actin-binding

肌动蛋白结合
  • 文章类型: Journal Article
    杜氏肌营养不良是一种致命的肌肉疾病,由编码肌营养不良蛋白的基因突变引起的,肌动蛋白结合细胞骨架蛋白。缺乏功能性肌营养不良蛋白会导致肌肉无力和变性,最终导致心脏和呼吸衰竭。通过基因疗法取代缺失的肌营养不良蛋白的策略已被大力追求。然而,肌营养不良蛋白基因对于目前的基因治疗方法来说太大了。目前可用的微肌营养不良蛋白构建体缺乏肌动蛋白结合结构域2,并且与全长肌营养不良蛋白相比在体外显示降低的肌动蛋白结合亲和力。因此,增加微肌营养不良蛋白的肌动蛋白结合亲和力,使用小分子,可能是一种有益的治疗方法。这里,我们开发并验证了一种新的高通量筛选(HTS)试验,以发现能增加肌养蛋白肌动蛋白结合域1(ABD1)结合亲和力的小分子.我们设计了一种新型FRET生物传感器,由mClover3,连接到肌营养不良蛋白ABD1的C末端的荧光蛋白(供体)和连接到肌动蛋白的C末端半胱氨酸的AlexaFluor568(受体)组成。我们在小分子筛选中使用了这种生物传感器,使用独特的高精度,HTS荧光寿命测定,从FDA批准的文库中鉴定出几种显著增加肌动蛋白和ABD1之间结合的化合物。该HTS测定为发现肌动蛋白-肌营养不良蛋白相互作用的小分子调节剂建立了可行性,最终目标是开发肌肉萎缩症的治疗方法。
    Duchenne muscular dystrophy is a lethal muscle disease, caused by mutations in the gene encoding dystrophin, an actin-binding cytoskeletal protein. Absence of functional dystrophin results in muscle weakness and degeneration, eventually leading to cardiac and respiratory failure. Strategies to replace the missing dystrophin via gene therapy have been intensively pursued. However, the dystrophin gene is too large for current gene therapy approaches. Currently available micro-dystrophin constructs lack the actin-binding domain 2 and show decreased actin-binding affinity in vitro compared to full-length dystrophin. Thus, increasing the actin-binding affinity of micro-dystrophin, using small molecules, could be a beneficial therapeutic approach. Here, we have developed and validated a novel high-throughput screening (HTS) assay to discover small molecules that increase the binding affinity of dystrophin\'s actin-binding domain 1 (ABD1). We engineered a novel FRET biosensor, consisting of the mClover3, fluorescent protein (donor) attached to the C-terminus of dystrophin ABD1, and Alexa Fluor 568 (acceptor) attached to the C-terminal cysteine of actin. We used this biosensor in small-molecule screening, using a unique high-precision, HTS fluorescence lifetime assay, identifying several compounds from an FDA-approved library that significantly increase the binding between actin and ABD1. This HTS assay establishes feasibility for the discovery of small-molecule modulators of the actin-dystrophin interaction, with the ultimate goal of developing therapies for muscular dystrophy.
