Tunicate

外衣
  • 文章类型: Journal Article
    作为丰富的海洋生物资源,可以在食品工业中开发被膜。然而,对其化学成分和营养成分的了解有限,禁止进一步应用。在这项研究中,两种常见的可食用被膜动物,卤虫(HR)和卤虫(HA),进行了水分综合成分分析,蛋白质,脂质,纤维素,灰,氨基酸,脂肪酸,非纤维素碳水化合物和矿物质。在身长和体重方面,红HR比紫色HA大得多,水分在82.98%-90.92%以内。对于两种物种,非可食用外壳部分(OS)和可食用内脏器官部分(IO)具有约3:2的干重比。一般来说,对于HR和HA,IO在蛋白质和脂质中更丰富。相比之下,OS有更高的纤维素含量,确认IO作为营养海鲜的更好适用性。IO富含必需氨基酸和不饱和脂肪酸,OS具有更丰富的饱和脂肪酸。检测到的非纤维素单糖范围为0.47%至1.18%,并且表明存在一些硫酸化聚糖。HR的IO具有较高的必需矿物质含量,如Cu,Zn,Fe,HA的IO表现出较高的K含量。总而言之,这项研究确定了不同被囊动物物种和各种解剖部位之间的化学成分和营养分布差异,指导开发特定策略,以开发适当的食物应用。
    As an abundant marine bioresource, tunicates could be exploited in the food industry. However, limited knowledge of their chemical composition and nutritional profiles prohibited further application. In this study, two common edible tunicate species, Halocynthia roretzi (HR) and Halocynthia aurantium (HA), were subjected to comprehensive composition analysis in terms of moisture, protein, lipids, cellulose, ash, amino acids, fatty acids, non-cellulose carbohydrates and minerals. Reddish HR was much bigger than purple HA with respect to body length and weight, and their moisture fell within 82.98 %-90.92 %. The non-edible outer shell part (OS) and edible internal organs part (IO) had a dry weight ratio of around 3:2 for both two species. Generally, for both HR and HA, IO was more abundant in protein and lipids. In contrast, OS had much higher cellulose contents, confirming the better suitability of IO as a nutritional seafood. IO was richer in essential amino acids and unsaturated fatty acids, while OS had more abundant saturated fatty acids. The detected non-cellulose monosugars ranged from 0.47 % to 1.18 % and indicated the presence of some sulfated glycans. IO of HR had higher contents of essential minerals, such as Cu, Zn, and Fe, while IO of HA showed a higher K content. To sum up, this study identified the chemical composition and nutritional profile variations among different tunicate species and various dissected parts, guiding the development of specific strategies to exploit tunicates for proper food applications.
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  • 文章类型: Journal Article
    海鞘人的心,海洋无脊椎动物脊索动物,具有管状结构,心跳从一端传播到另一端。脉动波的方向在海鞘及其亲属的心脏中间歇性地反转;然而,潜在机制尚不清楚.我们在此进行了一系列实验,以表征孤立心脏及其碎片中的起搏器系统,并应用数学模型来检查导致心脏逆转的条件。Ciona的孤立心脏以每分钟20至25次(bpm)的速度自主产生脉动波,并以1至10分钟的间隔进行逆转。孤立心脏的实验平分表明,独立的起搏器存在于每一侧,并且它们的跳动频率随着表达双峰节律而周期性变化,其中包括~1.25至5.5分钟的加速/减速循环,跳动率在0至25bpm之间。只有包括5%或更短的心脏导管末端区域的碎片保持自主搏动节律,而其他地区则没有。我们的数学模型,基于FitzHugh-Nagumo方程应用于细胞的一维排列,证明了两个独立的终端起搏器表示的频率之间的差异决定了传播波的方向。末端起搏器在兴奋和振荡模式之间的状态变化以及其内源性振荡频率的变化足以导致心脏逆转。这些结果表明,Ciona心脏中脉动波的方向根据远程耦合的末端起搏器独立表达的变化节律而反向。
    The heart of ascidians (marine invertebrate chordates) has a tubular structure, and heartbeats propagate from one end to the other. The direction of pulsation waves intermittently reverses in the heart of ascidians and their relatives; however, the underlying mechanisms remain unclear. We herein performed a series of experiments to characterize the pacemaker systems in isolated hearts and their fragments, and applied a mathematical model to examine the conditions leading to heart reversals. The isolated heart of Ciona robusta autonomously generated pulsation waves at ∼20 to 25 beats min-1 with reversals at ∼1 to 10 min intervals. Experimental bisections of isolated hearts revealed that independent pacemakers resided on each side and also that their beating frequencies periodically changed as they expressed bimodal rhythms, which comprised an ∼1.25 to 5.5 min acceleration/deceleration cycle of a beating rate of between 0 and 25 beats min-1. Only fragments including 5% or shorter terminal regions of the heart tube maintained autonomous pulsation rhythms, whereas other regions did not. Our mathematical model, based on FitzHugh-Nagumo equations applied to a one-dimensional alignment of cells, demonstrated that the difference between frequencies expressed by the two independent terminal pacemakers determined the direction of propagated waves. Changes in the statuses of terminal pacemakers between the excitatory and oscillatory modes as well as in their endogenous oscillation frequencies were sufficient to lead to heart reversals. These results suggest that the directions of pulsation waves in the Ciona heart reverse according to the changing rhythms independently expressed by remotely coupled terminal pacemakers.
