁路试验.所提出的模型以三个不同的步长实现了直观可靠的水平地面行走:自选,long-,和短步长。结果表明,具有不同传感器配置的完整基准数据可以直接用于训练模型以控制假肢。
    Powered lower-limb prosthetic devices may be becoming a promising option for amputation patients. Although various methods have been proposed to produce gait trajectories similar to those of non-disabled individuals, implementing these control methods is still challenging. It remains unclear whether these methods provide appropriate, safe, and intuitive locomotion as intended. This paper proposes the direct mapping of the voluntary movement of a residual limb (i.e., thigh) to the desired impedance parameters for amputated limbs (i.e., knee and ankle). The proposed model was learned from the gait trajectories of intact limb individuals from a publicly available biomechanics dataset, and was applied to control the prosthetic leg without post-tuning the network. Thus, the proposed method does not require training time with individuals with amputation nor configuration time for its use, and it provides a closely resembling gait trajectory of the intact limb. For preliminary testing, three able-bodied subjects participated in bypass tests. The proposed model accomplished intuitive and reliable level-ground walking at three different step lengths: self-selected, long-, and short-step lengths. The results indicate that intact benchmark data with different sensor configurations can be directly used to train the model to control prosthetic legs.
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  • 文章类型: Journal Article
    未经评估:长时间漏气是胸外科手术最常见的并发症。术中渗漏部位检测是降低渗漏相关术后并发症风险的第一步。
    UNASSIGNED:我们回顾性回顾了在我们机构接受肺切除术的患者的手术录像。在训练阶段,使用泄漏阳性内窥镜图像开发了基于深度学习的空气泄漏检测软件。在测试阶段,使用不同的数据集来评估我们针对每个预测框提出的应用.
    UNASSIGNED:对从70个手术中获得的总共110个原始捕获和标记的图像进行了预处理,用于训练数据集。测试数据集包含64个泄漏阳性位点和45个泄漏阴性位点。测试数据集从93次手术中获得,包括58名存在漏气的患者和35名不存在漏气的患者。在测试阶段,我们的软件检测泄漏部位的灵敏度和特异性分别为81.3%和68.9%,分别。
    UNASSIGNED:我们已经成功开发了基于深度学习的泄漏点检测应用程序,可用于放气的肺部。尽管当前版本仍然是具有有限训练数据集的原型,它是完全基于视觉信息的泄漏检测的新概念。
    UNASSIGNED: Prolonged air leak is the most common complication of thoracic surgery. Intraoperative leak site detection is the first step in decreasing the risk of leak-related postoperative complications.
    UNASSIGNED: We retrospectively reviewed the surgical videos of patients who underwent lung resection at our institution. In the training phase, deep learning-based air leak detection software was developed using leak-positive endoscopic images. In the testing phase, a different data set was used to evaluate our proposed application for each predicted box.
    UNASSIGNED: A total of 110 originally captured and labeled images obtained from 70 surgeries were preprocessed for the training data set. The testing data set contained 64 leak-positive and 45 leak-negative sites. The testing data set was obtained from 93 operations, including 58 patients in whom an air leak was present and 35 patients in whom an air leak was absent. In the testing phase, our software detected leak sites with a sensitivity and specificity of 81.3% and 68.9%, respectively.
    UNASSIGNED: We have successfully developed a deep learning-based leak site detection application, which can be used in deflated lungs. Although the current version is still a prototype with a limited training data set, it is a novel concept of leak detection based entirely on visual information.
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  • 文章类型: Journal Article
    基因表达数据是从基因数据集中提取有意义的隐藏信息的生物数据。基于基因表达水平的变化,该基因信息用于疾病诊断,尤其是在癌症治疗中。DNA微阵列是对特定类型癌症进行基因表达分类和预测癌症疾病的有效方法。由于计算能力的丰富,深度学习(DL)已成为医疗保健领域的一项广泛技术。基因表达数据集具有有限数量的样本,但具有大量的特征。基因表达数据集需要数据增强以克服基因数据中的维度问题。这是一种生成合成样本以增加数据多样性的技术。深度学习方法旨在以多维数组的形式学习和提取来自原始输入数据的特征。本文回顾了前馈神经网络(FFN)等深度学习技术的现有研究,卷积神经网络(CNN)通过基因表达数据分析,自动编码器(AE)和循环神经网络(RNN)用于癌症疾病及其类型的分类和预测。
    Gene Expression Data is the biological data to extract meaningful hidden information from the gene dataset. This gene information is used for disease diagnosis especially in cancer treatment based on the variations in gene expression levels. DNA microarray is an efficient method for gene expression classification and prediction of cancer disease for specific types of cancer. Due to the abundance of computing power, deep learning (DL) has become a widespread technique in the healthcare sector. The gene expression dataset has a limited number of samples but a large number of features. Data augmentation is needed for gene expression datasets to overcome the dimensionality problem in gene data. It is a technique to generating the synthetic samples to increase the diversity of data. Deep learning methods are designed to learn and extract the features that come from the raw input data in the form of multidimensional arrays. This paper reviews the existing research in deep learning techniques like Feed Forward Neural Network (FFN), Convolutional Neural Network (CNN), Autoencoder (AE) and Recurrent Neural Network (RNN) for the classification and prediction of cancer disease and its types through gene expression data analysis.
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