VIROLOGY

病毒学
  • 文章类型: Journal Article
    背景:严重急性呼吸道综合征冠状病毒2(SARS-CoV-2)的自然感染或疫苗接种会引发针对关键病毒抗原的抗体产生。然而,与在埃塞俄比亚接种疫苗的个体相比,关于自然感染个体产生的抗体水平的证据有限.因此,我们旨在检测和比较自然感染和接种疫苗的个体产生的SARS-CoV-2抗体.
    方法:我们从2022年11月至2023年4月在亚的斯亚贝巴的10个选定的医疗机构对355名自然感染和355名接种疫苗的个体进行了多中心横断面研究。埃塞俄比亚。我们在参与者到达医疗机构后连续登记,直到达到所需的样本量。我们使用结构化问卷收集有关参与者的人口统计学和临床特征的数据。我们还从所有参与者收集了3-5ml血液样品,并使用Cobas6000测试了抗-Spike(抗-S)和抗核衣壳(抗-N)抗体。我们利用频率,意思是,或中位数来描述数据,Mann-WhitneyU测试比较组,和广义线性回归模型来评估与抗S抗体浓度相关的因素。我们用SPSS26版分析数据,显著性水平设置为P值<0.05。
    结果:在自然感染的参与者中,352(99.5%)具有抗S抗体,所有(100%)具有抗N抗体,而在接种疫苗的参与者中,所有(100%)都有抗S抗体,323(91.6%)有抗N抗体。由接种疫苗的个体产生的抗S抗体显著(P<0.001)高于由于自然感染产生的那些。年轻(P=0.004),有高血压(P<0.001),并且患有糖尿病(P<0.001)与较低的抗S抗体水平显着相关,尽管最近接种了疫苗并且疫苗剂量较高,但在接种疫苗的参与者中,与较高的抗S抗体浓度显着相关。患有糖尿病(P<0.001)与自然感染参与者的抗S浓度降低显着相关。
    结论:在自然感染和接种疫苗的个体中都有较高的血清阳性率。然而,接种疫苗的个体的SARS-CoV-2抗体水平高于自然感染者,这凸显了疫苗接种对埃塞俄比亚增加COVID-19保护的重大贡献。
    BACKGROUND: Natural infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) or vaccination triggers antibody production against key viral antigens. However, there is limited evidence on the levels of antibodies produced in naturally infected individuals compared to those vaccinated in Ethiopia. Therefore, we aimed to detect and compare SARS-CoV-2 antibodies produced by naturally infected and vaccinated individuals.
    METHODS: We conducted a multicenter cross-sectional study among a total of 355 naturally infected and 355 vaccinated individuals from November 2022 to April 2023 at 10 selected health facilities in Addis Ababa, Ethiopia. We enrolled the participants consecutively upon their arrival at health facilities until the required sample size was achieved. We used a structured questionnaire to collect data on the demographic and clinical characteristics of the participants. We also collected 3-5 ml of blood samples from all participants and tested for anti-Spike (anti-S) and anti-nucleocapsid (anti-N) antibodies using Cobas 6000. We utilized frequency, mean, or median to describe the data, the Mann-Whitney U test to compare groups, and a generalized linear regression model to assess factors associated with anti-S antibody concentration. We analyzed the data with SPSS version 26, and the level of significance was set at P-value < 0.05.
    RESULTS: Of the naturally infected participants, 352 (99.5%) had anti-S antibodies and all (100%) had anti-N antibodies, whereas among vaccinated participants, all (100%) had anti-S antibodies, while 323 (91.6%) had anti-N antibodies. Anti-S antibodies produced by vaccinated individuals were significantly (P < 0.001) higher than those produced as a result of natural infection. Being young (P = 0.004), having hypertension (P < 0.001), and having diabetes (P < 0.001) were significantly associated with lower anti-S antibody levels, while being recently vaccinated and having a higher number of vaccine doses were significantly associated with higher anti-S antibody concentrations in vaccinated participants. Having diabetes (P < 0.001) were significantly associated with lower anti-S concentrations in participants who were naturally infected.
