breast mass classification

乳腺肿块分类
  • 文章类型: Journal Article
    在所有类型的癌症中,乳腺癌已成为英国最常见的癌症之一,威胁着数百万人的健康。早期发现乳腺癌对及时治疗降低发病率起着关键作用。与活检相比,从病变中取出组织进行进一步分析,基于图像的方法耗时少且无痛,尽管由于高的假阳性率而受到较低的准确性的阻碍。然而,乳腺X线摄影因其效率高、成本低、性能好等优点已成为一种标准的筛查方法。乳房肿块,作为乳腺癌最明显的症状,受到了社会各界的广泛关注。因此,过去的几十年见证了计算机辅助系统的快速发展,旨在为放射科医生提供基于乳房X线照片的乳房肿块分析有用的工具。然而,这些系统的主要问题包括精度低,并且在大规模数据集上需要足够的计算能力。为了解决这些问题,我们开发了一种称为DF-dRVFL的新型乳腺肿块分类系统。在拥有3500多个图像的公共数据集DDSM上,我们基于深度随机向量功能链接网络的最佳模型通过5个交叉验证显示了有希望的结果,平均AUC为0.93,平均准确率为81.71%.与唯一基于深度学习的方法相比,平均准确度提高了0.38。与最先进的方法相比,我们的方法显示出更好的性能,考虑到评估图像的数量和整体精度。
    Amongst all types of cancer, breast cancer has become one of the most common cancers in the UK threatening millions of people\'s health. Early detection of breast cancer plays a key role in timely treatment for morbidity reduction. Compared to biopsy, which takes tissues from the lesion for further analysis, image-based methods are less time-consuming and pain-free though they are hampered by lower accuracy due to high false positivity rates. Nevertheless, mammography has become a standard screening method due to its high efficiency and low cost with promising performance. Breast mass, as the most palpable symptom of breast cancer, has received wide attention from the community. As a result, the past decades have witnessed the speeding development of computer-aided systems that are aimed at providing radiologists with useful tools for breast mass analysis based on mammograms. However, the main issues of these systems include low accuracy and require enough computational power on a large scale of datasets. To solve these issues, we developed a novel breast mass classification system called DF-dRVFL. On the public dataset DDSM with more than 3500 images, our best model based on deep random vector functional link network showed promising results through five-cross validation with an averaged AUC of 0.93 and an average accuracy of 81.71%. Compared to sole deep learning based methods, average accuracy has increased by 0.38. Compared with the state-of-the-art methods, our method showed better performance considering the number of images for evaluation and the overall accuracy.
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  • 文章类型: Journal Article
    在本文中,我们提出了一种新的深度学习方法,用于基于射频(RF)超声(US)数据对乳腺肿块进行联合分类和分割。与常用的分类和分割技术相比,利用B模式美国图像,我们用RF数据(包络检测和动态压缩之前的数据)训练网络,与标准B模式US图像相比,这些图像被认为包括更多关于组织物理属性的信息。我们的多任务网络,基于Y-Net架构,可以通过混合1D和2D卷积滤波器有效地处理大量的RF数据矩阵。我们使用从273个乳房肿块收集的数据来比较用RF数据和US图像训练的网络的性能。基于射频数据开发的多任务模型取得了良好的分类性能,受试者工作特征曲线下面积(AUC)为0.90。基于美国图像的网络实现了0.87的AUC。在分割的情况下,我们利用美国图像和射频数据获得的方法的平均Dice评分为0.64和0.60,分别。此外,使用类激活映射技术和过滤器权重可视化研究了网络的可解释性。
    In this paper, we propose a novel deep learning method for joint classification and segmentation of breast masses based on radio-frequency (RF) ultrasound (US) data. In comparison to commonly used classification and segmentation techniques, utilizing B-mode US images, we train the network with RF data (data before envelope detection and dynamic compression), which are considered to include more information on tissue\'s physical properties than standard B-mode US images. Our multi-task network, based on the Y-Net architecture, can effectively process large matrices of RF data by mixing 1D and 2D convolutional filters. We use data collected from 273 breast masses to compare the performance of networks trained with RF data and US images. The multi-task model developed based on the RF data achieved good classification performance, with area under the receiver operating characteristic curve (AUC) of 0.90. The network based on the US images achieved AUC of 0.87. In the case of the segmentation, we obtained mean Dice scores of 0.64 and 0.60 for the approaches utilizing US images and RF data, respectively. Moreover, the interpretability of the networks was studied using class activation mapping technique and by filter weights visualizations.