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  • 文章类型: Journal Article
    平滑肌细胞(SMC)的分化取决于血清反应因子(SRF)及其共激活剂心肌素(MYOCD)。MYOCD在SMC基因转录程序中的作用已得到充分确立。相比之下,MYOCD在控制SMC特异性替代外显子使用中的作用,包括外显子剪接,没有被探索过。在目前的工作中,我们确定了四个剪接因子(MBNL1,RBPMS,RBPMS2和RBFOX2)与人SMC组织中的MYOCD相关。MYOCD家族成员在人冠状动脉SMCs中的强制表达在体外上调这些剪接因子的表达。对于转录本多样性的全球分析,我们在MYOCD转导后进行了RNA测序。我们用三种不同的方法分析了替代转录本。基于外显子的分析确定了1637个具有差异外显子使用的特征。例如,MYLK中编码telokin的3'外显子的使用相对于5'外显子增加,17kDatelokin与130kDaMYLK蛋白的比例也是如此。基于专用事件的分析确定了239个MYOCD驱动的剪接事件。涉及MBNL1、MCAM、ACTN1是最突出的,这通过变异特异性PCR分析得到证实。为了支持RBPMS和RBFOX2在MYOCD驱动的剪接中的作用,我们发现了它们在差异剪接的外显子周围的结合基序的富集。此外,MYOCD刺激的RBPMS或RBFOX2拮抗剪接事件的敲减,包括那些涉及ACTN1,VCL,MBNL1。支持MYOCD-SRF驱动剪接的体内作用,我们证明了在诱导型和SMC特异性Srf敲除小鼠中Rbpms表达和剪接的改变。我们得出的结论是MYOCD-SRF,部分通过RBPMS和RBFOX2诱导不同外显子使用和选择性剪接的程序,作为更广泛的SMC分化程序的一部分。
    Differentiation of smooth muscle cells (SMCs) depends on serum response factor (SRF) and its co-activator myocardin (MYOCD). The role of MYOCD for the SMC program of gene transcription is well established. In contrast, the role of MYOCD in control of SMC-specific alternative exon usage, including exon splicing, has not been explored. In the current work we identified four splicing factors (MBNL1, RBPMS, RBPMS2, and RBFOX2) that correlate with MYOCD across human SMC tissues. Forced expression of MYOCD family members in human coronary artery SMCs in vitro upregulated expression of these splicing factors. For global profiling of transcript diversity, we performed RNA-sequencing after MYOCD transduction. We analyzed alternative transcripts with three different methods. Exon-based analysis identified 1637 features with differential exon usage. For example, usage of 3´ exons in MYLK that encode telokin increased relative to 5´ exons, as did the 17 kDa telokin to 130 kDa MYLK protein ratio. Dedicated event-based analysis identified 239 MYOCD-driven splicing events. Events involving MBNL1, MCAM, and ACTN1 were among the most prominent, and this was confirmed using variant-specific PCR analyses. In support of a role for RBPMS and RBFOX2 in MYOCD-driven splicing we found enrichment of their binding motifs around differentially spliced exons. Moreover, knockdown of either RBPMS or RBFOX2 antagonized splicing events stimulated by MYOCD, including those involving ACTN1, VCL, and MBNL1. Supporting an in vivo role of MYOCD-SRF-driven splicing, we demonstrate altered Rbpms expression and splicing in inducible and SMC-specific Srf knockout mice. We conclude that MYOCD-SRF, in part via RBPMS and RBFOX2, induce a program of differential exon usage and alternative splicing as part of the broader program of SMC differentiation.
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  • 文章类型: Journal Article
    Fascin,一种主要的肌动蛋白交联蛋白,在大多数脊椎动物上皮组织中表达。它将肌动蛋白丝组织成有序的束,这些束负责动态膜突起的延伸,包括微尖峰,filopodia,和从细胞表面侵入足印,它们参与细胞迁移和侵袭,是癌症转移的关键组成部分。然而,尚不清楚fascin-1如何诱导肌动蛋白结合/成束,以及fascin-1沿肌动蛋白丝定位的位置,从而促进肌动蛋白束的形成。在本研究中,我们试图通过使用各种fascin-1构建体的生化和电子显微镜分析来阐明这些问题。通过电子显微镜(EM),迭代螺旋实空间重建(IHRSR)和断层扫描获得了肌动蛋白/fascin-1复合物的三维结构。我们发现,包含fascin-1的肌动蛋白结合位点2(ABS2)的N末端区域负责肌动蛋白捆扎,而C末端区域对于fascin-1的二聚化很重要。我们还发现,通过C末端区域的分子间相互作用使fascin-1二聚化对于肌动蛋白捆扎至关重要。由于fascin是癌症发展的重要因素,预计本研究的结果将为癌症治疗策略的制定提供有用的信息.