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  • 文章类型: Journal Article
    高血压,与心脏病和过早死亡有关的主要健康问题,由于现有药物的副作用,促使人们寻找替代疗法。低营养海洋生物的可持续收获不仅增强了粮食安全,而且还提供了多种生物活性分子,包括肽。尽管只包含一小部分活性天然化合物,由于其大小,肽是药物开发的理想选择,稳定性,和抗降解。我们的评论评估了来自选定的海洋无脊椎动物门的肽和蛋白质的抗高血压特性,检查所使用的各种方法及其在制药中的应用,补充剂,和功能性食品。关于某些海洋无脊椎动物的抗高血压作用的研究相当多,然而,许多物种仍未被检查。一系列的评估方法,特别是ACE抑制,使结果的比较复杂化。体外和动物体内研究的优势表明需要更多的临床研究以将肽转化为药物。我们的发现为进一步探索这些有前途的海洋无脊椎动物奠定了基础,强调需要平衡科学发现和海洋保护以实现可持续资源利用。
    Hypertension, a major health concern linked to heart disease and premature mortality, has prompted a search for alternative treatments due to side effects of existing medications. Sustainable harvesting of low-trophic marine organisms not only enhances food security but also provides a variety of bioactive molecules, including peptides. Despite comprising only a fraction of active natural compounds, peptides are ideal for drug development due to their size, stability, and resistance to degradation. Our review evaluates the anti-hypertensive properties of peptides and proteins derived from selected marine invertebrate phyla, examining the various methodologies used and their application in pharmaceuticals, supplements, and functional food. A considerable body of research exists on the anti-hypertensive effects of certain marine invertebrates, yet many species remain unexamined. The array of assessments methods, particularly for ACE inhibition, complicates the comparison of results. The dominance of in vitro and animal in vivo studies indicates a need for more clinical research in order to transition peptides into pharmaceuticals. Our findings lay the groundwork for further exploration of these promising marine invertebrates, emphasizing the need to balance scientific discovery and marine conservation for sustainable resource use.
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  • 文章类型: Journal Article
    转录控制是体细胞组织中细胞命运决定的主要决定因素。相比之下,许多脊椎动物和无脊椎动物物种的早期种系命运规范广泛依赖于RNA水平的调节,施加于不对称遗传的母体供应,几乎没有合子转录。然而延迟,然而,从母体到合子的过渡已准备好完成种系中配子前计划的部署.这里,我们专注于被膜Ciona的早期种系规范,以研究合子基因组的激活。我们首先证明了一个特殊的细胞重塑事件排除了局部的后质Pem-1mRNA,它编码转录的一般抑制剂。随后,合子转录始于Pem-1阴性原始生殖细胞(PGCs),如延伸RNA聚合酶II的组织化学检测所示,和新生的Mef2成绩单。此外,我们发现JAK和MEK/BMPRI/GSK3信号之间的暂时拮抗作用,控制合子基因表达的开始,PGCs细胞重塑后。我们提出了Ciona种系中合子转录开始的两步模型,并讨论了在发育命运规范的背景下种质错位和重塑的重要性。
    Transcription control is a major determinant of cell fate decisions in somatic tissues. By contrast, early germline fate specification in numerous vertebrate and invertebrate species relies extensively on RNA-level regulation, exerted on asymmetrically inherited maternal supplies, with little-to-no zygotic transcription. However delayed, a maternal-to-zygotic transition is nevertheless poised to complete the deployment of pre-gametic programs in the germline. Here, we focus on early germline specification in the tunicate Ciona to study zygotic genome activation. We first demonstrate that a peculiar cellular remodeling event excludes localized postplasmic Pem-1 mRNA, which encodes the general inhibitor of transcription. Subsequently, zygotic transcription begins in Pem-1-negative primordial germ cells (PGCs), as revealed by histochemical detection of elongating RNA Polymerase II, and nascent Mef2 transcripts. In addition, we uncover a provisional antagonism between JAK and MEK/BMPRI/GSK3 signaling, which controls the onset of zygotic gene expression, following cellular remodeling of PGCs. We propose a 2-step model for the onset of zygotic transcription in the Ciona germline and discuss the significance of germ plasm dislocation and remodeling in the context of developmental fate specification.