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  • 文章类型: Journal Article
    肿块是乳腺癌的早期征兆之一,如果可以正确地将肿块识别为良性或恶性,则可以提高患有乳腺癌的妇女的生存率。然而,由于两种质量的纹理模式相似,它们的分类具有挑战性。针对该问题的现有方法具有低的灵敏度和特异性。基于以下假设:质量区域的不同上下文信息构成了区分良性和恶性质量的强大指标,以及集成分类器的思想,我们介绍了一个计算机辅助系统来解决这个问题。该系统使用多个感兴趣区域(ROI),其中包含大量区域,用于对各种上下文信息进行建模。单个ResNet-50模型(或其密度特定的修改)作为本地决策的骨干,并以SVM作为基础模型进行叠加,以预测最终决策。引入了一种数据增强技术来微调骨干模型。该系统使用其提供的数据拆分协议在基准CBIS-DDSM数据集上进行了彻底评估,灵敏度为98.48%,特异性为92.31%。此外,发现如果使用来自特定乳腺密度BI-RADS类的数据进行训练和测试,则该系统具有更高的性能。该系统不需要微调/训练多个CNN模型;它通过多个ROI引入不同的上下文信息。比较表明,该方法优于将肿块区域分类为良性和恶性的最新方法。这将有助于放射科医生减轻负担并提高其在恶性肿块预测中的敏感性。
    Masses are one of the early signs of breast cancer, and the survival rate of women suffering from breast cancer can be improved if masses can be correctly identified as benign or malignant. However, their classification is challenging due to the similarity in texture patterns of both types of mass. The existing methods for this problem have low sensitivity and specificity. Based on the hypothesis that diverse contextual information of a mass region forms a strong indicator for discriminating benign and malignant masses and the idea of the ensemble classifier, we introduce a computer-aided system for this problem. The system uses multiple regions of interest (ROIs) encompassing a mass region for modeling diverse contextual information, a single ResNet-50 model (or its density-specific modification) as a backbone for local decisions, and stacking with SVM as a base model to predict the final decision. A data augmentation technique is introduced for fine-tuning the backbone model. The system was thoroughly evaluated on the benchmark CBIS-DDSM dataset using its provided data split protocol, and it achieved a sensitivity of 98.48% and a specificity of 92.31%. Furthermore, it was found that the system gives higher performance if it is trained and tested using the data from a specific breast density BI-RADS class. The system does not need to fine-tune/train multiple CNN models; it introduces diverse contextual information by multiple ROIs. The comparison shows that the method outperforms the state-of-the-art methods for classifying mass regions into benign and malignant. It will help radiologists reduce their burden and enhance their sensitivity in the prediction of malignant masses.