    Fascin, a major actin cross-linking protein, is expressed in most vertebrate epithelial tissues. It organizes actin filaments into well-ordered bundles that are responsible for the extension of dynamic membrane protrusions, including microspikes, filopodia, and invadopodia from cell surfaces, which are involved in cell migration and invasion as critical components of cancer metastasis. However, it is not well-understood how fascin-1 induces actin binding/bundling and where fascin-1 localizes along the actin filaments, thus facilitating actin bundle formation. In the present study, we attempted to clarify these problems by using biochemical and electron microscopic analyses using various fascin-1 constructs. Three dimensional structures of actin/fascin-1 complex were obtained by electron microscopy (EM) with iterative helical real-space reconstruction (IHRSR) and tomography. We revealed that the N-terminal region containing the Actin-Binding Site 2 (ABS2) of fascin-1 is responsible for actin bundling and the C-terminal region is important for the dimerization of fascin-1. We also found that the dimerization of fascin-1 through intermolecular interactions of the C-terminal region is essential for actin bundling. Since fascin is an important factor in cancer development, it is expected that the findings of present study will provide useful information for development of therapeutic strategies for cancer.
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  • 文章类型: Journal Article
    LIM和SH3结构域蛋白(lasp)家族,星云超家族中最小的蛋白质,由在各种非肌肉组织中表达的脊椎动物搭扣-1组成,脊椎动物lasp-2在大脑和心肌中表达,和无脊椎动物扣,其功能已在Ascidiacea和Insecta中进行了分析。通过多次比对研究了lasp家族蛋白的基因进化,基因结构比较,和真核生物中mRNA表达得到证实的同系性分析。在这项研究中分析的所有无脊椎动物都属于Filasterea进化枝,除了Placozoa,至少有一个搭扣基因.发现在脊椎动物lasp-2中检测到的最小肌动蛋白结合区(LIM结构域和第一个星云蛋白重复序列)和SH3结构域在lasp家族蛋白中保守,我们证明线虫刺骨具有肌动蛋白结合活性。接头序列在无脊椎动物搭扣蛋白中有所不同,这意味着lasp家族蛋白具有普遍性和多样性的功能。基因结构和合成分析表明,在Filasterea或Holozoa中出现了编码两个星状蛋白重复序列和一个接头的基因片段,第一个lasp基因是在三个编码LIM结构域的基因片段组合后产生的,两个带有接头的星云重复,和SH3域。
    The LIM and SH3 domain protein (lasp) family, the smallest proteins in the nebulin superfamily, consists of vertebrate lasp-1 expressed in various non-muscle tissues, vertebrate lasp-2 expressed in the brain and cardiac muscle, and invertebrate lasp whose functions have been analyzed in Ascidiacea and Insecta. Gene evolution of the lasp family proteins was investigated by multiple alignments, comparison of gene structure, and synteny analyses in eukaryotes in which mRNA expression was confirmed. All invertebrates analyzed in this study belonging to the clade Filasterea, with the exception of Placozoa, have at least one lasp gene. The minimal actin-binding region (LIM domain and first nebulin repeat) and SH3 domain detected in vertebrate lasp-2 were found to be conserved among the lasp family proteins, and we showed that nematode lasp has actin-binding activity. The linker sequences vary among invertebrate lasp proteins, implying that the lasp family proteins have universal and diverse functions. Gene structures and syntenic analyses suggest that a gene fragment encoding two nebulin repeats and a linker emerged in Filasterea or Holozoa, and the first lasp gene was generated following combination of three gene fragments encoding the LIM domain, two nebulin repeats with a linker, and the SH3 domain.
