bioreactor

生物反应器
  • 文章类型: Journal Article
    粉防己碱,一种主要存在于Stephaniatetrandra根中的生物活性化合物,表现出各种药理特性。体外毛状根(HR)培养可能是汉防己碱提取的有希望的解决方案,克服自然栽培的局限性。本研究描述了发根农杆菌不同菌株诱导的粉防己碱的一致生产。与其他培养基相比,在木本植物培养基(WPM)中的培养导致最高的HR生物量(0.056g/培养皿)和粉防己碱含量(7.28mg/L)。在培养的第五周获得了最大的HR生物量(6.95gdw/L)和粉防己碱产量(68.69mg/L)。硝酸铵的存在(800毫克/升),硝酸钙(1156毫克/升),蔗糖(20g/L)和酪蛋白(2g/L)提高了粉防己碱的产量。此外,补料分批培养表明,NH4NO3(1200mg/L)是重要的生长限制因子,产生的粉防己碱含量最高(119.59mg/L)。在雾滴生物反应器中培养8周的毛状根的培养比在烧瓶中的培养少(26.24mg/L)。尽管与烧瓶培养物相比,在生物反应器中观察到的粉防己碱产量较低,精炼生长培养基和微调生物反应器操作有望提高粉防己碱的产量。
    Tetrandrine, a bioactive active compound mainly found in the roots of Stephania tetrandra, exhibits various pharmacological properties. In vitro hairy root (HR) culture may serve as a promising solution for the extraction of tetrandrine, overcoming the limitations of natural cultivation. The present study describes the consistent production of tetrandrine from S. tetrandra hairy roots induced by different strains of Agrobacterium rhizogenes. Cultivation in woody plant medium (WPM) resulted in the highest HR biomass (0.056 g/petri-dish) and tetrandrine content (7.28 mg/L) as compared to other media. The maximum HR biomass (6.95 g dw/L) and tetrandrine production (68.69 mg/L) were obtained in the fifth week of cultivation. The presence of ammonium nitrate (800 mg/L), calcium nitrate (1156 mg/L), sucrose (20 g/L) and casein (2 g/L) enhanced the tetrandrine production. Moreover, the fed-batch cultivation demonstrated that the NH4NO3 (1200 mg/L) was an important growth limiting factor that yielded the highest tetrandrine amount (119.59 mg/L). The cultivation of hairy roots in a mist trickling bioreactor for eight weeks was less (26.24 mg/L) than in the flask. Despite a lower tetrandrine yield observed in bioreactors compared to flask cultures, refining the growth medium and fine-tuning bioreactor operations hold promise for boosting tetrandrine yield.
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  • 文章类型: Journal Article
    芳香化合物在水生和陆地环境中作为危险污染物持续存在,需要快速有效的补救策略。本研究在柱实验中评估了硫酸盐和硝酸盐还原条件下甲苯和苯的生物降解,利用受污染地点的含水层沉积物。在36周的时间里,在交替流动分批方案中同时操作四个玻璃柱。每个柱接收硝酸盐或硫酸盐作为电子受体,同时以不同的暴露顺序暴露于不同的底物组合物。观察到氧化还原依赖性污染物去除效率,在硫酸盐和硝酸盐还原条件下,甲苯的去除效率分别为81%和55%,苯的去除效率约为44%和59%,分别,在4到6周内。厌氧条件下的快速去除归因于交替流动-分批方案,允许生物质以分批模式生长,并在流动过程中对非特异性生物降解剂施加选择压力。甲苯的去除不受苯存在的影响,但在由BTEX组成的芳族混合物存在下表现出轻微的抑制作用,茚,indane,还有萘。在甲苯存在下,苯的去除效率降至8%,但不受混合物的影响。当进一步面对更复杂的混合物时,预暴露于单一化合物可提高分解效率。此外,在四个柱上进行的β-多样性分析揭示了硫酸盐和硝酸盐还原条件之间不同的微生物群落聚集,强调氧化还原条件的决定作用。这项研究的结果可用于制定更有效的污染清理策略,特别是针对氧化还原条件等参数,底物相互作用,和污染历史,从而提高我们在不同环境中减轻污染的能力。
    Aromatic compounds persist as hazardous contaminants in both aquatic and terrestrial environments, needing rapid and effective remediation strategies. This study evaluated toluene and benzene biodegradation under sulfate and nitrate-reducing conditions in column experiments, utilizing aquifer sediments from a contaminated site. Over a period of 36 weeks, four glass columns were operated simultaneously in an alternating flow-batch regime. Each column received either nitrate or sulfate as an electron acceptor while being exposed to different substrate compositions in varied exposure orders. A redox dependent contaminant removal efficiency was observed, with toluene removal efficiency at 81% under