context-dependency

上下文依赖关系
  • 文章类型: Journal Article
    背景:假设地位不平等通过创造一种社会凝聚力侵蚀和社会比较加剧的环境来增加健康方面的社会经济不平等。这样的环境可引起全身性慢性炎症。尽管这些是社会流行病学中经常使用的解释,实证检验仍然很少见。
    方法:我们分析了来自苏格兰西部二十-07研究的数据。我们的样本包括499个小住宅区的1977年参与者。通过高敏C反应蛋白(hs-CRP;<10mg/L)测量系统性慢性炎症。使用人口普查数据创建了地区级别的地位不平等度量,并使用生态计量学测量了上下文级别的社会凝聚力。我们估计了具有社会经济地位(SEP)之间跨水平相互作用的线性多水平模型,地位不平等,社会凝聚力根据年龄和性别进行了调整。我们对邮政编码部门级别的主要分析是在三个较小的空间级别上重新估计的。
    结果:处于不利地位的SEP和处于有利地位的SEP之间的hs-CRP差异(0.806mg/L;p=0.063;[95CI:-0.044;1.656])在居住在大多数居民处于有利SEP地区的参与者中最高。在这些状态分布中,高社会凝聚力与hs-CRP较浅的社会经济梯度相关,低社会凝聚力与较陡的梯度相关.在SEP组合相等的地区或处于不利地位的SEP中的大多数居民,弱势和优势SEP之间hs-CRP的估计差异分别为-0.039mg/L(p=0.898;[95CI:0.644;0.566])和-0.257mg/L(p=0.568;[95CI:1.139;0.625]).在这些状态分布中,当社会凝聚力较高时,hs-CRP的梯度呈现更陡,而当社会凝聚力较低时,hs-CRP的梯度可能逆转.使用小于邮政编码扇区的区域级别时,结果大致一致。
    结论:生活在大多数居民处于优势SEP且社会凝聚力较低地区的参与者中,hs-CRP的不平等程度最大。在这些上下文特征的其他组合中,全身性慢性炎症的不平等无法检测到,甚至有可能逆转.
    Status inequality is hypothesised to increase socioeconomic inequalities in health by creating an environment in which social cohesion erodes and social comparisons intensify. Such an environment may cause systemic chronic inflammation. Although these are often-used explanations in social epidemiology, empirical tests remain rare.
    We analysed data from the West of Scotland Twenty-07 Study. Our sample consisted of 1977 participants in 499 small residential areas. Systemic chronic inflammation was measured by high-sensitivity C-reactive protein (hs-CRP; <10 mg/L). An area-level measurement of status inequality was created using census data and contextual-level social cohesion was measured applying ecometrics. We estimated linear multilevel models with cross-level interactions between socioeconomic position (SEP), status inequality, and social cohesion adjusted for age and gender. Our main analysis on postcode sector-level was re-estimated on three smaller spatial levels.
    The difference in hs-CRP between disadvantaged and advantaged SEPs (0.806 mg/L; p = 0.063; [95%CI: -0.044; 1.656]) was highest among participants living in areas where most residents were in advantaged SEPs. In these status distributions, high social cohesion was associated with a shallower socioeconomic gradient in hs-CRP and low social cohesion was associated with a steeper gradient. In areas with an equal mix of SEPs or most residents in disadvantaged SEPs, the estimated difference in hs-CRP between disadvantaged and advantaged SEPs was -0.039 mg/L (p = 0.898; [95%CI: 0.644; 0.566]) and -0.257 mg/L (p = 0.568; [95%CI: 1.139; 0.625]) respectively. In these status distributions, the gradient in hs-CRP appeared steeper when social cohesion was high and potentially reversed when social cohesion was low. Results were broadly consistent when using area-levels smaller than postcode sectors.
