cancer-associated fibroblasts (CAFs)

癌症相关成纤维细胞 ( CAFs )
  • 文章类型: Journal Article
    背景:健脾解毒方(JPJDF)是一种传统的中药汤剂,因其抗癌特性而临床使用,尤其是结直肠癌(CRC)。
    目的:本研究旨在研究JPJDF对CRC的治疗作用,并阐明其潜在的分子机制,重点关注其在体外和体内对缺氧诱导因子1α(HIF1α)和癌症相关成纤维细胞(CAFs)的影响。
    方法:UPLC-Q-TOF-MS用于鉴定JPJDF的成分。建立化学诱导的结直肠癌模型并用JPJDF处理以评估其效果。测量肿瘤大小,并进行了组织病理学分析,以检查JPJDF对CRC的调控潜力。通过网络药理学预测了JPJDF的功能机制,分子对接,和转录组学。使用涉及CRC细胞和CCD-18Co成纤维细胞的共培养技术来评估JPJDF对成纤维细胞活化的影响。使用CCK-8增殖评估HIF1α对CAFs的影响,克隆形成,和凋亡检测,通过qPCR和Western印迹定量差异标记表达。
    结果:药效学评估表明JPJDF在不影响体重的情况下缩小了肿瘤大小,表明其在化学诱导的鼠CRC模型中的安全性。网络药理学分析,结合分子对接和转录组学,揭示JPJDF调节HIF-1信号通路,并将HIF1α确定为JPJDF抗CRC作用的潜在靶标。JPJDF通过减弱成纤维细胞活化有效抑制体内CRC生长,通过抑制HIF1α降低α-SMA表达和POSTN分泌。在CRC细胞中HIF1α敲低抑制成纤维细胞增殖和克隆形成,而过表达促进了这些过程。此外,下调HIF1α抑制成纤维细胞中α-SMA和POSTN的表达,而过表达增强成纤维细胞活化。
    结论:JPJDF成为通过靶向HIF1α抑制CAFs激活的有希望的治疗候选药物,提供了在CRC治疗中调节成纤维细胞活化向CAFs的潜在途径。
    BACKGROUND: Jianpi Jiedu Formula (JPJDF) is a traditional Chinese medicinal decoction clinically used for its anti-cancer properties, particularly in colorectal cancer (CRC).
    OBJECTIVE: This study aims to investigate the therapeutic effects of JPJDF on CRC and elucidate its potential molecular mechanisms, with a focus on its impact on hypoxia-inducible factor 1 alpha (HIF1α) and cancer-associated fibroblasts (CAFs) both in vitro and in vivo.
    METHODS: UPLC-Q-TOF-MS was used to identify the constituents of JPJDF. A chemical-induced colorectal cancer model was established and treated with JPJDF to evaluate its effects. Tumor size was measured, and histopathological analyses were performed to examine JPJDF\'s regulatory potential on CRC. The functional mechanism of JPJDF was predicted through network pharmacology, molecular docking, and transcriptomics. Co-culture techniques involving CRC cells and CCD-18Co fibroblasts were used to assess JPJDF\'s impact on fibroblast activation. The effects of HIF1α on CAFs were evaluated using CCK-8 proliferation, clonal formation, and apoptotic assays, with differential marker expression quantified via qPCR and Western blotting.
    RESULTS: Pharmacodynamic assessment demonstrated that JPJDF reduced tumor size without affecting body weight, indicating its safety in the chemical-induced murine CRC model. Network pharmacology analysis, combined with molecular docking and transcriptomics, revealed that JPJDF regulates HIF-1 signaling pathways and identified HIF1α as a potential target for JPJDF\'s anti-CRC effect. JPJDF effectively suppressed CRC growth in vivo by attenuating fibroblast activation, reducing α-SMA expression and POSTN secretion through HIF1α inhibition. HIF1α knockdown in CRC cells inhibited fibroblast proliferation and clonal formation, while overexpression promoted these processes. Additionally, downregulating HIF1α suppressed α-SMA and POSTN expression in fibroblasts, whereas overexpression enhanced fibroblast activation.
    CONCLUSIONS: JPJDF emerges as a promising therapeutic candidate for inhibiting CAFs activation by targeting HIF1α, offering potential avenues for modulating fibroblast activation towards CAFs in CRC therapy.
