binding affinity.

结合亲和力。
  • 文章类型: Journal Article
    背景:非小细胞肺癌(NSCLC)患者通常受益于吉非替尼等EGFR抑制剂。然而,耐药性仍然是治疗中的重大挑战。1,2,3-三唑的独特性质,基于氮的化合物,由于其多功能的结构属性和多样化的生物效应,有望成为潜在的解决方案,包括抗癌特性。
    方法:我们的合成过程涉及Huisgen环加成化学法,产生了不同的埃克替尼衍生物。我们评估了这些衍生物对各种癌细胞系的抗癌能力,特别关注表现出耐药性的NSCLC细胞。此外,我们研究了所选化合物的结合亲和力,包括3L,使用表面等离子体共振(SPR)实验对野生型EGFR。
    结果:值得注意的是,埃克替尼衍生物如衍生物3l证明了对不同癌细胞系的显著功效,包括那些对常规疗法有抵抗力的。化合物3l对耐药细胞表现出有效的活性,IC50值低于10μM。SPR实验显示,与埃克替尼相比,3l对野生型EGFR表现出增强的亲和力。我们的研究结果表明,3l充当EGFR的蛋白酪氨酸激酶(EGFR-PTK)的引人注目的拮抗剂。
    结论:埃克替尼衍生物3l,有一个1,2,3-三唑环,证明了对耐药NSCLC细胞的有效抗癌作用。其增强的对EGFR的结合亲和力和EGFR-RAS-RAF-MAPK通路位置3l的调节作为抗癌药物未来发展的有希望的候选物。
    BACKGROUND: Non-small cell lung cancer (NSCLC) patients often benefit from EGFR inhibitors like gefitinib. However, drug resistance remains a significant challenge in treatment. The unique properties of 1,2,3-triazole, a nitrogen-based compound, hold promise as potential solutions due to its versatile structural attributes and diverse biological effects, including anticancer properties.
    METHODS: Our synthesis process involved the huisgen cycloaddition chemical method, which generated diverse icotinib derivatives. We evaluated the anticancer capabilities of these derivatives against various cancer cell lines, with a specific focus on NSCLC cells that exhibit drug resistance. Additionally, we investigated the binding affinity of selected compounds, including 3l, towards wild-type EGFR using surface plasmon resonance (SPR) experiments.
    RESULTS: Notably, icotinib derivatives such as derivative 3l demonstrated significant efficacy against different cancer cell lines, including those resistant to conventional therapies. Compound 3l exhibited potent activity with IC50 values below 10 μM against drug-resistant cells. SPR experiments revealed that 3l exhibited enhanced affinity towards wild-type EGFR compared to icotinib. Our research findings suggest that 3l acts as a compelling antagonist for the protein tyrosine kinase of EGFR (EGFR-PTK).
    CONCLUSIONS: Icotinib derivative 3l, featuring a 1,2,3-triazole ring, demonstrates potent anticancer effects against drug-resistant NSCLC cells. Its enhanced binding affinity to EGFR and modulation of the EGFR-RAS-RAF-MAPK pathway position 3l as a promising candidate for the future development of anticancer drugs.
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  • 文章类型: Journal Article
    背景:对兴奋性神经递质作出反应的受体的过度激活可导致各种有害结果,例如无法正确调节钙水平,自由基的产生,线粒体通透性转变的启动,以及随后由兴奋性毒性引起的二次损伤。茶的一种非蛋白质氨基酸,L-茶氨酸,在结构上与谷氨酸有关,大脑中主要的刺激性神经递质。以前的报道强调了其与谷氨酸受体结合的能力。
    目的:深入了解离子型谷氨酸受体与L-茶氨酸之间的结合相容性是必不可少的。
    方法:在这项分子对接研究中,已经评估了L-茶氨酸的拮抗作用及其在GluR5红藻氨酸受体抑制中可能的治疗益处,并与熟悉的AMPA和红藻氨酸受体拮抗剂进行了比较,氰基喹喔啉(CNQX)和二硝基喹喔啉(DNQX),使用Molegro虚拟Docker7.0.0。
    结果:发现L-茶氨酸与GluR5受体结合的能力高于谷氨酸,尽管它不能超过竞争性拮抗剂CNQX和DNQX的高结合趋势。尽管如此,L-茶氨酸的药物相似度评分和血脑屏障穿越电位均高于CNQX和DNQX。
    结论:该研究为L-茶氨酸的优势提供了一个推论,这可能是一种安全有效的替代自然疗法,用于挽救由于兴奋性毒性而导致的神经元死亡。
    BACKGROUND: Overactivation of receptors that respond to excitatory neurotransmitters can result in various harmful outcomes, such as the inability to properly modulate calcium levels, generation of free radicals, initiation of the mitochondrial permeability transition, and subsequent secondary damage caused by excitotoxicity. A non-proteinogenic amino acid of tea, L-theanine, is structurally related to glutamate, the major stimulatory neurotransmitter in the brain. Previous reports have emphasised its ability to bind with glutamate receptors.
    OBJECTIVE: An in-depth understanding of the binding compatibility between ionotropic glutamate receptors and L-theanine is a compelling necessity.
    METHODS: In this molecular docking study, the antagonistic effect of L-theanine and its possible therapeutic benefit in GluR5 kainate receptor inhibition has been evaluated and compared to the familiar AMPA and kainite receptor antagonists, cyanoquinoxaline (CNQX) and dinitroquinoxaline (DNQX), using Molegro Virtual Docker 7.0.0.
