Protein structure determination has made progress with the aid of deep learning models, enabling the prediction of protein folding from protein sequences. However, obtaining accurate predictions becomes essential in certain cases where the protein structure remains undescribed. This is particularly challenging when dealing with rare, diverse structures and complex sample preparation. Different metrics assess prediction reliability and offer insights into result strength, providing a comprehensive understanding of protein structure by combining different models. In a previous study, two proteins named ARM58 and ARM56 were investigated. These proteins contain four domains of unknown function and are present in Leishmania spp. ARM refers to an antimony resistance marker. The study\'s main objective is to assess the accuracy of the model\'s predictions, thereby providing insights into the complexities and supporting metrics underlying these findings. The analysis also extends to the comparison of predictions obtained from other species and organisms. Notably, one of these proteins shares an ortholog with Trypanosoma cruzi and Trypanosoma brucei, leading further significance to our analysis. This attempt underscored the importance of evaluating the diverse outputs from deep learning models, facilitating comparisons across different organisms and proteins. This becomes particularly pertinent in cases where no previous structural information is available.

BACKGROUND: The COVID-19 pandemic had profound global impacts on daily lives, economic stability, and healthcare systems. Diagnosis of COVID-19 infection via RT-PCR was crucial in reducing spread of disease and informing treatment management. While RT-PCR is a key diagnostic test, there is room for improvement in the development of diagnostic criteria. Identification of volatile organic compounds (VOCs) in exhaled breath provides a fast, reliable, and economically favorable alternative for disease detection.
METHODS: This meta-analysis analyzed the diagnostic performance of VOC-based breath analysis in detection of COVID-19 infection. A systematic review of twenty-nine papers using the grading criteria from Newcastle-Ottawa Scale (NOS) and PRISMA guidelines was conducted.
RESULTS: The cumulative results showed a sensitivity of 0.92 (95 % CI, 90 %-95 %) and a specificity of 0.90 (95 % CI 87 %-93 %). Subgroup analysis by variant demonstrated strong sensitivity to the original strain compared to the Omicron and Delta variant in detection of SARS-CoV-2 infection. An additional subgroup analysis of detection methods showed eNose technology had the highest sensitivity when compared to GC-MS, GC-IMS, and high sensitivity-MS.
CONCLUSIONS: Overall, these results support the use of breath analysis as a new detection method of COVID-19 infection.

With the release of ChatGPT at the end of 2022, a new era of thinking and technology use has begun. Artificial intelligence models (AIs) like Gemini (Bard), Copilot (Bing), and ChatGPT-3.5 have the potential to impact every aspect of our lives, including laboratory data interpretation. To assess the accuracy of ChatGPT-3.5, Copilot, and Gemini responses in evaluating biochemical data. Ten simulated patients\' biochemical laboratory data, including serum urea, creatinine, glucose, cholesterol, triglycerides, low-density lipoprotein (LDL-c), and high-density lipoprotein (HDL-c), in addition to HbA1c, were interpreted by three AIs: Copilot, Gemini, and ChatGPT-3.5, followed by evaluation with three raters. The study was carried out using two approaches. The first encompassed all biochemical data. The second contained only kidney function data. The first approach indicated Copilot to have the highest level of accuracy, followed by Gemini and ChatGPT-3.5. Friedman and Dunn\'s post-hoc test revealed that Copilot had the highest mean rank; the pairwise comparisons revealed significant differences for Copilot vs. ChatGPT-3.5 (P = 0.002) and Gemini (P = 0.008). The second approach exhibited Copilot to have the highest accuracy of performance. The Friedman test with Dunn\'s post-hoc analysis showed Copilot to have the highest mean rank. The Wilcoxon Signed-Rank Test demonstrated an indistinguishable response (P = 0.5) of Copilot when all laboratory data were applied vs. the application of only kidney function data. Copilot is more accurate in interpreting biochemical data than Gemini and ChatGPT-3.5. Its consistent responses across different data subsets highlight its reliability in this context.

Recently, membrane separation technology has been widely utilized in filtration process intensification due to its efficient performance and unique advantages, but membrane fouling limits its development and application. Therefore, the research on membrane fouling prediction and control technology is crucial to effectively reduce membrane fouling and improve separation performance. This review first introduces the main factors (operating condition, material characteristics, and membrane structure properties) and the corresponding principles that affect membrane fouling. In addition, mathematical models (Hermia model and Tandem resistance model), artificial intelligence (AI) models (Artificial neural networks model and fuzzy control model), and AI optimization methods (genetic algorithm and particle swarm algorithm), which are widely used for the prediction of membrane fouling, are summarized and analyzed for comparison. The AI models are usually significantly better than the mathematical models in terms of prediction accuracy and applicability of membrane fouling and can monitor membrane fouling in real-time by working in concert with image processing technology, which is crucial for membrane fouling prediction and mechanism studies. Meanwhile, AI models for membrane fouling prediction in the separation process have shown good potential and are expected to be further applied in large-scale industrial applications for separation and filtration process intensification. This review will help researchers understand the challenges and future research directions in membrane fouling prediction, which is expected to provide an effective method to reduce or even solve the bottleneck problem of membrane fouling, and to promote the further application of AI modeling in environmental and food fields.