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  • 文章类型: Journal Article
    肌球蛋白轻链激酶(MLCK)是一种Ca2-钙调蛋白依赖性酶,致力于磷酸化和激活肌球蛋白II以为各种运动过程提供力。在平滑肌细胞和许多其他细胞中,小MLCK(S-MLCK)是一种主要的亚型。S-MLCK是一种肌动球蛋白结合蛋白,牢固地附着在平滑肌细胞的收缩机制上。尽管如此,它可以离开这个位置,并有助于其他细胞过程。然而,尚未描述切换S-MLCK亚细胞定位的分子机制。
    定点诱变和体外蛋白质磷酸化用于研究S-MLCK肌动蛋白结合结构域内的离散体内磷酸化残基的功能作用。体外共沉降分析用于研究重组S-MLCK肌动蛋白结合片段与丝状肌动蛋白的相互作用。通过荧光显微镜和差异细胞提取研究了磷酸化S-MLCK突变体的亚细胞分布。
    S-MLCK肌动蛋白结合结构域在Ser25和/或Thr56上通过脯氨酸指导的蛋白激酶或这些翻译后修饰的磷酸化改变了S-MLCK在体外和细胞中与肌动蛋白丝的结合,并诱导S-MLCK亚细胞易位,对酶的催化特性没有影响。
    S-MLCK的氨基末端肌动蛋白结合域的磷酸化导致酶的差异亚细胞靶向,因此,有助于S-MLCK对细胞和组织刺激的各种环境依赖性反应。
    S-MLCK的生理功能可能通过其肌动蛋白识别域的磷酸化来调节,不同于催化和钙调蛋白调节域的调节。
    Myosin light chain kinase (MLCK) is a Ca2+-calmodulin-dependent enzyme dedicated to phosphorylate and activate myosin II to provide force for various motile processes. In smooth muscle cells and many other cells, small MLCK (S-MLCK) is a major isoform. S-MLCK is an actomyosin-binding protein firmly attached to contractile machinery in smooth muscle cells. Still, it can leave this location and contribute to other cellular processes. However, molecular mechanisms for switching the S-MLCK subcellular localization have not been described.
    Site-directed mutagenesis and in vitro protein phosphorylation were used to study functional roles of discrete in-vivo phosphorylated residues within the S-MLCK actin-binding domain. In vitro co-sedimentation analysis was applied to study the interaction of recombinant S-MLCK actin-binding fragment with filamentous actin. Subcellular distribution of phosphomimicking S-MLCK mutants was studied by fluorescent microscopy and differential cell extraction.
    Phosphorylation of S-MLCK actin-binding domain at Ser25 and/or Thr56 by proline-directed protein kinases or phosphomimicking these posttranslational modifications alters S-MLCK binding to actin filaments both in vitro and in cells, and induces S-MLCK subcellular translocation with no effect on the enzyme catalytic properties.
    Phosphorylation of the amino terminal actin-binding domain of S-MLCK renders differential subcellular targeting of the enzyme and may, thereby, contribute to a variety of context-dependent responses of S-MLCK to cellular and tissue stimuli.
    S-MLCK physiological function can potentially be modulated via phosphorylation of its actin recognition domain, a regulation distinct from the catalytic and calmodulin regulatory domains.
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  • 文章类型: Journal Article
    Filamin A (FLNA) is a large actin-binding cytoskeletal protein that is important for cell motility by stabilizing actin networks and integrating them with cell membranes. Interestingly, a C-terminal fragment of FLNA can be cleaved off by calpain to stimulate adaptive angiogenesis by transporting multiple transcription factors into the nucleus. Recently, increasing evidence suggests that FLNA participates in the pathogenesis of cardiovascular and respiratory diseases, in which the interaction of FLNA with transcription factors and/or cell signaling molecules dictate the function of vascular cells. Localized FLNA mutations associate with cardiovascular malformations in humans. A lack of FLNA in experimental animal models disrupts cell migration during embryogenesis and causes anomalies, including heart and vessels, similar to human malformations. More recently, it was shown that FLNA mediates the progression of myocardial infarction and atherosclerosis. Thus, these latest findings identify FLNA as an important novel mediator of cardiovascular development and remodeling, and thus a potential target for therapy. In this update, we summarized the literature on filamin biology with regard to cardiovascular cell function.