    CONCLUSIONS: There is a high seropositivity rate in both naturally infected and vaccinated individuals. However, vaccinated individuals had higher levels of SARS-CoV-2 antibodies than those who were naturally infected, which highlights the significant contribution of vaccination in increasing the protection of COVID-19 in Ethiopia.
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  • 文章类型: News
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  • 文章类型: Journal Article
    预防阴性COVID-19感染结果与抗体反应质量相关,对其年龄和性别的差异知之甚少。网络方法在整个COVID-19大流行期间确定了抗体反应中的性别和年龄效应以及从头感染和疫苗接种的中和潜力。中和值遵循严重急性呼吸综合征冠状病毒2(SARS-CoV-2)特异性受体结合免疫球蛋白G(RIgG),刺突免疫球蛋白G(SigG)和刺突和受体免疫球蛋白G(S,和RIgA)基于COVID-19状态的水平。血清免疫球蛋白A(IgA)抗体滴度仅在40-60岁(y.o.)的女性中与中和相关。网络分析发现,接种剂量2后,男性可以改善IgA反应。复杂的相关分析发现,接种疫苗在老年人中诱导较少的抗体同种型转换和中和,尤其是女性。性别依赖性抗体和中和在老年男性中衰减最快。显示的性别和年龄表征可以指导整合细胞介导的反应的研究,以确定保护的尚难以捉摸的相关性,并告知年龄和性别的精确疫苗设计。
    Prevention of negative COVID-19 infection outcomes is associated with the quality of antibody responses, whose variance by age and sex is poorly understood. Network approaches identified sex and age effects in antibody responses and neutralization potential of de novo infection and vaccination throughout the COVID-19 pandemic. Neutralization values followed severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-specific receptor binding immunoglobulin G (RIgG), spike immunoglobulin G (SIgG) and spike and receptor immunoglobulin G (S, and RIgA) levels based on COVID-19 status. Serum immunoglobulin A (IgA) antibody titers correlated with neutralization only in females 40-60 years old (y.o.). Network analysis found males could improve IgA responses after vaccination dose 2. Complex correlation analyses found vaccination induced less antibody isotype switching and neutralization in older persons, especially in females. Sex-dependent antibody and neutralization decayed the fastest in older males. Shown sex and age characterization can direct studies integrating cell-mediated responses to define yet elusive correlates of protection and inform age and sex precision-focused vaccine design.
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  • 文章类型: Journal Article
    除了中和抗体,这被认为是疫苗免疫原性的重要指标,Fc介导的抗体功能可有助于抗体介导的保护。它们受到结构抗体性质如亚类和Fc聚糖组成的强烈影响。我们在这里应用了系统血清学方法来剖析MVA-MERS-S诱导的体液免疫反应,针对中东呼吸综合征冠状病毒(MERS-CoV)的MVA载体疫苗。基于先前报告MVA-MERS-S安全性和免疫原性的研究,我们的研究强调了后期提升的潜力,在Prime一年后进行管理,与初级疫苗接种系列相比,增强中和和Fc介导的抗体功能。观察到对MERS-CoV刺突蛋白S1和S2亚基具有特异性的抗体的独特特征,关于亚类和聚糖组成以及Fc功能。这些发现强调了使用MVA-MERS-S进行后期同源加强疫苗接种的益处,并且可能对设计未来的冠状病毒疫苗感兴趣。
    Besides neutralizing antibodies, which are considered an important measure for vaccine immunogenicity, Fc-mediated antibody functions can contribute to antibody-mediated protection. They are strongly influenced by structural antibody properties such as subclass and Fc glycan composition. We here applied a systems serology approach to dissect humoral immune responses induced by MVA-MERS-S, an MVA-vectored vaccine against the Middle East respiratory syndrome coronavirus (MERS-CoV). Building on preceding studies reporting the safety and immunogenicity of MVA-MERS-S, our study highlights the potential of a late boost, administered one year after prime, to enhance both neutralizing and Fc-mediated antibody functionality compared to the primary vaccination series. Distinct characteristics were observed for antibodies specific to the MERS-CoV spike protein S1 and S2 subunits, regarding subclass and glycan compositions as well as Fc functionality. These findings highlight the benefit of a late homologous booster vaccination with MVA-MERS-S and may be of interest for the design of future coronavirus vaccines.