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  • 文章类型: Journal Article
    Ascidians,以其颜色变化而闻名,宿主物种特异性微生物共生体群落。一些海鞘也可以转变为非过滤(静息)生理状态。最近的研究表明,微生物共生体群落可能因宿主的不同生理状态和颜色形态而异。殖民时代的海员,多斜视星座,在加勒比海展示了几种颜色变体,定期停止其过滤活动。为了研究P.constellatum中的颜色变化是否指示兄弟姐妹物种形成,我们对核糖体18SrRNA和线粒体细胞色素氧化酶亚基I基因的片段进行了测序。此外,我们对16SrRNA基因的片段进行了测序,以表征菌落中两种常见颜色形态(红色和绿色)的微生物群落,这两种形态是主动过滤(主动)或非过滤(静息)。对两个海鞘基因的系统发育分析产生了支持良好的单系进化枝,涵盖了P.constellatum的所有颜色变体。有趣的是,在绿色和红色变体的微生物群落之间没有观察到显着差异,表明该物种的颜色变异是种内变异的结果。然而,宿主的生理状态显著影响微生物群落结构。非过滤(静息)菌落具有较高的相对丰度的Kiloniella(α变形杆菌)和Fangia(γ变形杆菌),而过滤菌落容纳更多的Reugeria(α变形杆菌)和Endozoicomonas(γ变形杆菌)。这项研究表明,微生物共生体群落作为其宿主分类学状态的可靠指标,并受到宿主摄食条件的强烈影响。
    Ascidians, known for their color variation, host species-specific microbial symbiont communities. Some ascidians can also transition into a nonfiltering (resting) physiological state. Recent studies suggest that the microbial symbiont communities may vary across different physiological states and color morphs of the host. The colonial ascidian, Polyclinum constellatum, which exhibits several color morphs in the Caribbean Sea, periodically ceases its filtering activity. To investigate if color variation in P. constellatum is indicative of sibling speciation, we sequenced fragments of the ribosomal 18S rRNA and the mitochondrial cytochrome oxidase subunit I genes. Additionally, we sequenced a fragment of the 16S rRNA gene to characterize the microbial communities of two common color morphs (red and green) in colonies that were either actively filtering (active) or nonfiltering (resting). Phylogenetic analyses of both ascidian genes resulted in well-supported monophyletic clades encompassing all color variants of P. constellatum. Interestingly, no significant differences were observed among the microbial communities of the green and red morphs, suggesting that color variation in this species is a result of intraspecific variation. However, the host\'s physiological state significantly influenced the microbial community structure. Nonfiltering (resting) colonies hosted higher relative abundances of Kiloniella (Alphaproteobacteria) and Fangia (Gammaproteobacteria), while filtering colonies hosted more Reugeria (Alphaproteobacteria) and Endozoicomonas (Gammaproteobacteria). This study demonstrates that microbial symbiont communities serve as reliable indicators of the taxonomic state of their host and are strongly influenced by the host\'s feeding condition.
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  • 文章类型: Journal Article
    自19世纪末实验胚胎学诞生以来,就对海鞘胚胎进行了研究。它们代表了马赛克发展的教科书示例,其特征是快速发展,细胞很少,分裂模式和谱系不变。亚洲人属于被膜,脊椎动物姐妹组,他们的研究对于揭示脊椎动物的出现至关重要。重要的是,破译发育基因调控网络主要是在三个海鞘订单中的两个订单中进行的,丛枝菌和丛枝菌。为了推断海南人的祖先发展计划,因此,在第三海鞘秩序中进行分子胚胎学是必不可少的,Aplousobranchia.这里,我们提供了殖民地aplousbranchClavelinalepadiformis的基因组资源:一个从不同胚胎阶段产生的转录组,和带注释的基因组。该组件由184个重叠群组成,总计233.6Mb,N50为8.5Mb,L50为11。32,318个预测基因捕获了96.3%的BUSCO直系同源物。我们进一步表明,这些资源适用于在海鞘内的比较框架中研究发育基因的表达和调控。此外,它们将被证明对进化和生态研究有价值。
    Ascidian embryos have been studied since the birth of experimental embryology at the end of the 19th century. They represent textbook examples of mosaic development characterized by a fast development with very few cells and invariant cleavage patterns and lineages. Ascidians belong to tunicates, the vertebrate sister group, and their study is essential to shed light on the emergence of vertebrates. Importantly, deciphering developmental gene regulatory networks has been carried out mostly in two of the three ascidian orders, Phlebobranchia and Stolidobranchia. To infer ancestral developmental programs in ascidians, it is thus essential to carry out molecular embryology in the third ascidian order, the Aplousobranchia. Here, we present genomic resources for the colonial aplousobranch Clavelina lepadiformis: a transcriptome produced from various embryonic stages, and an annotated genome. The assembly consists of 184 contigs making a total of 233.6 Mb with a N50 of 8.5 Mb and a L50 of 11. The 32,318 predicted genes capture 96.3% of BUSCO orthologs. We further show that these resources are suitable to study developmental gene expression and regulation in a comparative framework within ascidians. Additionally, they will prove valuable for evolutionary and ecological studies.
