cDNA, complementary DNA

cDNA,互补 DNA
  • 文章类型: Journal Article
    血管平滑肌细胞的表型转换是腹主动脉瘤(AAA)病理的核心过程。我们发现敲低TCF7L1(转录因子7样1),转录因子TCF/LEF(T细胞因子/淋巴增强因子)家族的成员,抑制血管平滑肌细胞分化。这项研究暗示了潜在的干预措施,以维持正常的,分化的平滑肌细胞状态,从而消除了AAA的发病机制。此外,我们的研究为TCF7L1作为AAA生物标志物的潜在用途提供了见解.
    Phenotypic switching of vascular smooth muscle cells is a central process in abdominal aortic aneurysm (AAA) pathology. We found that knockdown TCF7L1 (transcription factor 7-like 1), a member of the TCF/LEF (T cell factor/lymphoid enhancer factor) family of transcription factors, inhibits vascular smooth muscle cell differentiation. This study hints at potential interventions to maintain a normal, differentiated smooth muscle cell state, thereby eliminating the pathogenesis of AAA. In addition, our study provides insights into the potential use of TCF7L1 as a biomarker for AAA.
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  • 文章类型: Journal Article
    尽管银纳米粒子(NPs)的广泛使用,这些NP可以积累并对各种器官产生毒性作用。然而,含藻酸盐涂层的银纳米结构(Ag-NS)对男性生殖系统的影响尚未研究。因此,本研究旨在探讨该NS对精子功能和睾丸结构的影响。经过Ag-NS的合成和表征,将动物分为五组(n=8),包括一个对照组,两个假手术组(接受1.5mg/kg/天的海藻酸钠溶液,持续14天和35天),和两个治疗组(以相同的剂量和时间接受Ag-NS)。注射后,精子参数,凋亡,和自噬通过TUNEL分析和BaxmRNA表达的测量,Bcl-2、caspase-3、LC3和Beclin-1。通过体外受精(IVF)评估受精率,使用TUNEL测定和苏木精和曙红(H&E)染色分析睾丸结构。结果表明,NS呈杆状,尺寸约为60纳米,并可能降低精子功能和生育能力。基因表达结果显示凋亡标志物的增加和自噬标志物的减少,表明凋亡细胞死亡。此外,Ag-NS侵入睾丸组织,尤其是在慢性期(35天),导致组织改变和上皮崩解。结果表明,精子参数和生育力受到影响。此外,NS对睾丸组织有负面影响,导致暴露于这些NS的男性不孕。
    Despite the widespread use of silver nanoparticles (NPs), these NPs can accumulate and have toxic effects on various organs. However, the effects of silver nanostructures (Ag-NS) with alginate coating on the male reproductive system have not been studied. Therefore, this study aimed to investigate the impacts of this NS on sperm function and testicular structure. After the synthesis and characterization of Ag-NS, the animals were divided into five groups (n = 8), including one control group, two sham groups (received 1.5 mg/kg/day alginate solution for 14 and 35 days), and two treatment groups (received Ag-NS at the same dose and time). Following injections, sperm parameters, apoptosis, and autophagy were analyzed by the TUNEL assay and measurement of the mRNA expression of Bax, Bcl-2, caspase-3, LC3, and Beclin-1. Fertilization rate was assessed by in vitro fertilization (IVF), and testicular structure was analyzed using the TUNEL assay and hematoxylin and eosin (H&E) staining. The results showed that the NS was rod-shaped, had a size of about 60 nm, and could reduce sperm function and fertility. Gene expression results demonstrated an increase in the apoptotic markers and a decrease in autophagy markers, indicating apoptotic cell death. Moreover, Ag-NS invaded testicular tissues, especially in the chronic phase (35 days), resulting in tissue alteration and epithelium disintegration. The results suggest that sperm parameters and fertility were affected. In addition, NS has negative influences on testicular tissues, causing infertility in men exposed to these NS.