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  • 文章类型: News
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  • 文章类型: Journal Article
    HSV-2再活化位点处的皮肤富含HSV-2特异性T细胞。为了评估免疫治疗疫苗是否可以引发基于皮肤的记忆T细胞,我们通过T细胞受体(TCR)β链(TRB)测序研究了在接种无复制能力的全病毒HSV-2候选疫苗(HSV529)之前和之后的皮肤活检和来自PBMC的HSV-2反应性CD4+T细胞.在第一疫苗剂量后,皮肤TRB库中来自PBMC的HSV-2反应性CD4+TRB序列的表示增加。我们发现疫苗接种后的持续扩张是独一无二的,在从PBMC分离的HSV-2反应性CD4+T细胞中未检测到的皮肤型T细胞克隆型。在一个参与者中,免疫优势的转换发生在疫苗接种后TCRαβ对的出现,但在血液中未检测到.通过在基于Jurkat的NR4A1报告系统中表达合成TCR,显示该TCRαβ具有HSV-2反应性。HSV-2再激活区域的皮肤具有与循环不同的寡克隆TRB库。定义治疗性疫苗接种对HSV-2特异性TRB库的影响需要基于组织的评估。
    The skin at the site of HSV-2 reactivation is enriched for HSV-2-specific T cells. To evaluate whether an immunotherapeutic vaccine could elicit skin-based memory T cells, we studied skin biopsies and HSV-2-reactive CD4+ T cells from PBMCs by T cell receptor (TCR) β chain (TRB) sequencing before and after vaccination with a replication-incompetent whole-virus HSV-2 vaccine candidate (HSV529). The representation of HSV-2-reactive CD4+ TRB sequences from PBMCs in the skin TRB repertoire increased after the first vaccine dose. We found sustained expansion after vaccination of unique, skin-based T cell clonotypes that were not detected in HSV-2-reactive CD4+ T cells isolated from PBMCs. In one participant, a switch in immunodominance occurred with the emergence of a TCR αβ pair after vaccination that was not detected in blood. This TCRαβ was shown to be HSV-2 reactive by expression of a synthetic TCR in a Jurkat-based NR4A1 reporter system. The skin in areas of HSV-2 reactivation possessed an oligoclonal TRB repertoire that was distinct from the circulation. Defining the influence of therapeutic vaccination on the HSV-2-specific TRB repertoire requires tissue-based evaluation.
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  • 文章类型: Journal Article
    目的:了解父母对加拿大先天性巨细胞病毒(cCMV)新生儿普遍筛查(UNS)的看法。
    方法:定性,患者主导的研究使用患者和社区参与研究方法,包括在线焦点小组和深入的个人访谈,以了解父母对cCMVUNS的偏好。使用归纳主题分析和叙事故事分析对数据进行迭代分析。
    方法:在2023年10月至12月通过视频会议进行的加拿大范围内的研究。
    方法:来自加拿大五个省份的12名参与者,他们自我鉴定为18岁或18岁以上,并且父母有巨细胞病毒(CMV)或cCMV的生活经历。
    结果:我们确定了三个主题:(1)对cCMV的UNS的态度,包括参与者对UNS的一致支持,并确认父母的焦虑对筛查没有威慑作用,(2)cCMV诊断,包括将cCMV诊断与获得治疗和医疗支持相结合的重要性,以及(3)对cCMV的认识,参与者分享了他们对公众和孕妇缺乏对cCMV意识的失望。
    结论:父母焦虑对cCMV的UNS没有威慑作用。患有cCMV的儿童及其家人应该有一切机会取得最佳结果。UNS为患有cCMV的儿童提供了早期干预的机会,也有助于提高认识和教育,以防止未来的CMV感染。
    OBJECTIVE: To understand parental perspectives regarding universal newborn screening (UNS) for congenital cytomegalovirus (cCMV) in Canada.
    METHODS: A qualitative, patient-led study using the Patient and Community Engagement Research approach consisting of online focus groups and in-depth individual interviews to understand parental preferences regarding UNS for cCMV. Data were analysed iteratively using inductive thematic analysis and narrative story analysis.
    METHODS: Canada-wide study conducted via video conference from October to December 2023.