sulfate and 55% under nitrate-reducing conditions, and benzene removal efficiency approximately at 44% and 59%, respectively, within 4 to 6 weeks. The rapid removal under anaerobic conditions was attributed to the alternating flow-batch regime, allowing biomass growth in batch mode, and applying selection pressure to non-specific biodegraders during flow regime. Toluene removal remained unaffected by benzene\'s presence but exhibited slight inhibition in the presence of an aromatic mixture composed of BTEX, indene, indane, and naphthalene. Benzene removal efficiency dropped to 8% in the presence of toluene but remained unaffected by the mixture. Pre-exposure to a single compound enhanced breakdown efficiency when further faced with a more complex mixture. Additionally, beta-diversity analysis conducted on the four columns revealed distinct microbial community clustering between sulfate and nitrate-reducing conditions, emphasizing the determining role of redox conditions. Findings of this study can be used to develop more effective pollution cleanup strategies, specifically targeting parameters like redox conditions, substrate interactions, and pollution history, thus improving our ability to mitigate contamination across diverse environments.
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  • 文章类型: Journal Article
    本研究旨在开发一种离体器官芯片模型,椎间盘-a-ChipMF,研究机械负荷和营养对椎间盘健康的综合影响。该系统由一个可拆卸的多层微流控芯片组成,基于Arduino的计算机控制系统,和一个机械加载单元,对其进行了优化,以进行精确的轴向力测量和维持21天的离体椎间盘培养。为了确保轴向力的准确性,我们优化了轴向机械加载方案,使用基于Computer-Arduino的系统和低轮廓力传感器(LPFS)来控制机械加载单元,并通过计算模拟对力的分布进行建模。使用Disc-on-a-ChipMF系统证明了21天的离体椎间盘培养,具有优化的机械负载(1Hz时为0.02MPa,1.5小时/天)和流速(1μL/min)。结构的完整性,胶原蛋白分解,分解代谢酶活性,和椎间盘细胞和胶原蛋白排列显示,芯片上培养的椎间盘表现出与天然椎间盘相似的首选椎间盘健康状况长达21天,而静态培养中的椎间盘显示出有害的退行性变化。小鼠Disc-on-a-ChipMF系统模拟体内椎间盘微环境,为研究各种因素对椎间盘健康和退化的影响以及测试新疗法提供了有价值的平台。
    This study aims to develop an ex vivo organ-on-a-chip model, intervertebral Disc-on-a-ChipMF, to investigate integrated effects of mechanical loading and nutrition on disc health. The system consists of a detachable multilayer microfluidic chip, a Computer-Arduino-based control system, and a mechanical loading unit, which were optimized for accurate axial force measurement and the maintenance of a 21-day ex vivo disc culture. To ensure accuracy of axial force, we optimized the axial mechanical loading regimen, used the Computer-Arduino-based system and low-profile force sensors (LPFS) to control the mechanical loading unit, and modeled the force distribution by using computational simulation. A 21-day ex vivo disc culture was demonstrated using the Disc-on-a-ChipMF system, with optimized mechanical loading (0.02 MPa at 1Hz, 1.5 hr/day) and flow rate (1 μL/min). The structural integrity, collagen breakdown, catabolic enzyme activities, and disc cell and collagen alignment revealed that the on-chip cultured discs exhibited a preferred disc health similar to that of native discs for up to 21 days, while discs in a static culture showed detrimental degenerative changes. The mouse Disc-on-a-ChipMF system mimics in vivo disc microenvironment and provides a valuable platform for studying the effects of various factors on disc health and degeneration and testing new therapies.