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  • 文章类型: Journal Article
    已提出将暴露于测试物质的细胞或动物中的整体基因表达谱开始与对照显着不同的浓度作为用于筛选水平危害评估的替代出发点。本研究描述了用幼虫头鱼尾鱼进行高通量兼容转录组学测定的初步测试。孵化后的一天,鱼头小鱼暴露于11种不同浓度的三种金属中,三种选择性5-羟色胺再摄取抑制剂,和四个新烟碱样化合物24小时和浓度反应模型应用于全身基因表达数据。基于转录组学的出发点(tPODs)始终低于鱼类顶端终点研究中报告的效应浓度。然而,基于幼虫的头头min鱼的tPOD并不总是低于据报道在甲壳类或昆虫等其他水生生物中引起顶端毒性的浓度。来自试验测定的数据的随机计算机亚采样用于评估各种测定设计和接受考虑因素,例如转录组覆盖率,每次治疗的重复个体数量,和最少数量的差异表达基因,以产生可靠的tPOD估计。结果表明,可以得出浓度响应关系的基因总数与所得tPOD估计值的总体变异性之间存在很强的关联。我们的结论是,对于我们当前的测定设计和分析管道,基于少于15个差异表达基因的tPOD对于筛选可能是不可靠的,并且基因表达谱中的个体间变异性似乎是比单独的样本大小更显著的tPOD变异性的驱动因素。结果代表了开发用于生态危害筛选的高通量转录组学测定的初始步骤。
    Concentrations at which global gene expression profiles in cells or animals exposed to a test substance start to differ significantly from those of controls have been proposed as an alternative point of departure for use in screening level hazard assessment. The present study describes pilot testing of a high throughput compatible transcriptomics assay with larval fathead minnows. One day post hatch fathead minnows were exposed to eleven different concentrations of three metals, three selective serotonin reuptake inhibitors, and four neonicotinoid-like compounds for 24 h and concentration response modeling was applied to whole body gene expression data. Transcriptomics-based points of departure (tPODs) were consistently lower than effect concentrations reported in apical endpoint studies in fish. However, larval fathead minnow-based tPODs were not always lower than concentrations reported to elicit apical toxicity in other aquatic organisms like crustaceans or insects. Random in silico subsampling of data from the pilot assays was used to evaluate various assay design and acceptance considerations such as transcriptome coverage, number of replicate individuals to sequence per treatment, and minimum number of differentially expressed genes to produce a reliable tPOD estimate. Results showed a strong association between the total number of genes for which a concentration response relationship could be derived and the overall variability in the resulting tPOD estimates. We conclude that, for our current assay design and analysis pipeline, tPODs based on fewer than 15 differentially expressed genes are likely to be unreliable for screening and that interindividual variability in gene expression profiles appears to be a more significant driver of tPOD variability than sample size alone. Results represent initial steps toward developing high throughput transcriptomics assays for use in ecological hazard screening.
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  • 文章类型: Journal Article
    糖原合成酶激酶3(GSK-3)抑制已成为几种疾病的潜在治疗靶点。包括癌症.然而,GSK-3调节人体心脏电生理的作用仍不明确。我们证明了SB216763,一种GSK-3抑制剂,可以急剧降低人体心脏切片的传导速度。结合计算模型和实验方法提供了对GSK-3抑制介导的变化的机械洞察,揭示钠通道电导和组织电导率降低可能是观察到的表型的基础。我们的研究表明,人心肌中的GSK-3抑制作用会改变电生理,并可能易患心律失常底物;因此,可以考虑监测不良致心律失常事件.
    Glycogen synthase kinase 3 (GSK-3) inhibition has emerged as a potential therapeutic target for several diseases, including cancer. However, the role for GSK-3 regulation of human cardiac electrophysiology remains ill-defined. We demonstrate that SB216763, a GSK-3 inhibitor, can acutely reduce conduction velocity in human cardiac slices. Combined computational modeling and experimental approaches provided mechanistic insight into GSK-3 inhibition-mediated changes, revealing that decreased sodium-channel conductance and tissue conductivity may underlie the observed phenotypes. Our study demonstrates that GSK-3 inhibition in human myocardium alters electrophysiology and may predispose to an arrhythmogenic substrate; therefore, monitoring for adverse arrhythmogenic events could be considered.