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  • 文章类型: Journal Article
    在过去的几年中,胰腺癌的发病率不断增加,并且是癌症相关死亡率的主要原因之一。肿瘤微环境(TME)细胞与胰腺导管腺癌(PDAC)肿瘤中的癌细胞相互作用,以保持癌细胞的代谢,抑制药物输送,增强免疫抑制机制,最终产生对化疗和免疫治疗的抗性。新策略针对TME的细胞群体中的TME遗传改变和特定途径。PDAC细胞和TME细胞群(包括癌症相关的成纤维细胞)之间形成复杂的分子相互作用,骨髓来源的抑制细胞,胰腺星状细胞,肿瘤相关巨噬细胞,肿瘤相关中性粒细胞,和调节性T细胞。在本次审查中,我们旨在全面探索胰腺癌TME细胞群的分子景观,并讨论当前的TME靶向策略,为进一步研究和临床前测试提供思路。
    Pancreatic cancer demonstrates an ever-increasing incidence over the last years and represents one of the top causes of cancer-associated mortality. Cells of the tumor microenvironment (TME) interact with cancer cells in pancreatic ductal adenocarcinoma (PDAC) tumors to preserve cancer cells\' metabolism, inhibit drug delivery, enhance immune suppression mechanisms and finally develop resistance to chemotherapy and immunotherapy. New strategies target TME genetic alterations and specific pathways in cell populations of the TME. Complex molecular interactions develop between PDAC cells and TME cell populations including cancer-associated fibroblasts, myeloid-derived suppressor cells, pancreatic stellate cells, tumor-associated macrophages, tumor-associated neutrophils, and regulatory T cells. In the present review, we aim to fully explore the molecular landscape of the pancreatic cancer TME cell populations and discuss current TME targeting strategies to provide thoughts for further research and preclinical testing.
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  • 文章类型: Journal Article
    结直肠癌(CRC)是全球癌症死亡的主要原因,和癌症相关成纤维细胞(CAFs)在肿瘤微环境(TME)中起主要作用,这促进了CRC的进展。了解CAF如何促进CRC的进展对于开发新的治疗方法至关重要。这项研究的目的是了解CAF衍生的基质衍生因子-1(SDF-1)及其与相应的C-X-C基序趋化因子受体4(CXCR4)的相互作用如何促进CRC进展。我们的研究重点是它们在促进肿瘤细胞迁移和侵袭中的作用以及它们对肿瘤干细胞(CSC)特性的影响。最终影响患者的预后。这里,使用体内方法和临床组织学样本,我们分析了分泌的SDF-1对CRC进展的影响,特别是在肿瘤细胞行为和干性方面。我们证明CAF分泌的SDF-1通过旁分泌信号显着增强CRC细胞的迁移和侵袭。此外,SDF-1在CRC细胞系HT29和HCT-116中的过表达触发这些细胞产生自分泌SDF-1信号,这进一步增强了他们的CSC特性,包括移民,入侵,和球体的形成。一项免疫组织化学研究表明,SDF-1和CXCR4在CRC组织中的表达密切相关,这显著影响了患者的预后。施用CXCR4的抑制剂AMD3100逆转了整个现象。我们的结果强烈表明,在CRC中靶向该信号轴是减弱肿瘤进展的可行方法。它可能,因此,作为改善CRC患者预后的替代治疗方法,尤其是那些有先进,经常性,或标准治疗后的转移性CRC。
    Colorectal cancer (CRC) is a leading cause of cancer mortality worldwide, and cancer-associated fibroblasts (CAFs) play a major role in the tumor microenvironment (TME), which facilitates the progression of CRC. It is critical to understand how CAFs promote the progression of CRC for the development of novel therapeutic approaches. The purpose of this study was to understand how CAF-derived stromal-derived factor-1 (SDF-1) and its interactions with the corresponding C-X-C motif chemokine receptor 4 (CXCR4) promote CRC progression. Our study focused on their roles in promoting tumor cell migration and invasion and their effects on the characteristics of cancer stem cells (CSCs), which ultimately impact patient outcomes. Here, using in vivo approaches and clinical histological samples, we analyzed the influence of secreted SDF-1 on CRC progression, especially in terms of tumor cell behavior and stemness. We demonstrated that CAF-secreted SDF-1 significantly enhanced CRC cell migration and invasion through paracrine signaling. In addition, the overexpression of SDF-1 in CRC cell lines HT29 and HCT-116 triggered these cells to generate autocrine SDF-1 signaling, which further enhanced their CSC characteristics, including those of migration, invasion, and spheroid formation. An immunohistochemical study showed a close relationship between SDF-1 and CXCR4 expression in CRC tissue, and this significantly affected patient outcomes. The administration of AMD3100, an inhibitor of CXCR4, reversed the entire phenomenon. Our results strongly suggest that targeting this signaling axis in CRC is a feasible approach to attenuating tumor progression, and it may, therefore, serve as an alternative treatment method to improve the prognosis of patients with CRC, especially those with advanced, recurrent, or metastatic CRC following standard therapy.