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  • 文章类型: Journal Article
    载脂蛋白A-I(apoA-I),血浆高密度脂蛋白(HDL)的主要蛋白质成分,由两个结构区域组成,例如N-末端两亲性α-螺旋束结构域(残基1-184)和疏水性C-末端结构域(残基185-243)。当重组融合蛋白构建体[细菌pelB前导序列-人apoA-I(1-243)]在大肠杆菌摇瓶培养物中表达时,在细胞裂解物中回收apoA-I。相比之下,当C端结构域从构建体中删除时,大量截短的蛋白质,apoA-I(1-184),在培养基中回收。因此,在大肠杆菌周质空间中的pelB前导序列裂解之后,apoA-I(1-184)由细菌分泌。当pelB-apoA-I(1-184)融合构建体在5L生物反应器中表达时,大量泡沫产生(~30升)。泡沫收集并塌陷成液体泡沫后,SDS-PAGE显示apoA-I(1-184)是存在的唯一主要蛋白。apoA-I(1-184)与磷脂囊泡的孵育产生的重建HDL(rHDL)颗粒的大小和胆固醇流出能力与全长apoA-I产生的颗粒相似。质谱分析证实发生了pelB前导序列切割,并且泡沫分级分离没有导致不需要的蛋白质修饰。基于生物反应器的载脂蛋白泡沫分级分离的容易性质和可扩展性提供了一种产生通用rHDL支架蛋白的新方法。
    Apolipoprotein A-I (apoA-I), the primary protein component of plasma high-density lipoproteins (HDL), is comprised of two structural regions, an N-terminal amphipathic α-helix bundle domain (residues 1-184) and a hydrophobic C-terminal domain (residues 185-243). When a recombinant fusion protein construct [bacterial pelB leader sequence - human apoA-I (1-243)] was expressed in Escherichia coli shaker flask cultures, apoA-I was recovered in the cell lysate. By contrast, when the C-terminal domain was deleted from the construct, large amounts of the truncated protein, apoA-I (1-184), were recovered in the culture medium. Consequently, following pelB leader sequence cleavage in the E. coli periplasmic space, apoA-I (1-184) was secreted from the bacteria. When the pelB-apoA-I (1-184) fusion construct was expressed in a 5 L bioreactor, substantial foam production (~30 L) occurred. Upon foam collection and collapse into a liquid foamate, SDS-PAGE revealed that apoA-I (1-184) was the sole major protein present. Incubation of apoA-I (1-184) with phospholipid vesicles yielded reconstituted HDL (rHDL) particles that were similar in size and cholesterol efflux capacity to those generated with full-length apoA-I. Mass spectrometry analysis confirmed that pelB leader sequence cleavage occurred and that foam fractionation did not result in unwanted protein modifications. The facile nature and scalability of bioreactor-based apolipoprotein foam fractionation provide a novel means to generate a versatile rHDL scaffold protein.
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  • 文章类型: Journal Article
    大量功能性NK和CAR-NK细胞的产生代表了基于NK的免疫疗法的瓶颈之一。在这项研究中,我们开发了一个大规模的,可靠,使用G-Rex100M生物反应器进行切实可行的NK和CAR-NK生产,这取决于气体渗透膜技术。该系统容纳大量具有增强氧气输送的介质,为癌症治疗创造有利于大规模PBNK和CAR-NK扩增的条件。在这些生物反应器中扩增的外周血NK细胞(PBNK)和CAR-NK保留了相似的免疫表型,并对肝细胞癌(HCC)细胞表现出可比的细胞毒性,类似于在G-Rex6孔生物反应器中扩增的NK和CAR-NK细胞。重要的是,冷冻保存对使用G-Rex100M生物反应器扩增的NK细胞的细胞毒性影响最小,为扩大NK和CAR-NK细胞生产建立一个强大的平台。这种方法很有希望开发“现成的”NK细胞,支持NK细胞免疫治疗的未来临床实施。
    Production of large amounts of functional NK and CAR-NK cells represents one of the bottlenecks for NK-based immunotherapy. In this study, we developed a large-scale, reliable, and practicable NK and CAR-NK production using G-Rex 100M bioreactors, which depend on a gas-permeable membrane technology. This system holds large volumes of medium with enhanced oxygen delivery, creating conditions conducive to large-scale PBNK and CAR-NK expansions for cancer therapy. Both peripheral blood NK cells (PBNKs) and CAR-NKs expanded in these bioreactors retained similar immunophenotypes and exhibited comparable cytotoxicity towards hepatocellular carcinoma (HCC) cells akin to that of NK and CAR-NK cells expanded in G-Rex 6 well bioreactors. Importantly, cryopreservation minimally affected the cytotoxicity of NK cells expanded using the G-Rex 100M bioreactors, establishing a robust platform for scaled-up NK and CAR-NK cell production. This method is promising for the development of \"off-the-shelf\" NK cells, supporting the future clinical implementation of NK cell immunotherapy.
