Two-dimensional correlation infrared spectroscopy

  • 文章类型: Journal Article
    蛋白质的红外光谱(IR)信号容易被杂质信号覆盖,并且使用光谱数据计算的二级结构含量的准确性较差。为了应对这一挑战,提出了一种快速高精度的蛋白质二级结构定量模型。首先,基于60组大豆分离蛋白(SPI)红外光谱数据进行了二维相关计算,产生了二维相关红外光谱(2DCOS-IR)。随后,从2DCOS-IR中提取了四个二级结构的最佳特征带。最终,偏最小二乘(PLS),长短期记忆(LSTM),和双向长短期记忆(BILSTM)算法用于对提取的特征带进行建模并预测SPI二级结构的内容。结果表明,BILSTM结合2DCOS-IR模型(2DCOS-BILSTM)表现出优异的预测性能。α-螺旋的预测集,β-sheet,β转角,和随机线圈分别指定为0.9257、0.9077、0.9476和0.8443,其相应的RMSEP值分别为0.26,0.48,0.20和0.15.该策略提高了IR的精度,促进了SPI中二级结构组分的快速识别,这对蛋白质工业生产的发展至关重要。
    The infrared spectroscopy (IR) signal of protein is prone to being covered by impurity signals, and the accuracy of the secondary structure content calculated using spectral data is poor. To tackle this challenge, a rapid high-precision quantitative model for protein secondary structure was proposed. Firstly, a two-dimensional correlation calculation was performed based on 60 groups of soybean protein isolates (SPI) infrared spectroscopy data, resulting in a two-dimensional correlation infrared spectroscopy (2DCOS-IR). Subsequently, the optimal characteristic bands of the four secondary structures were extracted from the 2DCOS-IR. Ultimately, partial least squares (PLS), long short-term memory (LSTM), and bidirectional long short-term memory (BILSTM) algorithms were used to model the extracted characteristic bands and predict the content of SPI secondary structure. The findings suggested that BILSTM combined with 2DCOS-IR model (2DCOS-BILSTM) exhibited superior predictive performance. The prediction sets for α-helix, β-sheet, β-turn, and random coil were designated as 0.9257, 0.9077, 0.9476, and 0.8443, respectively, and their corresponding RMSEP values were 0.26, 0.48, 0.20, and 0.15. This strategy enhances the precision of IR and facilitates the rapid identification of secondary structure components within SPI, which is vital for the advancement of protein industrial production.
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  • 文章类型: Journal Article
    两种新的钒硼酸盐化合物,[Cu(en)2]3[Li(H2O)]4[Li(H2O)3]2[V12B18O50(OH)10(H2O)]2·33.5H2O(1)和(H2en)4[Li(H2O)]4[V12B18O55(OH)5(H2O)]·14H2O(2),除了温度外,在相同的条件下通过水热合成合成。结构分析表明,虽然两者都含有[V12B18O60]n-簇阴离子,不同的抗衡阳离子可能导致[V12B18O60]n-簇阴离子骨架的变化。在化合物1中,V4+/V5+比率为10:2;而在化合物2中,比率为11:1。推测不同的抗衡阳离子可能会影响簇阴离子的价态。在这项研究中,量子化学计算表明,这两种化合物的芳香性和活性是不同的,和磁扰动下的二维相关红外光谱(2D-COS-IR)证实,由于两种化合物的V4/V5比例和芳香性不同,官能团振动对磁场的响应峰不同。电化学分析表明,化合物2表现出较高的电催化活性。量子化学计算结果不仅与2D-COS-IR光谱的变化一致,而且与从电化学性能实验中获得的结论一致。总的来说,这项工作提出了一种新的策略,用于通过将2D-COS-IR与量子化学计算相结合,解释由于引入不同的抗衡阳离子而引起的钒硼酸盐阴离子骨架的变化。
    Two novel vanadoborate compounds, [Cu(en)2]3[Li(H2O)]4[Li(H2O)3]2[V12B18O50(OH)10(H2O)]2·33.5H2O (1) and (H2en)4[Li(H2O)]4[V12B18O55(OH)5(H2O)]·14H2O (2), were synthesized via hydrothermal synthesis under identical conditions except for temperature. Structural analysis revealed that although both contain [V12B18O60]n- cluster anion, the different countercations potentially lead to variations in the [V12B18O60]n- cluster anion skeletons. In compound 1, the V4+/V5+ ratio was 10:2; while in compound 2 the ratio was 11:1. It is speculated that different countercations may influence the valence states of cluster anions. In this study, quantum chemical calculations revealed that the aromaticity and activity of the two compounds were different, and two-dimensional correlation infrared spectroscopy (2D-COS-IR) under magnetic perturbation confirmed that distinct response peaks of functional group vibrations to the magnetic field due to the different V4+/V5+ ratios and aromaticity of the two compounds. An electrochemical analysis revealed that compound 2 exhibits higher electrocatalytic activity. The results of quantum chemical calculations are aligned not only with the changes in the 2D-COS-IR spectra but also with the conclusions obtained from experiments on electrochemical properties. Overall, this work proposes a novel strategy for interpreting the alteration of vanadoborate anionic skeleton due to the introduction of different countercations by combining 2D-COS-IR with quantum chemical calculations.