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  • 文章类型: Journal Article
    心力衰竭(HF)的特征在于进行性纤维化。成纤维细胞和间充质干细胞(MSC)都可以分化成促纤维化肌成纤维细胞。MSCs分泌和表达血小板源性生长因子(PDGF)及其受体。我们假设心脏MSCs(cMSCs)中的PDGF信号促进其肌成纤维细胞分化,并加重心肌梗死后左心室重构和纤维化。我们表明,心肌梗死后心脏衰竭的cMSC表现出改变的表型。抑制PDGF信号在体外抑制cMSC-肌成纤维细胞分化,而在建立的缺血性HF期间的体内抑制减轻了左心室重构和功能,减少心肌纤维化,肥大,和炎症。因此,调节cMSCPDGF受体表达可能代表了一种限制HF病理性心脏纤维化的新方法。
    Heart failure (HF) is characterized by progressive fibrosis. Both fibroblasts and mesenchymal stem cells (MSCs) can differentiate into pro-fibrotic myofibroblasts. MSCs secrete and express platelet-derived growth factor (PDGF) and its receptors. We hypothesized that PDGF signaling in cardiac MSCs (cMSCs) promotes their myofibroblast differentiation and aggravates post-myocardial infarction left ventricular remodeling and fibrosis. We show that cMSCs from failing hearts post-myocardial infarction exhibit an altered phenotype. Inhibition of PDGF signaling in vitro inhibited cMSC-myofibroblast differentiation, whereas in vivo inhibition during established ischemic HF alleviated left ventricular remodeling and function, and decreased myocardial fibrosis, hypertrophy, and inflammation. Modulating cMSC PDGF receptor expression may thus represent a novel approach to limit pathologic cardiac fibrosis in HF.
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  • 文章类型: Journal Article
    只有引入杂交瘤技术,才能分离针对给定抗原的单个单克隆抗体(mAb)。这是基于特定B淋巴细胞与骨髓瘤细胞的融合。从那以后,几种单克隆抗体被描述为治疗性的,诊断,和研究目的。尽管是一种复杂度低的老技术,基于杂交瘤的策略具有局限性,包括B淋巴细胞-骨髓瘤细胞融合步骤的低效率,以及使用实验动物的需要。面对这一点,已经开发了几种方法来提高mAb的产生,从杂交瘤技术的变化到全新技术的出现,如抗体噬菌体展示和单个B细胞抗体。在这次审查中,我们讨论了杂交瘤技术以及新兴的mAb分离方法,考虑到它们的优点和局限性。最后,我们探索当今杂交瘤技术的有用性。
    The isolation of single monoclonal antibodies (mAbs) against a given antigen was only possible with the introduction of the hybridoma technology, which is based on the fusion of specific B lymphocytes with myeloma cells. Since then, several mAbs were described for therapeutic, diagnostic, and research purposes. Despite being an old technique with low complexity, hybridoma-based strategies have limitations that include the low efficiency on B lymphocyte-myeloma cell fusion step, and the need to use experimental animals. In face of that, several methods have been developed to improve mAb generation, ranging from changes in hybridoma technique to the advent of completely new technologies, such as the antibody phage display and the single B cell antibody ones. In this review, we discuss the hybridoma technology along with emerging mAb isolation approaches, taking into account their advantages and limitations. Finally, we explore the usefulness of the hybridoma technology nowadays.