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  • 文章类型: Journal Article
    基于CO2的聚(3-羟基丁酸酯)(PHB)可以由多功能细菌Cupriavidusnecator在化学自养发酵中生产,使用由CO2、H2和O2组成的气体混合物。尽管为碳中和生物塑料制造提供了一条有利的途径,目前,它的采用受到所需气体混合物爆炸范围广的阻碍,以及有限的气液传质速率。为了应对这些挑战,压力发酵是一种稳健有效的策略,在通过遵守极限O2浓度确保安全操作的同时,利用最先进的生物反应器。因此,指数增长可能会延长,将基于CO2的PHB生产从1.5巴下的10.8g/L提高到3巴下的29.6g/L。生产增益与理论计算密切相关,除了当压力增加到4巴。总的来说,PHB产量的增加强调了压力发酵增强化学自养发酵的潜力。
    CO2-based poly(3-hydroxybutyrate) (PHB) can be produced by the versatile bacterium Cupriavidus necator through chemolithoautotrophic fermentation, using a gas mixture consisting of CO2, H2, and O2. Despite offering a propitious route for carbon-neutral bioplastic manufacturing, its adoption is currently hampered by the wide explosive range of the required gas mixture, as well as the limited gas-to-liquid mass transfer rates. To address these challenges, pressure fermentation was applied as a robust and effective strategy, while ensuring safe operation by adhering to the limiting O2 concentration, utilizing state-of-the-art bioreactors. Consequently, exponential growth could be prolonged, boosting CO2-based PHB production from 10.8 g/L at 1.5 bar up to 29.6 g/L at 3 bar. The production gain closely aligns with the theoretical calculations, except for when the pressure was increased up to 4 bar. Overall, the demonstrated increase in PHB production underscores the potential of pressure fermentation to enhance aerobic gas fermentation.
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  • 文章类型: Journal Article
    心血管疾病仍然是全球死亡的主要原因,动脉粥样硬化是一种重要的病理手段,常导致心肌梗塞.冠状动脉搭桥手术,用于治疗冠状动脉疾病的常见程序,由于有限的自体组织可用性或合成移植物的缺点,提出了挑战。因此,人们对开发血管替代物的组织工程方法越来越感兴趣。这篇评论提供了血管组织工程的最新技术,强调仿生方法的支架设计和动态培养条件。通过模拟原生血管属性,特别是,通过模仿血管壁的三层结构,组织工程移植物可以改善长期通畅性和临床结局.此外,正在进行的研究集中在通过创新的支架材料增强仿生,表面功能化策略,以及使用模拟生理微环境的生物反应器。通过多学科的视角,这篇综述提供了对血管组织工程的最新进展和未来方向的见解,特别是涉及采用仿生学来创建能够再现动脉壁中存在的结构-功能关系的系统。尽管台式创新和临床翻译之间存在差距,迄今为止开发的仿生技术似乎在实验室条件下和临床前研究中在预防由于凝血引起的血管闭塞方面显示出有希望的结果。因此,多方面的仿生方法可以代表一种成功的策略,以确保将血管组织工程转化为临床实践。
    Cardiovascular diseases remain a leading cause of mortality globally, with atherosclerosis representing a significant pathological means, often leading to myocardial infarction. Coronary artery bypass surgery, a common procedure used to treat coronary artery disease, presents challenges due to the limited autologous tissue availability or the shortcomings of synthetic grafts. Consequently, there is a growing interest in tissue engineering approaches to develop vascular substitutes. This review offers an updated picture of the state of the art in vascular tissue engineering, emphasising the design of scaffolds and dynamic culture conditions following a biomimetic approach. By emulating native vessel properties and, in particular, by mimicking the three-layer structure of the vascular wall, tissue-engineered grafts can improve long-term