    RESULTS: The capacity of L-theanine to cohere with the GluR5 receptor was revealed to be higher than that of glutamate, although it could not surpass the high binding tendency of competitive antagonists CNQX and DNQX. Nonetheless, the drug-likeness score and the blood-brain barrier traversing potential of L-theanine were higher than CNQX and DNQX.
    CONCLUSIONS: The study provides an inference to the advantage of L-theanine, which can be a safe and effective alternative natural therapy for rescuing neuronal death due to excitotoxicity.
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  • 文章类型: Journal Article
    背景:烟酰胺N-甲基转移酶(NNMT)以S-腺苷-L-甲硫氨酸(SAM)作为甲基供体催化烟酰胺的N-甲基化。NNMT的异常表达与许多疾病(如多种癌症和代谢和肝脏疾病)有关,使NNMT成为潜在的治疗靶点。有关酶-底物/抑制剂相互作用的有限研究可以充分了解详细的反应机理。
    方法:使用饱和转移差异(STD)核磁共振(NMR)技术结合定点诱变来测定烟酰胺或SAH结合NNMT及其突变体的结合亲和力和配体结合表位。
    结果:WTNNMT与烟酰胺和S-腺苷同型半胱氨酸(SAH)的平均解离常数为5.5±0.9mM和1.2±0.3mM,分别,而烟酰胺突变体Y20F和Y20G分别是WT的近4倍和20倍,SAH分别是WT的近2倍和5倍。数据表明,WT对烟酰胺或SAH具有最高的结合亲和力,其次是Y20F和Y20G,这与其催化活性是一致的。
    结论:本研究通过STDNMR获得了烟酰胺和SAH与NNMT及其突变体的结合亲和力。发现烟酰胺和SAH以特定的方向与WT结合,Y20对它们的结合方向和对NNMT的亲和力至关重要。
    BACKGROUND: Nicotinamide N-methyltransferase (NNMT) catalyzes the N-methylation of nicotinamide with S-adenosine-L-methionine (SAM) as the methyl donor. Abnormal expression of NNMT is associated with many diseases (such as multiple cancers and metabolic and liver diseases), making NNMT a potential therapeutic target. Limited studies concerning the enzymesubstrate/ inhibitor interactions could be found to fully understand the detailed reaction mechanism.
    METHODS: The binding affinity and ligand binding epitopes of nicotinamide or SAH for binding NNMT and its mutants were determined using saturated transfer difference (STD) nuclear magnetic resonance (NMR) techniques combined with site-directed mutagenesis.
    RESULTS: The average dissociation constant of WT NNMT with nicotinamide and S-adenosine homocysteine (SAH) was 5.5 ± 0.9 mM and 1.2 ± 0.3 mM, respectively, while the mutants Y20F and Y20G with nicotinamide were up to nearly 4 times and 20 times that of WT and with SAH nearly 2 times and 5 times that of WT. The data suggested that WT had the highest binding affinity for nicotinamide or SAH, followed by Y20F and Y20G, which was consistent with its catalytic activity.
    CONCLUSIONS: The binding affinity of nicotinamide and SAH to NNMT and its mutants were obtained by STD NMR in this study. It was found that nicotinamide and SAH bind to WT in a particular orientation, and Y20 is critical for their binding orientation and affinity to NNMT.
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  • 文章类型: Journal Article
    靶向αvβ3整合素的替代线性肽的开发备受关注,作为传统的肽配体,循环RGD,受到水溶性差和复杂合成的限制。利用基于药效团的虚拟筛选和高通量分子对接,我们鉴定了两种新的线性小肽RWr和RWrNM,它们对αvβ3整联蛋白具有高亲和力和特异性。与环状RGD(c(RGDyK))的竞争性结合和与整联蛋白表达水平相关的细胞摄取证实了它们对αvβ3整联蛋白的亲和力。分子间相互作用测量和动力学模拟证明了高结合亲和力和稳定性,尤其是RWrNM。体内肽引导的肿瘤成像和靶向治疗进一步证实了它们的特异性。结果表明,新鉴定的小线性肽RWrNM,对αvβ3整合素具有高亲和力和特异性,更好的水溶性,和简化的合成过程,可以克服目前环状RGD肽的局限性,为诊断和治疗的多样化应用铺平了道路。
    Development of alternative linear peptides for targeting αvβ3 integrin has attracted much attention, as the traditional peptide ligand, cyclic RGD, is limited by inferior water-solubility and complex synthesis. Using pharmacophore-based virtual screening and high-throughput molecular docking, we identified two novel linear small peptides RWr and RWrNM with high affinity and specificity to αvβ3 integrin. The competitive binding with cyclic RGD (c(RGDyK)) and cellular uptake related to the integrin expression levels verified their affinity to αvβ3 integrin. The intermolecular interaction measurement and dynamics simulation demonstrated the high binding affinity and stability, especially for RWrNM. In vivo peptide-guided tumor imaging and targeted therapy further confirmed their specificity. Results indicated that the newly identified small linear peptide RWrNM, with high affinity and specificity to αvβ3 integrin, better water-solubility, and simplified synthetic process, could overcome limitations of the current cyclic RGD peptides, paving the way for diverse use in diagnosis and therapy.
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