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  • 文章类型: Journal Article
    子宫内膜癌(UCEC)是女性三大恶性肿瘤之一。HOX基因调节肿瘤的发展。然而,HOX在多种细胞类型的表达机制中以及在UCEC中肿瘤微环境(TME)细胞浸润的发展和进展中的潜在作用仍然未知。在这项研究中,我们利用癌症基因组图谱(TCGA)数据库和国际癌症基因组联盟(ICGC)数据库分析了基于39个HOX基因的529例UCEC患者的转录组数据,梳理临床信息,我们发现HOX基因是UCEC发生发展和TME多样性和复杂性形成的关键因素。这里,开发了一种新的评分系统来量化UCEC中的个体HOX模式.我们的研究发现,低HOX评分组患者有丰富的抗肿瘤免疫细胞浸润,良好的肿瘤分化,更好的预测。相比之下,高HOX评分与免疫检查点的封锁有关,增强了对免疫疗法的反应。实时定量PCR(RT-qPCR)和免疫组织化学(IHC)显示HOX基因在肿瘤患者中的较高表达。我们发现,上皮细胞中HOX基因的显著上调可以通过单细胞RNA测序(scRNA-seq)激活与肿瘤侵袭和转移相关的信号通路,如核苷酸代谢过程等。最后,通过HOX评分与癌症相关成纤维细胞(CAFs)之间的正相关关系建立的风险预后模型可以通过scRNA-seq和转录组数据集预测个体患者的预后.总之,HOX基因可作为诊断和预测UCEC的潜在生物标志物,并开发更有效的治疗策略。
    Endometrial cancer (UCEC) is one of three major malignant tumors in women. The HOX gene regulates tumor development. However, the potential roles of HOX in the expression mechanism of multiple cell types and in the development and progression of tumor microenvironment (TME) cell infiltration in UCEC remain unknown. In this study, we utilized both the The Cancer Genome Atlas (TCGA) database and International Cancer Genome Consortium (ICGC) database to analyze transcriptome data of 529 patients with UCEC based on 39 HOX genes, combing clinical information, we discovered HOX gene were a pivotal factor in the development and progression of UCEC and in the formation of TME diversity and complexity. Here, a new scoring system was developed to quantify individual HOX patterns in UCEC. Our study found that patients in the low HOX score group had abundant anti-tumor immune cell infiltration, good tumor differentiation, and better prognoses. In contrast, a high HOX score was associated with blockade of immune checkpoints, which enhances the response to immunotherapy. The Real-Time quantitative PCR (RT-qPCR) and Immunohistochemistry (IHC) exhibited a higher expression of the HOX gene in the tumor patients. We revealed that the significant upregulation of the HOX gene in the epithelial cells can activate signaling pathway associated with tumour invasion and metastasis through single-cell RNA sequencing (scRNA-seq), such as nucleotide metabolic proce and so on. Finally, a risk prognostic model established by the positive relationship between HOX scores and cancer-associated fibroblasts (CAFs) can predict the prognosis of individual patients by scRNA-seq and transcriptome data sets. In sum, HOX gene may serve as a potential biomarker for the diagnosis and prediction of UCEC and to develop more effective therapeutic strategies.
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  • 文章类型: Journal Article
    背景:癌相关成纤维细胞(CAF)在结直肠癌(CRC)的进展中起着至关重要的作用。然而,CAF亚群轨迹分化对CRC的影响尚不清楚.