patency and clinical outcomes. Furthermore, ongoing research focuses on enhancing biomimicry through innovative scaffold materials, surface functionalisation strategies, and the use of bioreactors mimicking the physiological microenvironment. Through a multidisciplinary lens, this review provides insight into the latest advancements and future directions of vascular tissue engineering, with particular reference to employing biomimicry to create systems capable of reproducing the structure-function relationships present in the arterial wall. Despite the existence of a gap between benchtop innovation and clinical translation, it appears that the biomimetic technologies developed to date demonstrate promising results in preventing vascular occlusion due to blood clotting under laboratory conditions and in preclinical studies. Therefore, a multifaceted biomimetic approach could represent a winning strategy to ensure the translation of vascular tissue engineering into clinical practice.
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  • 文章类型: Journal Article
    目的:研究对人牙髓细胞(HDPCs)和变形链球菌的细胞毒性(S。mutans)在通用树脂复合水泥(UC)上形成生物膜。
    方法:三个UC(RelyXUniversal,3M口腔护理-RXU;PanaviaSA水泥通用,KurarayNoritake-PSAU;SoloCem,Coltene-SCM)和一种“黄金标准”多步水泥(PanaviaV5,KurarayNoritake-PV5)遵循两种聚合方案(光固化-LC;自固化-SC)。在直接接触1、3和7天后进行细胞毒性(MTT)测试。Carboxy-2\',7'-二氯二氢荧光素二乙酸酯用于检测活性氧(ROS)的释放,白细胞介素6(IL-6)的表达通过IL-6proquantum高灵敏度免疫测定进行分析。S.mutans生物膜在UCs样品上在生物反应器中生长24小时,然后使用MTT测定法评估粘附的活生物量。对于微生物程序,一半的UC样品经历了加速老化。数据进行统计学分析(α=0.05)。
    结果:PSAUSC的细胞毒性最高,RXUSC,在第1天和PV5SC,然后在3天后对SCRXU,和SCPSAU,1周后LCPV5和SCM(p<0.05)。1天后IL-6表达没有增加,而在3天和7天时,它根据组的不同而增加。12小时后ROS表达最高记录为PSAUSC,PV5SC和PV5LC。生物膜形成如下:RXU>>PSAU=PV5>SCM,而光固化系统地减少了生物膜的形成(≈-33%)。老化消除了UC之间和聚合方案之间的差异。
    结论:水泥品牌的选择,而不是类别,和聚合方案影响细胞活力和微生物学行为。光固化有利于减少UCs可能具有的有害牙髓效应。
    OBJECTIVE: To investigate the cytotoxicity on human dental pulp cells (HDPCs) and Streptococcus mutans (S.mutans) biofilm formation on universal resin composite cements (UCs).
    METHODS: Three UCs (RelyX Universal, 3 M Oral Care - RXU; Panavia SA Cement Universal, Kuraray Noritake - PSAU; SoloCem, Coltene - SCM) and one \'gold-standard\' multi-step cement (Panavia V5, Kuraray Noritake - PV5) were used following two polymerization protocols (light-cured - LC; self-cured - SC). Cytotoxicity (MTT) tests were performed after 1, 3 and 7 days of direct contact. Carboxy-2\',7\'-dichlorodihydrofluorescein diacetate was used to detect the release of reactive oxygen species (ROS), and interleukin 6 (IL-6) expression was analyzed by IL-6 proquantum high sensitivity immunoassay. S. mutans biofilms were grown on UCs samples in a bioreactor for 24 h, then adherent viable biomass was assessed using MTT assay. For microbiological procedures, half of UCs samples underwent accelerated aging. Data were statistically analyzed (α = 0.05).
