越来越多的微生物组知识导致了农业食品系统的重大进步。基于微生物组应用的案例研究已经在全球范围内得到报道,在这次审查中,我们选择了14个成功案例,展示了微生物组研究在推进农业食品系统中的重要性。选定的案例研究描述了产品,方法论,应用程序,工具,以及产生经济和社会影响的过程。此外,它们涵盖农业食物链中的广泛领域:疾病和假定的病原体的管理;使用微生物作为土壤肥料和植物增强剂;调查食品发酵过程中发生的微生物动力学;与动物和人类健康危害相关的微生物和/或基因的存在(例如,霉菌毒素,腐败剂,或病原体)在饲料中,食物,及其加工环境;改善HACCP系统的应用;以及新型益生菌和益生元的鉴定,以改善动物肠道微生物组或预防人类慢性非传染性疾病(例如,肥胖并发症)。土壤的微生物群,植物,和动物对于确保人类和环境健康至关重要,这篇综述强调了微生物组应用在这方面的影响。
Increasing knowledge of the microbiome has led to significant advancements in the agrifood system. Case studies based on microbiome applications have been reported worldwide and, in this review, we have selected 14 success stories that showcase the importance of microbiome research in advancing the agrifood system. The selected case studies describe products, methodologies, applications, tools, and processes that created an economic and societal impact. Additionally, they cover a broad range of fields within the agrifood chain: the management of diseases and putative pathogens; the use of microorganism as soil fertilizers and plant strengtheners; the investigation of the microbial dynamics occurring during food fermentation; the presence of microorganisms and/or genes associated with hazards for animal and human health (e.g., mycotoxins, spoilage agents, or pathogens) in feeds, foods, and their processing environments; applications to improve HACCP systems; and the identification of novel probiotics and prebiotics to improve the animal gut microbiome or to prevent chronic non-communicable diseases in humans (e.g., obesity complications). The microbiomes of soil, plants, and animals are pivotal for ensuring human and environmental health and this review highlights the impact that microbiome applications have with this regard.