背景:迄今为止,疾病缓解抗风湿药(DMARDs)被广泛用作类风湿性关节炎(RA)患者的主要一线治疗选择,甲氨蝶呤(MTX)和来氟米特(LEF;MTX+LEF)疗效优于单药MTX治疗,但MTX+LEF的协同机制尚不清楚。
方法:首先,我们通过网络药理学和分子对接探讨了MTX+LEF在RA中的作用机制。维恩图分析揭示了MTX+LEF-RA和STRING的97个重叠基因靶标,随着Cytoscape插件MOCDE和cytoHubba;和GO富集分析显示,97个协同靶标的功能与123个分子功能(MF)有关,63个单元组件(CC),和1068个生物过程(BP)。Cytoscape插件ClueGO表明,这些靶标在52个术语的KEGG途径中富集,而9个关键基因主要参与雌激素的信号通路,拉斯,Rap1,PI3K-Akt,relaxin,TNF,AMPK,福克斯,催乳素,IL-17和粘附体连接。最后,CETSA和DARTS验证了MTX或LEF与所选靶蛋白EGFR的直接结合,PPARG,RAW264.7细胞中的MMP9和SRC。
结果:我们从7个数据库中确定了292个MTX目标和247个LEF目标。此外,通过合并来自7个数据库的1,925个靶标和从5个GEO数据库中提取的正常对照和RA患者之间的999个差异表达基因(DEGs),确定了2,814个潜在的RA靶标。九个关键基因,ESR1,ALB,CASP3,EGFR,HSP90AA1,SRC,MMP9、PPARG、和IGF1进行了鉴定。分子对接证实MTX和LEF都与除ESR1和IGF1以外的9种关键蛋白中的大多数强烈结合。
结论:这些结果有助于我们了解MTX联合LEF的增强机制,为临床治疗RA提供有针对性的依据。
BACKGROUND: To date, disease-modifying antirheumatic drugs (DMARDs) are widely used as the primary first-line treatment option for patients with rheumatoid arthritis (RA), and the curative effect of methotrexate (MTX) and leflunomide (LEF; MTX + LEF) is greater than that of single-agent MTX therapy, but the synergistic mechanism of MTX + LEF is unclear.
METHODS: First, we explored the mechanism of action of MTX + LEF in RA through network pharmacology and molecular docking. Venn diagram analysis revealed 97 overlapping gene targets of MTX + LEF-RA and STRING, along with Cytoscape plug-in MOCDE and cytoHubba; and GO enrichment analysis revealed that the functions of 97 synergistic targets were related to 123 molecular functions (MF), 63 cell components (CC), and 1,068 biological processes (BP). The Cytoscape plug-in ClueGO demonstrated that these targets were enriched in KEGG pathways of 52 terms, whereas 9 pivotal genes were mainly involved in the signaling pathways of estrogen, Ras, Rap1, PI3K-Akt, relaxin, TNF, AMPK, FoxO, prolactin, IL-17, and adherens junction. Finally, CETSA and DARTS validated the direct binding of MTX or LEF to the selected target proteins EGFR, PPARG, MMP9, and SRC in RAW264.7 cells.
RESULTS: We identified 292 MTX targets and 247 LEF targets from 7 databases. Furthermore, 2,814 potential targets of RA were identified by merging 1,925 targets from 7 databases and 999 differentially expressed genes (DEGs) between normal controls and patients with RA extracted from 5 GEO databases. Nine pivotal genes, ESR1, ALB, CASP3, EGFR, HSP90AA1, SRC, MMP9, PPARG, and IGF1, were identified. Molecular docking verified that both MTX and LEF strongly bind to most of the 9 pivotal proteins except ESR1 and IGF1.
CONCLUSIONS: These results contribute to our understanding of the enhancement mechanism of MTX combined with LEF and provide a targeted basis for the clinical treatment of RA.