    Inequalities in hs-CRP were greatest among participants living in areas wherein a majority of residents were in advantaged SEPs and social cohesion was low. In other combinations of these contextual characteristics, inequalities in systemic chronic inflammation were not detectable or potentially even reversed.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    许多生态相互作用的结果位于纯积极和纯消极影响之间的连续体中。尽管在过去的几十年里,这个想法的受欢迎程度众所周知,随着交互结果的连续性的发生,调用了各种各样的交互,缺乏精确的理论处理导致其处理相当不准确和模糊。我们在这里开发了一个消费者资源模型来探索连续性的发生。该模型基于以下假设:个体相互作用事件的分布包括负面和正面的直接结果,随着频率的变化,对于至少一个相互作用的物种。我们的研究表明,互动结果的连续性仅通过改变单个事件的符号和影响而发生。连续体的确切形状取决于正面事件与负面事件的比例以及人均相互作用强度的相对大小。我们的模型表明,交互结果的连续性是大多数成对交互的关键属性,并且源于交互伙伴所扮演的可变角色。它构成了从生态相互作用的离散分类到连续空间的新视角的范式转变的一步。本文受版权保护。保留所有权利。
    The outcome of many ecological interactions lies somewhere along a continuum between pure positive and pure negative effects. Although the popularity of this idea has notoriously risen in the last decades, with the occurrence of continua in interaction outcomes invoked for a wide variety of interactions, the absence of a precise theoretical treatment has led to considerable inaccuracy and ambiguity in its treatment. We develop here a consumer-resource model to explore the occurrence of continua. This model is based on the assumption that the distribution of individual interaction events includes both negative and positive immediate outcomes, with variable frequencies, for at least one of the interacting species. Our study shows that continua in interaction outcomes happen just by varying the sign and impact of individual events. The exact shape of the continua depends on the proportion of positive versus negative events and the relative magnitude of per-capita interaction strengths. Our model shows that continua in interaction outcomes are a key property of most pairwise interactions and are originated from the variable roles played by the interacting partners. It constitutes a step forward in the paradigm change from discrete categorization of ecological interactions to a new perspective over a continuous space.
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  • 文章类型: Journal Article
    现代生物学的目标是开发基因型-表型(G→P)图,对基因组信息如何产生性状变异的预测性理解,这些性状变异构成了自然和管理社区的基础。随着微生物组研究的进展,然而,很明显,这些特征中的许多都是共生扩展的表型,不仅受宿主自身基因组编码的遗传变异控制,还有无数神秘共生体的基因组。因此,建立可靠的G→P图谱需要考虑许多相互作用的基因,甚至涉及共生的基因组。这里,我们在四个全基因组关联研究(GWAS)中使用了191个模型微生物共生体中华根瘤菌与两种基因型宿主苜蓿配对的自然发生的遗传变异,以确定关键共生扩展表型伴侣质量的基因组结构。或特定共生体基因型赋予宿主的健身益处,在环境背景和宿主基因型之内和之间。我们在根瘤菌基因组中定义了三个新的基因座类别,如果我们想建立可靠的伙伴质量G→P图,则必须考虑这些基因座;即,(i)其身份取决于环境的基因座,(ii)那些依赖于与根瘤菌相互作用的宿主基因型的,和(iii)在所有或大多数环境中可能很重要的通用基因座。重要性鉴于有关如何利用微生物组来改善宿主健康的研究迅速兴起,了解微生物遗传变异对宿主表型变异的贡献是当务之急,并且将使我们能够更好地预测影响宿主健康的共生扩展表型的进化(并更精确地选择)。我们在控制宿主生长的共生体基因座的身份和功能中发现了广泛的上下文依赖性,这使得预测在不同条件下确定共生结果的重要基因和途径更具挑战性。尽管存在这种上下文依赖性,我们还解析了在所有或大多数环境中可能很重要的一组核心通用基因座,因此,作为基因工程和未来共生共同进化研究的极好目标。
    A goal of modern biology is to develop the genotype-phenotype (G→P) map, a predictive understanding of how genomic information generates trait variation that forms the basis of both natural and managed communities. As microbiome research advances, however, it has become clear that many of these traits are symbiotic extended phenotypes, being governed by genetic variation encoded not only by the host\'s own genome, but also by the genomes of myriad cryptic symbionts. Building a reliable G→P map therefore requires accounting for the multitude of interacting genes and even genomes involved in symbiosis. Here, we use naturally occurring genetic variation in 191 strains of the model microbial symbiont Sinorhizobium meliloti paired with two genotypes of the host Medicago truncatula in four genome-wide association studies (GWAS) to determine the genomic architecture of a key symbiotic extended phenotype-partner quality, or the fitness benefit conferred to a host by a particular symbiont genotype, within and across environmental contexts and host genotypes. We define three novel categories of loci in rhizobium genomes that must be accounted