    RESULTS: The highest cytotoxicity was observed for PSAU SC, RXU SC, and PV5 SC at day 1, then for SC RXU after 3 days, and SC PSAU, LC PV5 and SCM after 1-week (p < 0.05). There was no increase in IL-6 expression after 1 day, while it increased depending on the group at 3 and 7 days. The highest ROS expression after 12 h was recorded for PSAU SC, PV5 SC and PV5 LC. Biofilm formation was as follows: RXU > > PSAU = PV5 > SCM, while light-curing systematically decreased biofilm formation (≈-33 %). Aging leveled out differences between UCs and between polymerization protocols.
    CONCLUSIONS: The choice of cement brand, rather than category, and polymerization protocol influence cell viability and microbiological behavior. Light-curing is beneficial for reducing the harmful pulpal effect that UCs may possess.
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  • 文章类型: Journal Article
    由新型冠状病毒SARS-CoV-2引起的COVID-19对全球健康构成了重大挑战,安全,和经济。疫苗接种被认为是预防病毒传播的关键措施。家蚕生物反应器在抗原呈递中得到了广泛的应用,单克隆抗体制备,和亚单位疫苗的开发,由于其安全性,效率,便利性,和成本效益。在这项研究中,我们利用家蚕BmN细胞和家蚕MultiBac多基因共表达系统成功生产了两种原型疫苗:共展示SARS-CoV-2病毒衣壳蛋白的重组杆状病毒载体疫苗(NPV)和衣壳蛋白病毒样颗粒(VLP)疫苗。这些疫苗纯化后,我们免疫BALB/c小鼠以评估其免疫原性。我们的结果表明,VLP和NPV原型疫苗均有效地在小鼠中引起强烈的免疫应答。然而,当两组之间的接种剂量相等时,与VLP组相比,重组NPV疫苗表现出显著更高的血清抗体滴度和脾细胞因子和淋巴细胞免疫调节因子表达增加.这些结果表明重组NPV疫苗的免疫效力增加。相反,VLP原型疫苗对淋巴细胞分化诱导显示出更明显的效果。本研究成功构建了两种不同的形态学重组疫苗模型,并系统阐明了它们在体液免疫应答和淋巴细胞分化率方面的差异。此外,它充分利用了家蚕生物反应器用于疫苗研发的巨大潜力,为研究突变病毒如冠状病毒提供有价值的技术见解。
    COVID-19, caused by the novel coronavirus SARS-CoV-2, has presented a significant challenge to global health, security, and the economy. Vaccination is considered a crucial measure in preventing virus transmission. The silkworm bioreactor has gained widespread usage in antigen presentation, monoclonal antibody preparation, and subunit vaccine development due to its safety, efficiency, convenience, and cost-effectiveness. In this study, we employed silkworm BmN cells and the silkworm MultiBac multigene co-expression system to successfully produce two prototype vaccines: a recombinant baculovirus vector vaccine (NPV) co-displaying the SARS-CoV-2 virus capsid protein and a capsid protein virus-like particle (VLP) vaccine. Following the purification of these vaccines, we immunized BALB/c mice to evaluate their immunogenicity. Our results demonstrated that both VLP and NPV prototype vaccines effectively elicited robust immune responses in mice. However, when equal inoculation doses between groups were compared, the recombinant NPV vaccine exhibited significantly higher serum antibody titers and increased expression of spleen cytokines and lymphocyte immune regulatory factors compared to the VLP group. These results suggested an increased immune efficacy of the recombinant NPV vaccine. Conversely, the VLP prototype vaccine displayed more pronounced effects on lymphocyte cell differentiation induction. This study successfully constructed two distinct morphological recombinant vaccine models and systematically elucidated their differences in humoral immune response and lymphocyte differentiation rate. Furthermore, it has fully harnessed the immense potential of silkworm bioreactors for vaccine research and development, providing valuable technical insights for studying mutated viruses like coronaviruses.