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  • 文章类型: Journal Article
    卷积神经网络(CNN)是一种有前途的技术,用于基于乳房X线照片检测乳腺癌。从头开始训练CNN,然而,需要大量的标记数据。这样的要求对于诸如乳房摄影肿瘤图像的某些种类的医学图像数据通常是不可行的。由于改善CNN分类器的性能需要更多的训练数据,创造新的训练图像,图像增强,是解决这个问题的一个办法。我们应用了生成对抗网络(GAN)从数字数据库中生成合成乳房X线摄影图像,以筛查乳房X线摄影(DDSM)。从DDSM,我们从图像中裁剪出两组感兴趣区域(ROI):正常和异常(癌症/肿瘤)。那些ROI是用来训练GAN的,然后GAN生成合成图像。为了与仿射变换增强方法进行比较,比如旋转,shifting,缩放,等。,我们使用了六组ROI[三个简单组:仿射增强,GAN合成,真实(原始),和三个简单组中任何两个的三个混合组],用于从头开始训练CNN分类器。And,我们使用了训练中未使用的真实ROI来验证分类结果.我们的研究结果表明,为了对DDSM中的正常ROI和异常ROI进行分类,在训练数据中添加GAN生成的ROI可以帮助分类器防止过拟合,以及验证准确性,GAN的图像增强性能比仿射变换好3.6%。因此,GAN可能是一种理想的增强方法。通过GAN或仿射变换增强的图像不能替代真实图像来训练CNN分类器,因为训练集中缺少真实图像会导致过度拟合。
    The convolutional neural network (CNN) is a promising technique to detect breast cancer based on mammograms. Training the CNN from scratch, however, requires a large amount of labeled data. Such a requirement usually is infeasible for some kinds of medical image data such as mammographic tumor images. Because improvement of the performance of a CNN classifier requires more training data, the creation of new training images, image augmentation, is one solution to this problem. We applied the generative adversarial network (GAN) to generate synthetic mammographic images from the digital database for screening mammography (DDSM). From the DDSM, we cropped two sets of regions of interest (ROIs) from the images: normal and abnormal (cancer/tumor). Those ROIs were used to train the GAN, and the GAN then generated synthetic images. For comparison with the affine transformation augmentation methods, such as rotation, shifting, scaling, etc., we used six groups of ROIs [three simple groups: affine augmented, GAN synthetic, real (original), and three mixture groups of any two of the three simple groups] for each to train a CNN classifier from scratch. And, we used real ROIs that were not used in training to validate classification outcomes. Our results show that, to classify the normal ROIs and abnormal ROIs from DDSM, adding GAN-generated ROIs in the training data can help the classifier prevent overfitting, and on validation accuracy, the GAN performs about 3.6% better than affine transformations for image augmentation. Therefore, GAN could be an ideal augmentation approach. The images augmented by GAN or affine transformation cannot substitute for real images to train CNN classifiers because the absence of real images in the training set will cause over-fitting.
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  • 文章类型: Journal Article
    OBJECTIVE: We propose a deep learning-based approach to breast mass classification in sonography and compare it with the assessment of four experienced radiologists employing breast imaging reporting and data system 4th edition lexicon and assessment protocol.
    METHODS: Several transfer learning techniques are employed to develop classifiers based on a set of 882 ultrasound images of breast masses. Additionally, we introduce the concept of a matching layer. The aim of this layer is to rescale pixel intensities of the grayscale ultrasound images and convert those images to red, green, blue (RGB) to more efficiently utilize the discriminative power of the convolutional neural network pretrained on the ImageNet dataset. We present how this conversion can be determined during fine-tuning using back-propagation. Next, we compare the performance of the transfer learning techniques with and without the color conversion. To show the usefulness of our approach, we additionally evaluate it using two publicly available datasets.
    RESULTS: Color conversion increased the areas under the receiver operating curve for each transfer learning method. For the better-performing approach utilizing the fine-tuning and the matching layer, the area under the curve was equal to 0.936 on a test set of 150 cases. The areas under the curves for the radiologists reading the same set of cases ranged from 0.806 to 0.882. In the case of the two separate datasets, utilizing the proposed approach we achieved areas under the curve of around 0.890.
    CONCLUSIONS: The concept of the matching layer is generalizable and can be used to improve the overall performance of the transfer learning techniques using deep convolutional neural networks. When fully developed as a clinical tool, the methods proposed in this paper have the potential to help radiologists with breast mass classification in ultrasound.
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  • 文章类型: Journal Article
    To develop and test a deep learning based computer-aided diagnosis (CAD) scheme of mammograms for classifying between malignant and benign masses.