for if we want to build a reliable G→P map of partner quality; namely, (i) loci whose identities depend on the environment, (ii) those that depend on the host genotype with which rhizobia interact, and (iii) universal loci that are likely important in all or most environments. IMPORTANCE Given the rapid rise of research on how microbiomes can be harnessed to improve host health, understanding the contribution of microbial genetic variation to host phenotypic variation is pressing, and will better enable us to predict the evolution of (and select more precisely for) symbiotic extended phenotypes that impact host health. We uncover extensive context-dependency in both the identity and functions of symbiont loci that control host growth, which makes predicting the genes and pathways important for determining symbiotic outcomes under different conditions more challenging. Despite this context-dependency, we also resolve a core set of universal loci that are likely important in all or most environments, and thus, serve as excellent targets both for genetic engineering and future coevolutionary studies of symbiosis.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    Once one abandons the ideal of value-free, impartial science, the question of how to distinguish biased from legitimately value-laden science arises. To approach this \"new demarcation problem\", I argue that one should distinguish different uses of \"bias\" in a first step: a narrow sense of bias as systematic deviation from the truth, and a wider sense that covers any kind of tendency impacting scientific reasoning. Secondly, the narrow sense exemplifies an ontological notion of bias, which understands bias in terms of a deviation from an impartial ideal outcome. I propose to replace it with an epistemic notion of bias, which understands biased research as research that we have good reasons to suspect could have been (done) systematically better. From a socio-epistemic perspective, such good reasons to expect better can be found in a lack of responsiveness to conventional standards and/or critical discourse in the scientific community. In short, bias in an epistemic sense consists in a deviation, not from truth but from current best practice. While this turns bias into something that is dependent on time and context, it allows for value-laden research to be unbiased, if there are no good reasons to expect this research to be better.
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  • 文章类型: Journal Article
    According to the stress gradient hypothesis (SGH), ecological interactions between organisms shift positively as environmental stress increases. In the case of associational resistance, habitat is modified to ameliorate stress, benefitting other organisms. The SGH is contentious due to conflicting evidence and theoretical perspectives, so we adopted a meta-analytic approach to determine if it is widely supported across a variety of contexts, including different kingdoms, ecosystems, habitats, interactions, stressors, and life history stages. We developed an extensive list of Boolean search criteria to search the published ecological literature and successfully detect studies that both directly tested the hypothesis, and those that were relevant but never mentioned it. We found that the SGH is well supported by studies that feature bacteria, plants, terrestrial ecosystems, interspecific negative interactions, adults, survival instead of growth or reproduction, and drought, fire, and nutrient stress. We conclude that the SGH is indeed a broadly relevant ecological hypothesis that is currently held back by cross-disciplinary communication barriers. More SGH research is needed beyond the scope of interspecific plant competition, and more SGH research should feature multifactor stress. There remains a need to account for positive interactions in scientific pursuits, such as associational resistance in tests of the SGH.