    METHODS: 12 participants from five Canadian provinces who self-identified as 18 years of age or older and as having parental lived experience with cytomegalovirus (CMV) or cCMV participated in the study.
    RESULTS: We identified three themes: (1) attitudes about UNS for cCMV, including participants\' unanimous support for UNS and confirmation that parental anxiety is not a deterrent for screening, (2) cCMV diagnosis, including the importance of coupling cCMV diagnosis with access to treatment and medical support and (3) awareness of cCMV, where participants shared their frustration about the lack of public and pregnant people\'s awareness of cCMV.
    CONCLUSIONS: Parental anxiety is not a deterrent for UNS for cCMV. Children with cCMV and their families deserve every opportunity to attain their best possible outcomes. UNS offers children with cCMV access to early intervention if they need it, and also helps to raise awareness and education to prevent future CMV infections.
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  • 文章类型: Journal Article
    一种基于蛋白质表达柑橘Tristeza病毒(CTV)的载体构建体,pT36CA-V1.3,从T36菌株(T36CA)的加利福尼亚分离株获得,被重新设计为病毒诱导的基因沉默(VIGS)系统,旨在用于加利福尼亚柑橘的研究。用有义或反义方向的截短的柑橘(Cm)植物烯脱脂酶(PDS)基因序列工程化的VIGS构建体在沉默内源性CmPDS基因方面同样有效。在优化向量性能的并行努力中,pT36CA-V1.3开放阅读框1a中的两个非同义核苷酸被替换为T36CAcDNA文库参考序列中保守的核苷酸。由此产生的病毒,T36CA-V1.4(具有一个氨基酸修饰:D760N)和T36CA-V1.5(具有两个氨基酸修饰:D760N和P1174L),与T36CA-V1.3一起,分别在烟草和大叶菜中繁殖。新出现的叶子提取物的酶联免疫吸附测定(ELISA)测量表明,在接种后5周时,所有三种病毒在N.benthamiana植物中的积累水平相似。在接种后8至12个月(mpi)窗口内,T36CA-V1.4-和-V1.5感染的大叶梭菌样品的ELISA值显着高于T36CA-V1.3感染的样品,表明T36CA-V1.4和-V1.5的积累高于T36CA-V1.3。然而,在36mpi,ELISA值表明所有三种病毒的积累水平相似.当感染了这三种病毒中的每一种的大叶菜被嫁接到商业柑橘品种上时,数量有限的受体植物被感染,证明了T36CA对加利福尼亚种植的商业柑橘的微弱但(首次)成功交付。
    A protein-expressing citrus tristeza virus (CTV)-based vector construct, pT36CA-V1.3, obtained from a California isolate of the T36 strain (T36CA), was retooled into a virus induced gene silencing (VIGS) system intended for use with studies of California citrus. VIGS constructs engineered with a truncated Citrus macrophylla (Cm) PHYTOENE DESATURASE (PDS) gene sequence in the sense or anti-sense orientation worked equally well to silence the endogenous CmPDS gene. In a parallel effort to optimize vector performance, two non-synonymous nucleotides in open reading frame 1a of pT36CA-V1.3 were replaced with those conserved in the reference sequences from the T36CA cDNA library. The resulting viruses, T36CA-V1.4 (with one amino acid modification: D760N) and T36CA-V1.5 (with two amino acid modifications: D760N and P1174L), along with T36CA-V1.3 were individually propagated in Nicotiana benthamiana and C. macrophylla plants. Enzyme-linked immunosorbent assay (ELISA) measurements of extracts of the newly emerged leaves suggested that all three viruses accumulated to similar levels in N. benthamiana plants at 5 week-post-inoculation. ELISA values of T36CA-V1.4- and -V1.5-infected C. macrophylla samples were significantly higher than that of T36CA-V1.3-infected samples within an 8 to 12 month-post-inoculation (mpi) window, suggesting a higher accumulation of T36CA-V1.4 and -V1.5 than T36CA-V1.3. However, at 36 mpi, the ELISA values suggested that all three viruses accumulated to similar levels. When C. macrophylla plants infected with each of the three viruses were grafted to commercial citrus varieties, a limited number of receptor plants became infected, demonstrating a weak but nonetheless (the first) successful delivery of T36CA to California-grown commercial citrus.