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  • 文章类型: Journal Article
    肺是癌症转移的最常见部位之一。肺中的胶原提供了允许的微环境,其支持播散的肿瘤细胞的定植和生长。因此,下调胶原蛋白的产生可能有助于抑制肺转移。已经表明miR-29通过负调节胶原蛋白的表达而表现出有效的抗纤维化活性。的确,我们的肺肿瘤临床数据显示,miR-29a-3p表达与肺肿瘤中I型胶原表达呈负相关,与患者预后呈正相关.然而,需要选择合适的载体以将该治疗性miRNA递送至肺。在这项研究中,我们发现化疗药物顺铂促进miR-29a-3p在肺肿瘤细胞外泌体中的积累,这种类型的外泌体表现出特定的肺靶向作用和有希望的胶原蛋白下调。为了扩大准备范围并简化输送系统,我们设计了一个靶向肺的脂质体纳米囊泡(通过将DOTAP/胆固醇-miRNA的摩尔比调整为4:1)来携带miR-29a-3p并模拟外泌体.这种脂质体纳米囊泡递送系统在体内显著下调肺成纤维细胞I型胶原的分泌,从而缓解循环肺肿瘤细胞的促转移环境的建立。
    The lung is one of the most common sites for cancer metastasis. Collagens in the lung provide a permissive microenvironment that supports the colonization and outgrowth of disseminated tumor cells. Therefore, down-regulating the production of collagens may contribute to the inhibition of lung metastasis. It has been suggested that miR-29 exhibits effective anti-fibrotic activity by negatively regulating the expression of collagens. Indeed, our clinical lung tumor data shows that miR-29a-3p expression negatively correlates with collagen I expression in lung tumors and positively correlates with patients\' outcomes. However, suitable carriers need to be selected to deliver this therapeutic miRNA to the lungs. In this study, we found that the chemotherapy drug cisplatin facilitated miR-29a-3p accumulation in the exosomes of lung tumor cells, and this type of exosomes exhibited a specific lung-targeting effect and promising collagen down-regulation. To scale up the preparation and simplify the delivery system, we designed a lung-targeting liposomal nanovesicle (by adjusting the molar ratio of DOTAP/cholesterol-miRNAs to 4:1) to carry miR-29a-3p and mimic the exosomes. This liposomal nanovesicle delivery system significantly down-regulated collagen I secretion by lung fibroblasts in vivo, thus alleviating the establishment of a pro-metastatic environment for circulating lung tumor cells.
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  • 文章类型: Journal Article
    背景:骨肉瘤是最常见的含有间充质细胞的原发性恶性骨肿瘤,预后较差。是抗肿瘤治疗研究的热点,AKT/哺乳动物雷帕霉素靶蛋白(mTOR)信号通路可影响多种细胞过程,包括转录,蛋白质合成,凋亡,自噬和生长。
    方法:分别通过定量实时聚合酶链反应(q-PCR)和蛋白质印迹分析检测RNA和蛋白质的水平。进行功能测定以分析骨肉瘤细胞的恶性表型。RNA结合蛋白免疫沉淀(RIP),免疫共沉淀(Co-IP),RNA下拉,进行荧光素酶报告基因和体外激酶测定以揭示微小RNA-451a(miR-451a)在骨肉瘤细胞中的特定机制。
    结果:功能上,miR-451a抑制骨肉瘤的恶性进展。机械上,miR-451a可以通过3-磷酸肌醇依赖性蛋白激酶1(PDPK1)介导的磷酸化修饰来抑制AKT/mTOR途径。经证实YTH域含1(YTHDC1)调控PDPK1mRNA的m6A磷酸化修饰,我们进一步证明miR-451a介导的YTHDC1通过m6A依赖性调节稳定PDPK1mRNA。
    结论:这项研究表明,miR-451a调节YTHDC1介导的m6A甲基化以激活AKT/mTOR通路,刺激骨肉瘤的恶性肿瘤。
    BACKGROUND: Osteosarcoma is the most prevalent primary malignant bone tumor containing mesenchymal cells with poor prognosis. Being a hot spot of anti-tumor therapy researches, AKT/mammalian target of rapamycin (mTOR) signaling pathway could affect various cellular processes including transcription, protein synthesis, apoptosis, autophagy and growth.