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  • 文章类型: Journal Article
    在具体认知辩论的背景下,先前已使用眼动追踪检测到运动动词相关速度信息的影响,功能磁共振成像(fMRI),和反应时间(RT)。后者,例如,由Wender和Weber(1982)实施,研究人员观察到,在形成句子内容的心理图像后,与与慢动作相关的句子相比,参与者在检测与快动作相关的句子中运动的速度更快。报告的速度效应是否与自动词汇语义检索过程相关,或者它们是否反映了更高的自上而下的认知过程,仍然是开放的。为了回答这个问题,本研究采用并进一步阐述了Wender和Weber(1982)的范式。在实验1中,消除了可视化指令。此外,刺激材料是根据所描述的运动的代理人操纵的(人类与对象运动),以确定表示的模态(视觉与motoric)。在实验2中,检测运动的任务被判断感觉的任务所取代。结果表明,提示进行心理意象并不是在这种运动速度范式中参与模态表示的前提,并且所涉及的表示“模态”是视觉的而不是运动的。然而,模态表示的参与取决于任务。因此,它们似乎不是运动动词方式不变语义表示的一部分。
    In the context of the embodied cognition debate, an effect of motion verb associated speed information has previously been detected using eye-tracking, functional magnetic resonance imaging (fMRI), and reaction times (RT). The latter, for instance, was implemented by Wender and Weber (1982), who observed that participants were faster in detecting motion in sentences associated with fast motion compared to sentences associated with slow motion after having formed mental images of the sentences\' content. It remains open whether the reported effects of speed are associated with automatic lexical-semantic retrieval processes or whether they reflect higher top-down cognitive processes. To answer this question, the paradigm by Wender and Weber (1982) was adopted and further elaborated in the present study. In Experiment 1 visualization instructions were eliminated. Additionally, the stimulus material was manipulated in regards to the agent of the described movement (human vs. object motion) in order to determine the representation\'s modality (visual vs. motoric). In Experiment 2, the task to detect motion was replaced by the task to judge sensicality. The results suggest that the prompt to perform mental imagery is not a precondition for the engagement of modal representations in this speed of motion paradigm and that the involved representations\' modality is visual rather than motoric. However, the modal representations\' involvement is dependent on the task. They thus do not seem to be part of the invariant semantic representation of manner of motion verbs.
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  • 文章类型: Journal Article
    发病率,急性髓系白血病(AML)的分子表现和结果受性别影响,但很少有人关注女性和男性患者之间与性别相关的分子和表型差异。虽然发病率增加和低风险通常与男性表型有关,FLT3内部串联重复(FLT3-ITD)突变和NPM1和DNMT3A的共突变在女性AML中的预后较差.这里,我们通过比较临床数据来研究性别与FLT3-ITD突变状态之间的关系,突变谱,四个队列的基因表达和离体药物敏感性:BeatAML,LAML-TCGA和两个独立的HOVON/SAKK队列,包括总共1755名AML患者。我们发现普遍存在的性别相关分子差异。FLT3-ITD共现,NPM1和DNMT3A突变在女性中代表过多,而FLT3-ITDs男性的特征在于RNA剪接和表观遗传修饰基因的额外突变。我们观察到多个白血病相关基因的不同表达以及不同的离体药物反应,暗示离散的功能特性。重要的是,仅在女性FLT3-ITD突变的AML中观察到显著的预后.因此,我们建议以性别调整的方式优化FLT3-ITD突变状态作为临床工具,并假设预后,通过纳入性别特异性考虑因素,可以改善AML治疗策略的预测和发展.