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  • 文章类型: Journal Article
    对老化的木质结构部件的吸湿行为有更多的了解,这与尺寸稳定性有着密切的关系,需要有效评估和保存历史文物。这项研究的重点是老化对中国历史木制建筑包头梁样品的影响。对自然老化的吸附等温线和磁滞回线的分析,腐烂样品(AOS),老化的声音样本(AIS),和参考样本(RS),使用经典的吸附等温线模型表明,包头梁中同一生长环的样品的水分吸附行为可能存在显着差异。AOS表现出比AIS更高的吸湿性,并且这两种样品都比RS更吸湿。此外,AOS的单层/多层水分含量始终高于AIS和RS。此外,傅里叶变换红外,二阶导数红外,和二维相关红外光谱用于研究样品中的化学变化。随着木材老化,样品的相对半纤维素和木质素含量显着变化。此外,AOS表现出最高的草酸钙含量,这可能与真菌感染有关。总的来说,这些结果为老化对木材样品的影响和木结构的尺寸稳定性提供了有价值的见解,这可以为未来关于保存或修复老化木结构的方法的研究提供信息。
    A greater understanding of moisture sorption behaviour of aged wooden structural components, which has a close relationship with dimensional stability, is required to effectively evaluate and preserve historical artefacts. This study focused on the effects of aging on Baotou beam samples from a Chinese historical wooden building. An analysis of the sorption isotherms and hysteresis loops of a naturally aged, decayed sample (AOS), an aged sound sample (AIS), and a reference sample (RS), using classical sorption isotherm models revealed that the moisture sorption behaviour of samples from the same growth ring in a Baotou beam can differ significantly. AOS showed higher hygroscopicity than AIS, and both these samples were more hygroscopic than RS. Furthermore, the mono/multilayer moisture contents of AOS were always higher than those of AIS and RS. In addition, Fourier transform infrared, second-derivative infrared, and two-dimensional correlation infrared spectroscopy were used to investigate chemical changes in the samples. The relative hemicellulose and lignin contents of the samples changed significantly with wood aging. Furthermore, AOS exhibited the highest calcium oxalate content, which may be associated with fungal infections. Overall, these results provide valuable insights into the effects of aging on wood samples and the dimensional stability of timber structures, which could inform future research on methods for the preservation or restoration of aging timber structures.
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  • 文章类型: Journal Article
    As a kind of expensive perfume and valuable herb, Aquilariae Lignum Resinatum (ALR) is often adulterated for economic motivations. In this research, Fourier transform infrared (FT-IR) spectroscopy is employed to establish a simple and quick method for the adulteration screening of ALR. First, the principal chemical constituents of ALR are characterized by FT-IR spectroscopy at room temperature and two-dimensional correlation infrared (2D-IR) spectroscopy with thermal perturbation. Besides the common cellulose and lignin compounds, a certain amount of resin is the characteristic constituent of ALR. Synchronous and asynchronous 2D-IR spectra indicate that the resin (an unstable secondary metabolite) is more sensitive than cellulose and lignin (stable structural constituents) to the thermal perturbation. Using a certified ALR sample as the reference, the infrared spectral correlation threshold is determined by 30 authentic samples and 6 adulterated samples. The spectral correlation coefficient of an authentic ALR sample to the standard reference should be not less than 0.9886 (p=0.01). Three commercial adulterated ALR samples are identified by the correlation threshold. Further interpretation of the infrared spectra of the adulterated samples indicates the common adulterating methods - counterfeiting with other kind of wood, adding ingredient such as sand to increase the weight, and adding the cheap resin such as rosin to increase the content of resin compounds. Results of this research prove that FT-IR spectroscopy can be used as a simple and accurate quality control method of ALR.
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  • 文章类型: Journal Article
    Many macrofungus sclerotia are well-known medicinal herbs, health food and nutritional supplements. However, the prevalent adulterant commercial products are major hindrances to their incorporation into mainstream medical use in many countries. The mushroom sclerotia of Lignosus rhinocerotis, Poria cocos, Polyporus umbellatus, Pleurotus tuber-regium and Omphalia lapidescens are commonly used in traditional Chinese medicine. In this study, IR macro-fingerprint method was used in the identification of these sclerotia. The results showed that the spectrum of L. rhinocerotis (LR) was comparable with P. cocos with 94.4% correlation, except that the peak at 1543cm(-1) of LR appeared in lower intensity. The spectrum of P. umbellatus and P. tuber-regium was also correlated (91.5%), as both spectra could be clearly discriminated in that P. umbellatus spectrum has small base peaks located at the range of 1680-1500cm(-1). O. lapidescens was not comparable with all the other sclerotia as its spectrum was totally different. Its base peak was broad and derivated equally along the range. The first IR has revealed the dissimilarity among five mushrooms sclerotia. The second derivative and 2DIR further enhanced the identification in detail.
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  • 文章类型: Comparative Study
    Baeckea frutescens or locally known as Cucur atap is used as antibacterial, antidysentery, antipyretic and diuretic agent. In Malaysia and Indonesia, they are used as an ingredient of the traditional medicine given to mothers during confinement. A three-steps infra-red (IR) macro-fingerprinting method combining conventional IR spectra, and the secondary derivative spectra with two dimensional infrared correlation spectroscopy (2D-IR) have been proved to be effective methods to examine a complicated mixture such as herbal medicines. This study investigated the feasibility of employing multi-steps IR spectroscopy in order to study the main constituents of B. frutescens and its different extracts (extracted by chloroform, ethyl acetate, methanol and aqueous in turn). The findings indicated that FT-IR and 2D-IR can provide many holistic variation rules of chemical constituents. The structural information of the samples indicated that B. frutescens and its extracts contain a large amount of flavonoids, since some characteristic absorption peaks of flavonoids, such as ∼1600cm(-1), ∼1500cm(-1), ∼1450cm(-1), and ∼1270cm(-1) can be observed. The macroscopical fingerprint characters of FT-IR and 2D-IR spectra can not only provide the information of main chemical constituents in medicinal materials and their different extracts, but also compare the components differences among the similar samples. In conclusion, the multi-steps IR macro-fingerprint method is rapid, effective, visual and accurate for pharmaceutical research.
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