    方法:在本研究中,我们首先使用批量和整合的单细胞测序数据探索CAFs亚群的轨迹差异,然后基于CAFs亚群的轨迹差异基因对CRC样本进行一致性聚类。随后,我们利用生物信息学分析了CRC亚型的异质性.最后,我们使用机器学习构建了相关的预后特征,并使用空间转录组数据进行了验证.
    结果:基于CAFs亚群轨迹分化的差异基因,在这项研究中,我们确定了两种CRC亚型(C1和C2).与C1相比,C2的预后较差,较高的免疫逃避微环境和高CAF特性。C1主要与代谢有关,而C2主要与细胞转移和免疫调节有关。通过结合10种机器学习算法的101种组合,我们开发了基于C2特征基因的高CAF风险特征(HCAFRS).HCAFRS是CRC的独立预后因素,当结合临床参数时,可显著预测CRC患者的总生存期。HCAFRS与上皮间质转化密切相关,血管生成,和缺氧。此外,HCAFRS的风险评分主要来自CAFs,并在空间转录组数据中得到验证.
    结论:结论:HCAFRS有可能作为CRC的一个有希望的预后指标,改善CRC患者的生活质量。
    BACKGROUND: Cancer-associated fibroblasts (CAFs) play a crucial role in the progression of colorectal cancer (CRC). However, the impact of CAF subpopulation trajectory differentiation on CRC remains unclear.
    METHODS: In this study, we first explored the trajectory differences of CAFs subpopulations using bulk and integrated single-cell sequencing data, and then performed consensus clustering of CRC samples based on the trajectory differential genes of CAFs subpopulations. Subsequently, we analyzed the heterogeneity of CRC subtypes using bioinformatics. Finally, we constructed relevant prognostic signature using machine learning and validated them using spatial transcriptomic data.
    RESULTS: Based on the differential genes of CAFs subpopulation trajectory differentiation, we identified two CRC subtypes (C1 and C2) in this study. Compared to C1, C2 exhibited worse prognosis, higher immune evasion microenvironment and high CAF characteristics. C1 was primarily associated with metabolism, while C2 was primarily associated with cell metastasis and immune regulation. By combining 101 combinations of 10 machine learning algorithms, we developed a High-CAF risk signatures (HCAFRS) based on the C2 characteristic gene. HCAFRS was an independent prognostic factor for CRC and, when combined with clinical parameters, significantly predicted the overall survival of CRC patients. HCAFRS was closely associated with epithelial-mesenchymal transition, angiogenesis, and hypoxia. Furthermore, the risk score of HCAFRS was mainly derived from CAFs and was validated in the spatial transcriptomic data.
    CONCLUSIONS: In conclusion, HCAFRS has the potential to serve as a promising prognostic indicator for CRC, improving the quality of life for CRC patients.
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  • 文章类型: Journal Article
    癌症发病率和死亡率正在增加,并影响全球预期寿命。肿瘤微环境(TME)中的代谢重编程与肿瘤发生密切相关,programming,转移和耐药性。肿瘤细胞通过细胞因子和代谢物的代谢诱导驱动TME中其他细胞的代谢重编程,和代谢底物竞争。因此,这通过提供代谢支持并促进免疫抑制和血管生成来促进肿瘤细胞生长。TME中的代谢相互作用提供了潜在的治疗靶标。这里,我们专注于TME中四个主要细胞亚群的代谢重编程:CAFs,TAM,TIL和TECs,以及它们与肿瘤细胞的相互作用。我们还总结了针对这些细胞代谢途径的药物和疗法,特别是在免疫检查点阻断治疗的背景下。
    Cancer incidence and mortality are increasing and impacting global life expectancy. Metabolic reprogramming in the tumor microenvironment (TME) is intimately related to tumorigenesis, progression, metastasis and drug resistance. Tumor cells drive metabolic reprogramming of other cells in the TME through metabolic induction of cytokines and metabolites, and metabolic substrate competition. Consequently, this boosts tumor cell growth by providing metabolic support and facilitating immunosuppression and angiogenesis. The metabolic interplay in the TME presents potential therapeutic targets. Here, we focus on the metabolic reprogramming of four principal cell subsets in the TME: CAFs, TAMs, TILs and TECs, and their interaction with tumor cells. We also summarize medications and therapies targeting these cells\' metabolic pathways, particularly in the context of immune checkpoint blockade therapy.