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  • 文章类型: Journal Article
    α-肌动蛋白蛋白是肌动蛋白交联剂的高度保守家族,可介导几种细胞骨架和肌节蛋白之间的相互作用。细胞骨架中的非肌节α-肌动蛋白1和α-肌动蛋白4交联肌动蛋白丝,而肌节α-肌动蛋白-2和α-肌动蛋白-3在将肌动蛋白丝锚定到肌肉Z线上中起着至关重要的作用。为了评估肌节Z线α-肌动蛋白同工型之间的周转动力学和结构/功能特性的差异,我们在原代肌纤维培养物中使用光漂白后荧光恢复(FRAP)。我们发现这些蛋白质的回收动力学遵循三种不同的模式:α-肌动蛋白2/α-肌动蛋白3的翻转最慢,α-肌动蛋白-1恢复到中等程度,α-肌动蛋白-4恢复最快。有趣的是,同工型的恢复模式在成纤维细胞的粘连斑块上逆转。这种差异表明,不同的α-肌动蛋白同工型在肌纤维中具有独特的缔合动力学,并且非肌肉同工型相互作用在肌节Z线上更加动态。使用α-肌动蛋白2/4嵌合蛋白进行的蛋白质结构域特异性研究表明,肌节和非肌肉同工型之间的差异动力学受N末端肌动蛋白结合结构域之间的协同相互作用调节,光谱蛋白样接头区和C末端钙调蛋白样EF手结构域。一起,这些发现表明α-肌动蛋白同种型在Z线的结合动力学中是独特的,并表明每个功能域的差异进化的相互作用和Z线关联能力。
    The α-actinin proteins are a highly conserved family of actin crosslinkers that mediate interactions between several cytoskeletal and sarcomeric proteins. Nonsarcomeric α-actinin-1 and α-actinin-4 crosslink actin filaments in the cytoskeleton, while sarcomeric α-actinin-2 and α-actinin-3 serve a crucial role in anchoring actin filaments to the muscle Z-line. To assess the difference in turnover dynamics and structure/function properties between the α-actinin isoforms at the sarcomeric Z-line, we used Fluorescence Recovery After Photobleaching (FRAP) in primary myofiber cultures. We found that the recovery kinetics of these proteins followed three distinct patterns: α-actinin-2/α-actinin-3 had the slowest turn over, α-actinin-1 recovered to an intermediate degree, and α-actinin-4 had the fastest recovery. Interestingly, the isoforms\' patterns of recovery were reversed at adhesion plaques in fibroblasts. This disparity suggests that the different α-actinin isoforms have unique association kinetics in myofibers and that nonmuscle isoform interactions are more dynamic at the sarcomeric Z-line. Protein domain-specific investigations using α-actinin-2/4 chimeric proteins showed that differential dynamics between sarcomeric and nonmuscle isoforms are regulated by cooperative interactions between the N-terminal actin-binding domain, the spectrin-like linker region and the C-terminal calmodulin-like EF hand domain. Together, these findings demonstrate that α-actinin isoforms are unique in binding dynamics at the Z-line and suggest differentially evolved interactive and Z-line association capabilities of each functional domain.
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  • 文章类型: Journal Article
    首先在发育中的大脑的视神经顶盖中发现了鸡drebrin亚型。尽管每个drebrin亚型的蛋白质表达的时间过程不同,通过对纯化蛋白质的生化分析,提示了它们的蛋白质结构之间的相似性。为了确定它们的蛋白质结构,进行了drebrincDNA的克隆。cDNA序列之间的比较表明,除了内部插入序列存在或不存在于它们的序列中之外,所有drebrincDNAs是相同的。鸡drebrin现在分为三种亚型,即,drebrinsE1,E2和A。基因组克隆表明,这三种同工型是通过编码单个drebrin基因插入序列的单个外显子的可变剪接产生的。该机制应以细胞类型特异性和发育阶段特异性的方式精确调节。Drebrin蛋白,这在各种脊椎动物物种中都很保守,虽然哺乳动物drebrin只有两种亚型,即,德累林E和德累林A,与具有三种亚型的鸡drebrin不同。Drebrin属于肌动蛋白解聚因子同源(ADF-H)结构域蛋白家族。除了ADF-H域,drebrin还有其他领域,包括肌动蛋白结合结构域和荷马结合基序。drebrin的蛋白质同工型和多个结构域的多样性可以与肌动蛋白细胞骨架和其他细胞内蛋白质差异相互作用,并调节不同的细胞过程。
    Chicken drebrin isoforms were first identified in the optic tectum of developing brain. Although the time course of protein expression was different in each drebrin isoform, the similarity between their protein structures was suggested by biochemical analysis of purified protein. To determine their protein structures, the cloning of drebrin cDNAs was conducted. Comparison between the cDNA sequences shows that all drebrin cDNAs are identical except that the internal insertion sequences are present or absent in their sequences. Chicken drebrin are now classified into three isoforms, namely, drebrins E1, E2, and A. Genomic cloning demonstrated that the three isoforms are generated by an alternative splicing of individual exons encoding the insertion sequences from single drebrin gene. The mechanism should be precisely regulated in cell-type-specific and developmental stage-specific fashion. Drebrin protein, which is well conserved in various vertebrate species, although mammalian drebrin has only two isoforms, namely, drebrin E and drebrin A, is different from chicken drebrin that has three isoforms. Drebrin belongs to an actin-depolymerizing factor homology (ADF-H) domain protein family. Besides the ADF-H domain, drebrin has other domains, including the actin-binding domain and Homer-binding motifs. Diversity of protein isoform and multiple domains of drebrin could interact differentially with the actin cytoskeleton and other intracellular proteins and regulate diverse cellular processes.