    Incidence, molecular presentation and outcome of acute myeloid leukaemia (AML) are influenced by sex, but little attention has been directed at untangling sex-related molecular and phenotypic differences between female and male patients. While increased incidence and poor risk are generally associated with a male phenotype, the poor prognostic FLT3 internal tandem duplication (FLT3-ITD) mutation and co-mutations with NPM1 and DNMT3A are overrepresented in female AML. Here, we have investigated the relationship between sex and FLT3-ITD mutation status by comparing clinical data, mutational profiles, gene expression and ex vivo drug sensitivity in four cohorts: Beat AML, LAML-TCGA and two independent HOVON/SAKK cohorts, comprising 1755 AML patients in total. We found prevalent sex-associated molecular differences. Co-occurrence of FLT3-ITD, NPM1 and DNMT3A mutations was overrepresented in females, while males with FLT3-ITDs were characterized by additional mutations in RNA splicing and epigenetic modifier genes. We observed diverging expression of multiple leukaemia-associated genes as well as discrepant ex vivo drug responses, suggestive of discrete functional properties. Importantly, significant prognostication was observed only in female FLT3-ITD-mutated AML. Thus, we suggest optimization of FLT3-ITD mutation status as a clinical tool in a sex-adjusted manner and hypothesize that prognostication, prediction and development of therapeutic strategies in AML could be improved by including sex-specific considerations.
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  • 文章类型: Journal Article
    植物群落的变化可能对生态系统碳(C)动态和长期C存量产生重大影响。然而,这些影响是如何由环境背景介导的,或者是如何在生态系统中变化的,目前还没有很好的理解。为了研究这个,我们在瑞典北部的30个森林湖泊岛屿上进行了长期植物去除实验,这些岛屿共同代表了土壤肥力和生态系统生产力的强大梯度。我们进行了22年的实验,测量了森林地面CO2交换以及地上和地下C存量,该实验涉及对北方森林林下的两个主要功能组的阶乘去除,即白质矮灌木和羽毛苔藓,在30个岛屿上。我们发现,长期清除灌木和苔藓会增加整个岛屿的森林地面净二氧化碳损失,并持续减少地下碳储量,而不论其生产力或土壤肥力如何。然而,我们确实看到了呼吸对灌木清除的上下文依赖性反应,因为清除仅增加了中等生产力岛上的呼吸。CO2交换和C库存对灌木去除的反应都比对苔藓去除的反应更强烈。在整个岛屿梯度上,灌木的去除一直降低了林地的初级生产力,但对呼吸没有影响,这表明,由清除引起的地下C损失是由减少的垃圾投入驱动的。横跨岛梯度,灌木的去除持续使土壤有机层中的碳储量减少0.8kgC/m2。我们的结果表明,植物功能群多样性对碳动态的影响在生产力和土壤肥力差异很大的对比生态系统中可以相对一致。这些发现强调了林下植被在森林C循环中的关键作用,并表明导致灌木和苔藓相对丰度变化的全球变化可能会影响北方森林储存C的能力。
    Changes in plant communities can have large effects on ecosystem carbon (C) dynamics and long-term C stocks. However, how these effects are mediated by environmental context or vary among ecosystems is not well understood. To study this, we used a long-term plant removal experiment set up across 30 forested lake islands in northern Sweden that collectively represent a strong gradient of soil fertility and ecosystem productivity. We measured forest floor CO2 exchange and aboveground and belowground C stocks for a 22-yr experiment involving factorial removal of the two dominant functional groups of the boreal forest understory, namely ericaceous dwarf shrubs and feather mosses, on each of the 30 islands. We found that long-term shrub and moss removal increased forest floor net CO2 loss and decreased belowground C stocks consistently across the islands irrespective of their productivity or soil fertility. However, we did see context-dependent responses of respiration to shrub removals because removals only increased respiration on islands of intermediate productivity. Both CO2 exchange and C stocks responded more strongly to shrub removal than to moss removal. Shrub removal reduced gross primary productivity of the forest floor consistently across the island gradient, but it had no effect on respiration, which suggests that loss of belowground C caused by the removals was driven by reduced litter inputs. Across the island gradient, shrub removal consistently depleted C stocks in the soil organic horizon by 0.8 kg C/m2 . Our results show that the effect of plant functional group diversity on C dynamics can be relatively consistent across contrasting ecosystems that vary greatly in productivity and soil fertility. These findings underline the key role of understory vegetation in forest C cycling, and suggest that global change leading to changes in the relative abundance of both shrubs and mosses could impact on the capacity of boreal forests to store C.
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