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  • 文章类型: Journal Article
    肿瘤微环境(TME)内的癌症相关成纤维细胞(CAF)可与肿瘤实质细胞相互作用,以促进肿瘤生长和迁移。CAFs表达的成纤维细胞活化蛋白(FAP)可以用正电子发射断层扫描(PET)示踪剂靶向,但是关于颅内肿瘤中FAP表达模式的研究仍然很少。我们旨在使用镓-68FAP抑制剂-04(68Ga-FAPi-04)和免疫组织化学染色评估颅内肿瘤中的FAP表达模式,并通过头对头比较68Ga-FAPi-04和氟化物-18氟乙基-L-酪氨酸(18F-FET)进行PET定量分析,观察CAF与肿瘤细胞之间的相互作用。
    我们前瞻性纳入了22例颅内肿块病变的成人患者。手术前应用68Ga-FAPi-04和18F-FETPET-计算机断层扫描(PET/CT)脑成像。最大肿瘤与脑比率(TBRmax),代谢性肿瘤体积(MTV),并获得总病变示踪剂摄取(TLU),由于缺乏相关指南,68Ga-FAPi-04阳性病变的勾画使用了不同的阈值。计算了两种示踪剂的MTV和TLU比率。线性回归用于观察半定量PET参数的差异功效。
    共有22名患者,平均年龄为50±13岁(范围,27-69岁)注册。68Ga-FAPi-04摄取的异质模式[最大标准化摄取值(SUVmax)的中位数=3.8;范围,0.1-19.1]被发现。更多的恶性肿瘤,包括脑转移,胶质母细胞瘤,髓母细胞瘤,一般表现出更显著的68Ga-FAPi-04摄取比没有较低的恶性肿瘤,而SUVmax和TBRmax在原发性脑肿瘤的三个颅内病变组中表现出无显着差异,脑转移瘤,与非癌性疾病(SUVmax:P=0.092;TBRmax:P=0.189)。免疫组织化学染色显示各种颅内病变中不同的基质FAP表达状态。在15例颅内肿瘤摄取68Ga-FAPi-04阳性的患者中,MTVFAPi:MTVFET比率在各种类型的颅内肿瘤中具有不同的疗效[95%置信区间(CI):0.572-7.712;P=0.027],进一步的定量分析证实了MTVFAPi:MTVFET比率(95%CI:-0.045至11.013,P=0.052;95%CI:0.044-17.903,P=0.049;95%CI:-1.131至30.596,P=0.065)具有不同的等高线体积阈值。
    这项头对头研究证明了颅内肿瘤中FAP的异质性表达。因此,肿瘤实质中的FAP表达体积百分比可以提供关于区分颅内肿瘤类型的益处。
    UNASSIGNED: Cancer-associated fibroblasts (CAFs) within the tumor microenvironment (TME) can interact with tumor parenchymal cells to promote tumor growth and migration. Fibroblast activation protein (FAP) expressed by CAFs can be targeted with positron emission tomography (PET) tracers, but studies on FAP expression patterns in intracranial tumors remain scarce. We aimed to evaluate FAP expression patterns in intracranial tumors with gallium-68 FAP inhibitor-04 (68Ga-FAPi-04) and immunohistochemical staining and to observe the interactions between CAFs and tumor cells with a head-to-head comparison of 68Ga-FAPi-04 and fluoride-18 fluoroethyl-L-tyrosine (18F-FET) for PET quantification analysis.
    UNASSIGNED: We prospectively enrolled 22 adult patients with intracranial mass lesions. 68Ga-FAPi-04 and 18F-FET PET-computed tomography (PET/CT) brain imaging were applied before surgery. Maximal tumor-to-brain ratio (TBRmax), metabolic tumor volume (MTV), and total lesion tracer uptake (TLU) was obtained, and different thresholds were used for 68Ga-FAPi-04-positive lesion delineation owing to the lack of relevant guidelines. The MTV and TLU ratios of both tracers were calculated. Linear regression was applied to observe the differential efficacy of semiquantitative PET parameters.