    METHODS: The levels of RNA and protein were detected by quantitative real-time polymerase chain reaction (q-PCR) and western blot analyses respectively. Functional assays were carried out to analyze the malignant phenotypes of osteosarcoma cells. RNA-binding protein immunoprecipitation (RIP), Co-immunoprecipitation (Co-IP), RNA pulldown, luciferase reporter and in vitro kinase assays were conducted to uncover the specific mechanism of microRNA-451a (miR-451a) in osteosarcoma cells.
    RESULTS: Functionally, miR-451a represses the malignant progression of osteosarcoma. Mechanically, miR-451a could curb the AKT/mTOR pathway via 3-phosphoinositide dependent protein kinase 1 (PDPK1)-mediated phosphorylation modification. After the certification that YTH domain containing 1 (YTHDC1) regulates the m6A phosphorylation modification of PDPK1 mRNA, we further proved that miR-451a-mediated YTHDC1 stabilizes PDPK1 mRNA via m6A-dependent regulation.
    CONCLUSIONS: This study demonstrated that miR-451a regulates YTHDC1-mediated m6A methylation to activate the AKT/mTOR pathway, stimulating the malignancy of osteosarcoma.
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  • 文章类型: Journal Article
    目的:已知血清microRNA(miRNA)水平在非酒精性脂肪性肝病(NAFLD)中发生变化,并且可以作为有用的生物标志物。这项研究旨在全面分析所有NAFLD阶段的miRNA。
    方法:我们在一个发现队列中分析了2,083个血清miRNA(183例NAFLD代表完整的NAFLD谱和10个群体对照)。通过IlluminaNextSeq测序由HTGEdgeSeq产生的miRNA文库。通过定量逆转录酶PCR,在372例其他NAFLD病例和15例人群对照中对选定的血清miRNA进行了分析。
    结果:275个miRNA的水平在病例和群体对照之间存在差异。在单个NAFLD阶段中看到的差异较少,但miR-193a-5p在所有比较中均显示水平升高.相对于NAFL/非酒精性脂肪性肝炎(NASH)伴轻度纤维化(0/1期),3个miRNA(miR-193a-5p,miR-378d,和miR378d)在NASH和临床显着纤维化(2-4期)的病例中增加,7(miR193a-5p,miR-378d,miR-378e,miR-320b,miR-320c,miR-320d,和miR-320e)在NAFLD活性评分(NAS)5-8的病例中增加,而NAS较低,和3(miR-193a-5p,miR-378d,和miR-378e)增加,但1(miR-19b-3p)在脂肪变性中减少,活动,与较低的SAF活性相比,纤维化(SAF)活性评分2-4。miR-193a-5p的显著发现在患有NAFLD的额外队列中重复。对HepG2细胞的研究表明,棕榈酸处理后,miR-193a-5p表达显著下降。在病例亚组(n=80)的肝脏RNAseq数据中研究了miR-193a-5p的基因靶标;肝脏GPX8水平与血清miR-193a-5p呈正相关。
    结论:血清miR-193a-5p水平与NAFLD活性分级和纤维化分期密切相关。MiR-193a-5p可能在肝脏对氧化应激的反应中起作用,并且是进行性NAFLD的潜在临床可处理的循环生物标志物。
    背景:微RNA(miRNA)是可以打开或关闭基因表达的小核酸片段。这些分子可以在血液循环中检测到,在包括非酒精性脂肪性肝病(NAFLD)在内的肝病中,它们在血液中的水平可能会发生变化。看看我们是否能检测到与晚期NAFLD相关的特定miRNA,我们对183例不同严重程度的NAFLD患者和10例对照人群进行了miRNA测序.我们发现许多miRNA显示出变化,主要是增加,但1个特定的miRNAmiR-193a-5p持续增加。我们在第二组NAFLD病例中证实了这种增加。测量血液样品中的这种miRNA可能是确定患者是否患有晚期NAFLD而没有侵入性肝活检的有用方法。
    OBJECTIVE: Serum microRNA (miRNA) levels are known to change in non-alcoholic fatty liver disease (NAFLD) and may serve as useful biomarkers. This study aimed to profile miRNAs comprehensively at all NAFLD stages.