An analysis of the optical response of a GaN-based metalens was conducted alongside the utilization of two sequential artificial intelligence (AI) models in addressing the occasional issues of blurriness and color cast in captured images. The optical loss of the metalens in the blue spectral range was found to have resulted in the color cast of images. Autoencoder and CodeFormer sequential models were employed in order to correct the color cast and reconstruct image details, respectively. Said sequential models successfully addressed the color cast and reconstructed details for all of the allocated face image categories. Subsequently, the CIE 1931 chromaticity diagrams and peak signal-to-noise ratio analysis provided numerical evidence of the AI models\' effectiveness in image reconstruction. Furthermore, the AI models can still repair the image without blue information. Overall, the integration of metalens and artificial intelligence models marks a breakthrough in enhancing the performance of full-color metalens-based imaging systems.

Large language models (LLMs) will benefit science by accelerating task performance. We explored whether answers generated by ChatGPT (generative pretrained transformer) to questions of biology are sufficiently diverse. \'Plant awareness\' in ChatGPT answers was found to be highly variable, illustrating the importance of scientists being involved in validating the data and methods used to train artificial intelligence (AI) models.

While some robust artificial intelligence (AI) techniques such as Gene-Expression Programming (GEP), Model Tree (MT), and Multivariate Adaptive Regression Spline (MARS) have been frequently employed in the field of water resources, documents aimed to explore their uncertainty levels are few and far between. Meanwhile, uncertainty determination of these AI models in practical applications is highly important especially when we aimed to use the AI models for streamflow forecast due to the repercussions of poorly managed water resources. With the aid of a global daily streamflow dataset, understanding the uncertainty of GEP, MT, and MARS for forecasting streamflow of natural rivers was studied. The efficiency of uncertainty analysis was quantified by two statistical indicators: 95% Percent Prediction Uncertainty (95%PPU) and R-factor. The results demonstrated that MT had lower uncertainty (95%PPU=0.59 and R-factor=1.67) in comparison with MARS (95%PPU=0.61 and R-factor=1.92) and GEP (95%PPU=0.64 and R-factor=2.03). Overall, although the confidence interval bands of uncertainty for the AI models almost captured the mean streamflow measurements, wide bands of uncertainty were obtained and consequently remarkable uncertainty in the calculation of monthly streamflow values was met.

Biosurfactants are molecules with wide application in several industrial processes. Their production is damaged due to inefficient bioprocessing and expensive substrates. The latest developments of strategies to improve and economize the biosurfactant production process use alternative substrates, optimization techniques, and different scales. This paper presents a study to compare the performances of classical (polynomial models) and modern tools, such as artificial intelligence to aid optimization of the alternative substrate concentration (alternative based on beet peel and glycerol) and process parameters (agitation and aeration). The evaluation was developed in two different scales: Erlenmeyer flask (100 mL) and bioreactor (7 L). The intelligent models were implemented to verify the ability to predict the emulsification index and biosurfactant concentration in smaller scale and the biosurfactant concentration and the superficial tension reduction (STR) in bigger scale, resulting in four different situations. The overall results of the predictions led to artificial neural networks as the best performing modeling tool in all four situations studied, with R2 values ranging from 0.9609 to 0.9974 and error indices close to 0. Also, four different models (Wu, Contois, Megee, and Ghose-Tyagi) were adjusted by particle swarm optimization (PSO) in order to describe the kinetics of biosurfactant production. Contois model was the only one to present R2 ≥ 0.97 for all monitored variables. The findings described in this work present an adjusted model for the prediction of biosurfactant production and also state that the most adjusted kinetic model for further studies on this process is Contois model, leading to the conclusion that biomass growth is limited by a single substrate, considering only glucose.

Fibronectin (FN) plays an essential role in the host\'s response to infection. In previous studies, a significant decrease in the FN level was observed in sepsis; however, it has not been clearly elucidated how this parameter affects the patient\'s survival. To better understand the relationship between FN and survival, we utilized innovative approaches from the field of explainable machine learning, including local explanations (Break Down, Shapley Additive Values, Ceteris Paribus), to understand the contribution of FN to predicting individual patient survival. The methodology provides new opportunities to personalize informative predictions for patients. The results showed that the most important indicators for predicting survival in sepsis were INR, FN, age, and the APACHE II score. ROC curve analysis showed that the model\'s successful classification rate was 0.92, its sensitivity was 0.92, its positive predictive value was 0.76, and its accuracy was 0.79. To illustrate these possibilities, we have developed and shared a web-based risk calculator for exploring individual patient risk. The web application can be continuously updated with new data in order to further improve the model.

OBJECTIVE: The need for predictive and prognostic biomarkers in colorectal carcinoma (CRC) brought us to an era where the use of artificial intelligence (AI) models is increasing. We investigated the expression of Claudin-7, a tight junction component, which plays a crucial role in maintaining the integrity of normal epithelial mucosa, and its potential prognostic role in advanced CRCs, by drawing a parallel between statistical and AI algorithms.
METHODS: Claudin-7 immunohistochemical expression was evaluated in the tumor core and invasion front of CRCs from 84 patients and correlated with clinicopathological parameters and survival. The results were compared with those obtained by using various AI algorithms.
RESULTS: the Kaplan-Meier univariate survival analysis showed a significant correlation between survival and Claudin-7 intensity in the invasive front (p = 0.00), a higher expression being associated with a worse prognosis, while Claudin-7 intensity in the tumor core had no impact on survival. In contrast, AI models could not predict the same outcome on survival.
CONCLUSIONS: The study showed through statistical means that the immunohistochemical overexpression of Claudin-7 in the tumor invasive front may represent a poor prognostic factor in advanced stages of CRCs, contrary to AI models which could not predict the same outcome, probably because of the small number of patients included in our cohort.