    UNASSIGNED: A total of 22 patients with a mean age of 50±13 years (range, 27-69 years) were enrolled. Heterogeneous patterns of 68Ga-FAPi-04 uptake [median of maximal standardized uptake value (SUVmax) =3.8; range, 0.1-19.1] were found. More malignant tumors, including brain metastasis, glioblastoma, and medulloblastoma, generally exhibited more significant 68Ga-FAPi-04 uptake than did the less malignant tumors, while the SUVmax and TBRmax exhibited nonsignificant differences across three intracranial lesion groups of primary brain tumor, brain metastasis, and noncancerous disease (SUVmax: P=0.092; TBRmax: P=0.189). Immunohistochemistry staining showed different stromal FAP expression status in various intracranial lesions. In 15 patients with positive 68Ga-FAPi-04 intracranial tumor uptake, the MTVFAPi:MTVFET ratio had differential efficacy in various types of intracranial tumors [95% confidence interval (CI): 0.572-7.712; P=0.027], and further quantification analyses confirmed the differential ability of the MTVFAPi:MTVFET ratio (95% CI: -0.045 to 11.013, P=0.052; 95% CI: 0.044-17.903, P=0.049; 95% CI: -1.131 to 30.596, P=0.065) with different isocontour volumetric thresholds.
    UNASSIGNED: This head-to-head study demonstrated heterogeneous FAP expression in intracranial tumors. The FAP expression volume percentage in tumor parenchyma may therefore offer benefit with respect to differentiating between intracranial tumor types.
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  • 文章类型: Journal Article
    嵌合抗原受体(CAR)T细胞由于其快速肿瘤特异性杀伤和持久肿瘤免疫的能力而成为治疗血液恶性肿瘤的突破性疗法。然而,在实体瘤患者中未观察到同样的成功。很大程度上,这是由于安全和统一的目标选择带来的额外挑战,低效的CAR-T细胞进入疾病部位和敌对的免疫抑制肿瘤微环境的存在。
    从Kuwana对CAR的首次描述中,在PubMed数据库上审查了文献,黑泽明及其同事于1987年12月至今。这些文献表明,为了解决实体瘤,CART细胞可以进一步工程化,具有额外的铠装策略,以促进恶性病变的运输和浸润,以及逆转在实体瘤病变内运作的抑制性免疫检查点。
    在这篇评论中,我们描述了CART细胞技术的一些最新进展,这些技术旨在解决实体肿瘤带来的问题,包括肿瘤募集,渗透,免疫抑制,代谢妥协,和缺氧。
    UNASSIGNED: Chimeric antigen receptor (CAR) T-cells have emerged as a ground-breaking therapy for the treatment of hematological malignancies due to their capacity for rapid tumor-specific killing and long-lasting tumor immunity. However, the same success has not been observed in patients with solid tumors. Largely, this is due to the additional challenges imposed by safe and uniform target selection, inefficient CAR T-cell access to sites of disease and the presence of a hostile immunosuppressive tumor microenvironment.
    UNASSIGNED: Literature was reviewed on the PubMed database from the first description of a CAR by Kuwana, Kurosawa and colleagues in December 1987 through to the present day. This literature indicates that in order to tackle solid tumors, CAR T-cells can be further engineered with additional armoring strategies that facilitate trafficking to and infiltration of malignant lesions together with reversal of suppressive immune checkpoints that operate within solid tumor lesions.
    UNASSIGNED: In this review, we describe a number of recent advances in CAR T-cell technology that set out to combat the problems imposed by solid tumors including tumor recruitment, infiltration, immunosuppression, metabolic compromise, and hypoxia.
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  • 文章类型: Journal Article
    背景:在过去的二十年里,肿瘤来源的RNA表达特征已被开发用于全球最常见的两种肿瘤,即前列腺和乳腺肿瘤,以提高结果预测和治疗决策。在这种情况下,由肿瘤微环境的主要成分获得的分子特征,如癌症相关成纤维细胞(CAF),已被用作预后和治疗工具。然而,关于CAFs相关基因特征在乳腺癌和前列腺癌中的意义的更深入理解仍有待进一步研究.