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  • 文章类型: Journal Article
    新出现的SARS-CoV-2变体的免疫逃避极大地破坏了当前的疫苗接种工作,呼吁更新疫苗成分。为了确定针对循环JN.1的最佳加强候选物,对一组变体尖峰进行了表征。omicron尖峰表现出减少的质膜表达,伴随着较低的细胞-细胞融合,但增加病毒进入。通过肌内免疫进行DNA初免-DNA增强或DNA初免-腺病毒载体疫苗增强的方案引发了针对除BA.2.86和JN.1以外的所有变体的中和抗体(NAb)和T细胞反应。除BA.2.86和JN.1外,鼻内免疫在支气管肺泡灌洗中诱导高IgA和NAb滴度。对于所有测试的免疫原,T细胞应答通常是相当的。JN.1在一个免疫队列中完全逃脱了NAb,和突破性感染略有提高抗体滴度。总的来说,这项研究表明,在引发针对JN.1菌株的NAb方面存在内在的困难,而基于XBB和EG.5.1的疫苗在产生交叉反应性NAb方面相对优越。
    The immune evasion of emerging SARS-CoV-2 variants significantly undermines current vaccination efforts, calling for an updated vaccine composition. To identify optimal booster candidates against circulating JN.1, a panel of variant spikes were characterized. The omicron spikes exhibited reduced plasma membrane expression, accompanied by lower cell-cell fusion but increased viral entry. Regimens with DNA prime-DNA boost or DNA prime-adenoviral vectored vaccine boost by intramuscular immunization elicited neutralizing antibody (NAbs) and T cell responses against all variants except BA.2.86 and JN.1. Intranasal immunization induced high IgA and NAb titers in bronchoalveolar lavage against all variants except BA.2.86 and JN.1. T cell responses were generally comparable for all immunogens tested. JN.1 completely escaped NAbs in one immunized cohort, and breakthrough infections marginally boosted antibody titers. Overall, this study indicates intrinsic difficulty in eliciting NAbs against the JN.1 strain, whereas vaccines based on XBB and EG.5.1 are relatively superior in generating cross-reactive NAbs.
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  • 文章类型: Journal Article
    细胞胆固醇在甲型流感病毒(IAV)胞吞和复制中起重要作用。然而,IAV感染如何调节胆固醇的生物合成仍然知之甚少.这里,我们报道IAV感染激活SREBP2并诱导HMGCR的表达,胆固醇合成途径中的限速酶。SREBP2缺陷抑制IAV诱导的HMGCR表达和病毒复制。机械上,IAV感染激活JAK2和STAT3,通过其抑制剂或基因敲除抑制JAK2和STAT3活性,下调IAV诱导的SREBP2和HMGCR表达和IAV复制,降低细胞胆固醇和病毒与宿主细胞结合的含量。外源性胆固醇逆转S3I-201和STAT3缺乏对病毒复制的抑制作用。STAT3或JAK2过表达增加SREBP2及其下游靶基因的表达,导致IAV复制增加。这些观察结果共同表明,STAT3活化通过诱导SREBP2表达和增加胆固醇生物合成来促进IAV复制。
    Cellular cholesterol plays an important role in influenza A virus (IAV) endocytosis and replication. However, how IAV infection regulates cholesterol biosynthesis remains poorly understood. Here, we report that IAV infection activates SREBP2 and induces the expression of HMGCR, a rate-limiting enzyme in cholesterol synthesis pathway. SREBP2 deficiency suppresses IAV-induced HMGCR expression and virus replication. Mechanistically, IAV infection activates JAK2 and STAT3, inhibition of JAK2 and STAT3 activity by their inhibitors or by gene knockout downregulates IAV-induced SREBP2 and HMGCR expression and IAV replication, reduces the content of cellular cholesterol and virus binding to host cells. Exogenous cholesterol reverses the inhibitory effect of S3I-201 and STAT3 deficiency on virus replication. STAT3 or JAK2 overexpression increases the expression of SREBP2 and its downstream target genes, leading to increased IAV replication. These observations collectively suggest that STAT3 activation facilitates IAV replication by inducing SREBP2 expression and increasing cholesterol biosynthesis.
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