    An image dataset involving 560 regions of interest (ROIs) extracted from digital mammograms was used. After down-sampling each ROI from 512×512 to 64×64 pixel size, we applied an 8 layer deep learning network that involves 3 pairs of convolution-max-pooling layers for automatic feature extraction and a multiple layer perceptron (MLP) classifier for feature categorization to process ROIs. The 3 pairs of convolution layers contain 20, 10, and 5 feature maps, respectively. Each convolution layer is connected with a max-pooling layer to improve the feature robustness. The output of the sixth layer is fully connected with a MLP classifier, which is composed of one hidden layer and one logistic regression layer. The network then generates a classification score to predict the likelihood of ROI depicting a malignant mass. A four-fold cross validation method was applied to train and test this deep learning network.
    The results revealed that this CAD scheme yields an area under the receiver operation characteristic curve (AUC) of 0.696±0.044, 0.802±0.037, 0.836±0.036, and 0.822±0.035 for fold 1 to 4 testing datasets, respectively. The overall AUC of the entire dataset is 0.790±0.019.
    This study demonstrates the feasibility of applying a deep learning based CAD scheme to classify between malignant and benign breast masses without a lesion segmentation, image feature computation and selection process.
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  • 文章类型: Journal Article
    分割算法的评估通常涉及将分割与黄金标准轮廓进行比较,而不考虑最终的医疗决策任务。我们比较了两种分割评估方法-Dice相似性系数(DSC)评估和使用乳腺计算机断层扫描病变的基于诊断分类任务的评估方法。在我们的调查中,我们使用两种先前开发的病变分割算法[一种是全局活动轮廓模型(GAC),另一种是具有局部方面的全局活动轮廓模型]的结果.尽管获得了相似的DSC值(0.80对0.77),我们证明了全局+局部活动轮廓(GLAC)模型,与广汽模型相比,在区分恶性和良性病变的任务中,能够在接收器操作特征(ROC)曲线下的面积方面产生显着改善的分类性能。[[公式:见文本]下的面积与0.63相比,[公式:见文本]]。这主要是因为GLAC模型产生了形态学特征计算所需的更好的详细信息。根据我们的发现,我们得出的结论是,在计算机辅助诊断任务中,仅DSC指标不足以评估分割病变。
    Evaluation of segmentation algorithms usually involves comparisons of segmentations to gold-standard delineations without regard to the ultimate medical decision-making task. We compare two segmentation evaluations methods-a Dice similarity coefficient (DSC) evaluation and a diagnostic classification task-based evaluation method using lesions from breast computed tomography. In our investigation, we use results from two previously developed lesion-segmentation algorithms [a global active contour model (GAC) and a global with local aspects active contour model]. Although similar DSC values were obtained (0.80 versus 0.77), we show that the global + local active contour (GLAC) model, as compared with the GAC model, is able to yield significantly improved classification performance in terms of area under the receivers operating characteristic (ROC) curve in the task of distinguishing malignant from benign lesions. [Area under the [Formula: see text] compared to 0.63, [Formula: see text]]. This is mainly because the GLAC model yields better detailed information required in the calculation of morphological features. Based on our findings, we conclude that the DSC metric alone is not sufficient for evaluating segmentation lesions in computer-aided diagnosis tasks.
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  • 文章类型: Journal Article
    Nakagami imaging is an attractive tissue characterization method, as the parameter estimated at each location is related to properties of the tissues. The application to clinical ultrasound images is problematic, as the estimation of the parameters is disturbed by the presence of complex structures. We propose to consider separately the different aspects potentially affecting the value of the Nakagami parameters and quantify their effects on the estimation. This framework is applied to the classification of breast masses. Quantitative parameters are computed on two groups of ultrasound images of benign and malignant tumors. A statistical analysis of the result indicated that the previously observed difference between average values of the Nakagami parameters is explained mostly by estimation errors. In the future, new methods for reliable computation of Nakagami parameters need to be developed, and factors of error should be considered in studies using Nakagami parameters.
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