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  • 文章类型: Journal Article
    背景:里氏木霉以其产生大量细胞外蛋白质的能力而闻名,并且是最重要的工业用途丝状真菌之一。木聚糖酶调节剂1(XYR1)是在诱导条件下负责活化纤维素酶和半纤维素酶基因表达的主调节剂。据报道,在xyr1的某些区域具有点突变的菌株绕过了诱导碳源的需要,允许高(半)纤维素酶的生产,即使在葡萄糖的存在。这些突变也改变了产生的蛋白质的概况,将其更多地转向木聚糖酶生产,并在诱导条件下增加整体蛋白质产量。然而,这些突变是如何改变代谢和其他细胞过程导致这些变化的,目前尚不清楚。
    结果:在这项研究中,我们旨在探讨xyr1点突变在转录组和代谢水平上引起的变化,以更好地了解抑制葡萄糖和诱导乳糖条件下蛋白质产量增加的原因。不出所料,在两种条件下,xyr1突变体中许多碳水化合物活性酶(CAZy)基因的表达均增加。然而,在诱导条件下,它们的诱导更高。与野生型xyr1菌株相比,xyr1突变菌株在乳糖上生长期间构建更多的生物质并产生更多的细胞外蛋白。参与氧化还原D-半乳糖分解代谢途径的基因在xyr1突变株中上调,可能有助于更有效地利用乳糖。除了CAZy基因,聚类和富集分析显示,在xyr1突变体中基因表达较高的簇中,线粒体相关基因本体论术语的过度表达,表明线粒体在与xyr1突变相关的代谢状态改变中起作用。代谢组学显示,在所有测量的时间点,xyr1突变株中游离酪氨酸更丰富,而葡萄糖突变株中的多种脂肪酸含量较低。
    结论:结果有助于更深入地了解在诱导和抑制碳源下生长的里氏木霉生理,并对主调节因子XYR1的功能提供了新的见解。产生的大量数据可作为改善蛋白质生产的新靶标的来源。
    BACKGROUND: Trichoderma reesei is known for its ability to produce large amounts of extracellular proteins and is one of the most important industrially used filamentous fungus. Xylanase regulator 1 (XYR1) is the master regulator responsible for the activation of cellulase and hemicellulase gene expression under inducing conditions. It has been reported that strains with point mutations in certain areas of xyr1 bypass the need for inducing carbon source, allowing high (hemi)cellulase production even in the presence of glucose. These mutations also change the profile of produced proteins, shifting it more towards xylanase production, and increase the overall protein production in inducing conditions. However, how these mutations alter the metabolism and other cellular processes to cause these changes remains unclear.
    RESULTS: In this study, we aimed to explore changes caused by a point mutation in xyr1 on transcriptomic and metabolic level to better understand the reasons behind the increased protein production in both repressing glucose and inducing lactose conditions. As expected, the expression of many carbohydrate-active enzyme (CAZy) genes was increased in the xyr1 mutant in both conditions. However, their induction was higher under inducing conditions. The xyr1 mutant strain built more biomass and produced more extracellular proteins during growth on lactose compared to the wild type xyr1 strain. Genes involved in oxidoreductive D-galactose catabolism pathway were upregulated in the xyr1 mutant strain, potentially contributing to the more efficient utilization of lactose. In addition to CAZy genes, clustering and enrichment analysis showed over-representation of mitochondria-related Gene Ontology terms in clusters where gene expression was higher in the xyr1 mutant, indicating that mitochondria play a role in the altered metabolic state associated with the xyr1 mutation. Metabolomics revealed that free tyrosine was more abundant in the xyr1 mutant strain in all measured timepoints, whereas multiple fatty acids were less abundant in the mutant strain on glucose.
    CONCLUSIONS: The results contribute to more in-depth knowledge on T. reesei physiology growing under inducing and repressing carbon sources and gives new insights on the function of the master regulator XYR1. The vast data generated serve as a source for new targets for improved protein production.
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