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  • 文章类型: Journal Article
    Evidence is accumulating for molecular microcompartments formed when proteins interact in localized domains with the cytoskeleton, organelle surfaces, and intracellular membranes. To understand the potential functional significance of protein microcompartmentation in plants, we studied the interaction of the glycolytic enzyme fructose bisphosphate aldolase with actin in Arabidopsis thaliana. Homology modelling of a major cytosolic isozyme of aldolase, FBA8, suggested that the tetrameric holoenzyme has two actin binding sites and could therefore act as an actin-bundling protein, as was reported for animal aldolases. This was confirmed by in vitro measurements of an increase in viscosity of F-actin polymerized in the presence of recombinant FBA8. Simultaneously, interaction with F-actin caused non-competitive inhibition of aldolase activity. We did not detect co-localization of an FBA8-RFP fusion protein, expressed in an fba8-knockout background, with the actin cytoskeleton using confocal laser-scanning microscopy. However, we did find evidence for a low level of interaction using FRET-FLIM analysis of FBA8-RFP co-expressed with the actin-binding protein GFP-Lifeact. Furthermore, knockout of FBA8 caused minor alterations of guard cell actin cytoskeleton morphology and resulted in a reduced rate of stomatal closure in response to decreased humidity. We conclude that cytosolic aldolase can be microcompartmented in vivo by interaction with the actin cytoskeleton and may subtly modulate guard cell behaviour as a result.
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  • 文章类型: Journal Article
    The roles of cell motility and angiogenetic processes in metastatic spread and tumor aggressiveness are well established and must be simultaneously targeted to maximize antitumor drug potency. This work evaluated the antitumorigenic capacities of human recombinant RNASET2 (hrRNASET2), a homologue of the Aspergillus niger T2RNase ACTIBIND, which has been shown to display both antitumorigenic and antiangiogenic activities. hrRNASET2 disrupted intracellular actin filament and actin-rich extracellular extrusion organization in both CT29 colon cancer and A375SM melanoma cells and induced a significant dose-dependent inhibition of A375SM cell migration. hrRNASET2 also induced full arrest of angiogenin-induced tube formation and brought to a three-fold lower relative HT29 colorectal and A375SM melanoma tumor volume, when compared to Avastin-treated animals. In parallel, mean blood vessel counts were 36.9% lower in hrRNASET2-vs. Avastin-treated mice and survival rates of hrRNASET2-treated mice were 50% at 73 days post-treatment, while the median survival time for untreated animals was 22 days. Moreover, a 60-day hrRNASET2 treatment period reduced mean A375SM lung metastasis foci counts by three-fold when compared to untreated animals. Taken together, the combined antiangiogenic and antitumorigenic capacities of hrRNASET2, seemingly arising from its direct interaction with intercellular and extracellular matrices, render it an attractive anticancer therapy candidate.
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