    方法:采用RNA测序技术(RNA-seq)来分析和比较从乳腺和前列腺肿瘤患者中分离的CAFs的转录组。将表征乳腺和前列腺CAF的差异表达基因(DEGs)与来自乳腺和前列腺肿瘤患者的大量RNA-seq谱的公共数据集的数据相交。途径富集分析使我们能够了解DEG的生物学意义。K-均值聚类用于构建对乳腺癌和前列腺癌具有特异性的CAF相关基因特征,并将患者的独立队列分为高基因表达和低基因表达簇。采用Kaplan-Meier存活曲线和对数秩检验来预测患者群的结果参数的差异。使用决策树分析来验证聚类结果,然后使用增强计算来改进决策树算法获得的结果。
    结果:在乳腺CAF中获得的数据使我们能够评估包括8个基因(ITGA11,THBS1,FN1,EMP1,ITGA2,FYN,SPP1和EMP2)属于前转移信号途径,如斑粘连途径。生存分析表明,显示上述基因高表达的乳腺癌患者群显示更差的临床结果。接下来,我们确定了前列腺CAFs相关的标签,包括11个基因(IL13RA2,GDF7,IL33,CXCL1,TNFRSF19,CXCL6,LIFR,CXCL5、IL7、TSLP、和TNFSF15)与免疫反应相关。这些基因的低表达预示着前列腺癌患者的低生存率。所获得的结果通过两步法得到了显著验证,基于无监督(聚类)和监督(分类)学习技术,在独立的RNA-seq队列中显示出较高的预测准确性(≥90%)。
    结论:我们发现来自乳腺和前列腺肿瘤的CAFs转录谱存在巨大的异质性。值得注意的是,这两个新的CAFs相关基因标记可能被认为是可靠的预后指标和有价值的生物标志物,可以更好地管理乳腺癌和前列腺癌患者.
    BACKGROUND: Over the last two decades, tumor-derived RNA expression signatures have been developed for the two most commonly diagnosed tumors worldwide, namely prostate and breast tumors, in order to improve both outcome prediction and treatment decision-making. In this context, molecular signatures gained by main components of the tumor microenvironment, such as cancer-associated fibroblasts (CAFs), have been explored as prognostic and therapeutic tools. Nevertheless, a deeper understanding of the significance of CAFs-related gene signatures in breast and prostate cancers still remains to be disclosed.
    METHODS: RNA sequencing technology (RNA-seq) was employed to profile and compare the transcriptome of CAFs isolated from patients affected by breast and prostate tumors. The differentially expressed genes (DEGs) characterizing breast and prostate CAFs were intersected with data from public datasets derived from bulk RNA-seq profiles of breast and prostate tumor patients. Pathway enrichment analyses allowed us to appreciate the biological significance of the DEGs. K-means clustering was applied to construct CAFs-related gene signatures specific for breast and prostate cancer and to stratify independent cohorts of patients into high and low gene expression clusters. Kaplan-Meier survival curves and log-rank tests were employed to predict differences in the outcome parameters of the clusters of patients. Decision-tree analysis was used to validate the clustering results and boosting calculations were then employed to improve the results obtained by the decision-tree algorithm.
    RESULTS: Data obtained in breast CAFs allowed us to assess a signature that includes 8 genes (ITGA11, THBS1, FN1, EMP1, ITGA2, FYN, SPP1, and EMP2) belonging to pro-metastatic signaling routes, such as the focal adhesion pathway. Survival analyses indicated that the cluster of breast cancer patients showing a high expression of the aforementioned genes displays worse clinical outcomes. Next, we identified a prostate CAFs-related signature that includes 11 genes (IL13RA2, GDF7, IL33, CXCL1, TNFRSF19, CXCL6, LIFR, CXCL5, IL7, TSLP, and TNFSF15) associated with immune responses. A low expression of these genes was predictive of poor survival rates in prostate cancer patients. The results obtained were significantly validated through a two-step approach, based on unsupervised (clustering) and supervised (classification) learning techniques, showing a high prediction accuracy (≥ 90%) in independent RNA-seq cohorts.
    CONCLUSIONS: We identified a huge heterogeneity in the transcriptional profile of CAFs derived from breast and prostate tumors. Of note, the two novel CAFs-related gene signatures might be considered as reliable prognostic indicators and valuable biomarkers for a better management of breast and prostate cancer patients.