    METHODS: We profiled 2,083 serum miRNAs in a discovery cohort (183 cases with NAFLD representing the complete NAFLD spectrum and 10 population controls). miRNA libraries generated by HTG EdgeSeq were sequenced by Illumina NextSeq. Selected serum miRNAs were profiled in 372 additional cases with NAFLD and 15 population controls by quantitative reverse transcriptase PCR.
    RESULTS: Levels of 275 miRNAs differed between cases and population controls. Fewer differences were seen within individual NAFLD stages, but miR-193a-5p consistently showed increased levels in all comparisons. Relative to NAFL/non-alcoholic steatohepatitis (NASH) with mild fibrosis (stage 0/1), 3 miRNAs (miR-193a-5p, miR-378d, and miR378d) were increased in cases with NASH and clinically significant fibrosis (stages 2-4), 7 (miR193a-5p, miR-378d, miR-378e, miR-320b, miR-320c, miR-320d, and miR-320e) increased in cases with NAFLD activity score (NAS) 5-8 compared with lower NAS, and 3 (miR-193a-5p, miR-378d, and miR-378e) increased but 1 (miR-19b-3p) decreased in steatosis, activity, and fibrosis (SAF) activity score 2-4 compared with lower SAF activity. The significant findings for miR-193a-5p were replicated in the additional cohort with NAFLD. Studies in Hep G2 cells showed that following palmitic acid treatment, miR-193a-5p expression decreased significantly. Gene targets for miR-193a-5p were investigated in liver RNAseq data for a case subgroup (n = 80); liver GPX8 levels correlated positively with serum miR-193a-5p.
    CONCLUSIONS: Serum miR-193a-5p levels correlate strongly with NAFLD activity grade and fibrosis stage. MiR-193a-5p may have a role in the hepatic response to oxidative stress and is a potential clinically tractable circulating biomarker for progressive NAFLD.
    BACKGROUND: MicroRNAs (miRNAs) are small pieces of nucleic acid that may turn expression of genes on or off. These molecules can be detected in the blood circulation, and their levels in blood may change in liver disease including non-alcoholic fatty liver disease (NAFLD). To see if we could detect specific miRNA associated with advanced stages of NAFLD, we carried out miRNA sequencing in a group of 183 patients with NAFLD of varying severity together with 10 population controls. We found that a number of miRNAs showed changes, mainly increases, in serum levels but that 1 particular miRNA miR-193a-5p consistently increased. We confirmed this increase in a second group of cases with NAFLD. Measuring this miRNA in a blood sample may be a useful way to determine whether a patient has advanced NAFLD without an invasive liver biopsy.
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  • 文章类型: Journal Article
    UNASSIGNED: The development of novel and efficient biomarkers for primary bone cancers is of grave importance.
    UNASSIGNED: The expression pattern of osteopontin (OPN) was investigated in the 153 patients with benign (n = 72) and malignant (n = 81) primary bone cancers. Both local and circulating OPN mRNA expression levels and their protein concentration in serum and tumor site were assessed using real-time qRT-PCR, ELISA, and immunohistochemistry techniques, respectively. As a control, 29 healthy individuals were considered. The number of 153 tumor tissue specimens and the 153 paired margins were taken on surgical resection from the patients. 153 blood samples were also drained from all participants, then peripheral blood mononuclear cells (PBMC) and sera were separated.
    UNASSIGNED: The mean mRNA expression was significantly higher in all of the cancerous tissues than the paired margins and the PBMC of the patients than the controls. Consistently, the protein concentrations of OPN in serum and tumor tissues were significantly higher in the patients. Furthermore, the malignant cases had significantly elevated the mRNA levels and the protein compared to the benign cases. OPN could potentially differentiate the patients from the controls with 100% sensitivity and specificity in serum. Moreover, OPN could predict some of the malignant cases\' clinicopathological features, including metastasis, recurrence, grade, and response to chemotherapy.
    UNASSIGNED: In conclusion, OPN might be involved in the pathogenesis of primary bone tumors and can be considered as a potential biomarker to bone cancer diagnosis.
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