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  • 文章类型: Journal Article
    背景:cyclinD1-cyclin依赖性激酶(CDK)4/6抑制剂palbociclib联合内分泌治疗在治疗雌激素受体(ER)阳性和HER2阴性的晚期乳腺癌(BC)方面具有显著疗效。然而,对帕博西尼的耐药性经常出现,强调需要为BC患者的更全面的治疗策略确定新的目标。
    方法:产生抗palbociclib的BC细胞系并用作模型系统。基因沉默技术和过表达实验,实时PCR,免疫印迹和染色质免疫沉淀研究以及细胞活力,集落和3D球体形成测定用于评估G蛋白偶联雌激素受体(GPER)在BC细胞中对palbociclib的抗性中的参与。还进行了分子对接模拟以研究palbociclib与GPER的潜在相互作用。此外,与乳腺癌分离的癌症相关成纤维细胞(CAFs)共培养的BC细胞,用于研究GPER信号传导是否可能有助于肿瘤微环境内针对palbociclib耐药性的功能性细胞相互作用。最后,通过对大型BC患者队列的临床和表达数据进行生物信息学分析和k-means聚类,探讨了palbociclib耐药新介质的临床意义。
    结果:解剖表征对palbociclib耐药的ER阳性BC细胞的分子事件,发现ERα的下调和GPER的上调。为了评估参与GPER上调的分子事件,我们确定表皮生长因子受体(EGFR)与GPER的启动子区相互作用,并刺激其对Palbociclib治疗耐药的BC细胞的表达。为这些数据添加进一步的线索,我们确定palbociclib确实通过GPER信号在CAFs中诱导促炎转录事件.值得注意的是,通过进行共培养试验,我们证明GPER有助于降低对palbociclib的敏感性,同时促进BC细胞与肿瘤微环境CAFs的主要成分之间的功能性相互作用.
    结论:总体而言,我们的结果为GPER可能导致BC细胞palbociclib耐药的分子事件提供了新的见解.为了评估靶向GPER介导的BC细胞和CAF之间的相互作用是否可能在对palbociclib耐药的BC的更全面的治疗方法中有用,需要进行额外的研究。
    BACKGROUND: The cyclin D1-cyclin dependent kinases (CDK)4/6 inhibitor palbociclib in combination with endocrine therapy shows remarkable efficacy in the management of estrogen receptor (ER)-positive and HER2-negative advanced breast cancer (BC). Nevertheless, resistance to palbociclib frequently arises, highlighting the need to identify new targets toward more comprehensive therapeutic strategies in BC patients.
    METHODS: BC cell lines resistant to palbociclib were generated and used as a model system. Gene silencing techniques and overexpression experiments, real-time PCR, immunoblotting and chromatin immunoprecipitation studies as well as cell viability, colony and 3D spheroid formation assays served to evaluate the involvement of the G protein-coupled estrogen receptor (GPER) in the resistance to palbociclib in BC cells. Molecular docking simulations were also performed to investigate the potential interaction of palbociclib with GPER. Furthermore, BC cells co-cultured with cancer-associated fibroblasts (CAFs) isolated from mammary carcinoma, were used to investigate whether GPER signaling may contribute to functional cell interactions within the tumor microenvironment toward palbociclib resistance. Finally, by bioinformatics analyses and k-means clustering on clinical and expression data of large cohorts of BC patients, the clinical significance of novel mediators of palbociclib resistance was explored.
    RESULTS: Dissecting the molecular events that characterize ER-positive BC cells resistant to palbociclib, the down-regulation of ERα along with the up-regulation of GPER were found. To evaluate the molecular events involved in the up-regulation of GPER, we determined that the epidermal growth factor receptor (EGFR) interacts with the promoter region of GPER and stimulates its expression toward BC cells resistance to palbociclib treatment. Adding further cues to these data, we ascertained that palbociclib does induce pro-inflammatory transcriptional events via GPER signaling in CAFs. Of note, by performing co-culture assays we demonstrated that GPER contributes to the reduced sensitivity to palbociclib also facilitating the functional interaction between BC cells and main components of the tumor microenvironment named CAFs.
    CONCLUSIONS: Overall, our results provide novel insights on the molecular events through which GPER may contribute to palbociclib resistance in BC cells. Additional investigations are warranted in order to assess whether targeting the GPER-mediated interactions between BC cells and CAFs may be useful in more comprehensive therapeutic approaches of BC resistant to palbociclib.
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