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  • 文章类型: Journal Article
    热带海鞘Eudistomavannamei,巴西东北海岸特有,被认为是次级代谢产物的丰富来源,并拥有产生生物活性化合物的放线菌群。在这里,我们使用了组学方法来研究海鞘作为一个完整的生物,包括通过16SrRNA基因测序的微生物多样性和使用基于质谱的代谢组学的代谢物生产。基因测序分析显示,凡纳滨对虾的所有样本共享约50%的观察到的ASV,和Pseudomonadota(50.7%),Planctomycetota(9.58%),放线菌(10.34%),类细菌(12.05%)是最丰富的细菌门。串联质谱(MS/MS)数据容许剖析注解化合物,包括磷脂,氨基酸,和嘧啶生物碱,如星形孢菌素,被认为是微生物代谢物的众所周知的化学类别的成员。分离的细菌,主要属于链霉菌属和小单孢菌属,培养并用乙酸乙酯提取。细菌提取物的MS/MS剖析注解在海鞘组织中未检测到化合物,包括海藻素和二氢麦角胺,在宿主和分离的细菌之间产生约30%的重叠离子。本研究揭示了南美白对虾是微生物和化学多样性的丰富来源,此外,强调了整体系统全面调查的整体工具的重要性。
    The tropical ascidian Eudistoma vannamei, endemic to the northeastern coast of Brazil, is considered a prolific source of secondary metabolites and hosts Actinomycetota that produce bioactive compounds. Herein, we used an omics approach to study the ascidian as a holobiont, including the microbial diversity through 16S rRNA gene sequencing and metabolite production using mass spectrometry-based metabolomics. Gene sequencing analysis revealed all samples of E. vannamei shared about 50% of the observed ASVs, and Pseudomonadota (50.7%), Planctomycetota (9.58%), Actinomycetota (10.34%), Bacteroidota (12.05%) were the most abundant bacterial phyla. Analysis of tandem mass spectrometry (MS/MS) data allowed annotation of compounds, including phospholipids, amino acids, and pyrimidine alkaloids, such as staurosporine, a member of a well-known chemical class recognized as a microbial metabolite. Isolated bacteria, mainly belonging to Streptomyces and Micromonospora genera, were cultivated and extracted with ethyl acetate. MS/MS analysis of bacterial extracts allowed annotation of compounds not detected in the ascidian tissue, including marineosin and dihydroergotamine, yielding about 30% overlapped ions between host and isolated bacteria. This study reveals E. vannamei as a rich source of microbial and chemical diversity and, furthermore, highlights the importance of omic tools for a comprehensive investigation of holobiont systems.
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  • 文章类型: Journal Article
    假定在非脊椎动物氘代造口术中发现的单个极光激酶代表脊椎动物极光A/B/C的祖先。然而,被膜Oikopleuradioica,脊椎动物姐妹组的成员,具有在增殖细胞和生殖器官中表达的两种Aurora激酶(Aurora1和Aurora2)。以前,我们已经表明,随着减数分裂进行到中期I,极光激酶从组织中心重新定位到减数分裂细胞核,并在着丝粒区域富集。我们使用dsRNA干扰评估了它们在产卵减数分裂中的各自功能。我们发现Aurora1(Aur1)参与减数分裂纺锤体组织和染色体拥塞,可能是通过微管动力学的调节,而Aurora2(Aur2)对于染色体凝聚和减数分裂纺锤体组装至关重要。体外激酶测定显示Aur1和Aur2具有相当水平的激酶活性。利用酵母双杂交文库筛选,我们发现了Aur1的一些新的相互作用蛋白,包括c-Jun氨基末端激酶相互作用蛋白4,凝聚素加载器Scc2和线粒体载体同源物2,这表明Aur1可能具有改变的相互作用网络并参与调节O.dioica的微管马达和凝聚素复合物。
    A single Aurora kinase found in non-vertebrate deuterostomes is assumed to represent the ancestor of vertebrate Auroras A/B/C. However, the tunicate Oikopleura dioica, a member of the sister group to vertebrates, possesses two Aurora kinases (Aurora1 and Aurora2) that are expressed in proliferative cells and reproductive organs. Previously, we have shown that Aurora kinases relocate from organizing centers to meiotic nuclei and were enriched on centromeric regions as meiosis proceeds to metaphase I. Here, we assessed their respective functions in oogenic meiosis using dsRNA interferences. We found that Aurora1 (Aur1) was involved in meiotic spindle organization and chromosome congression, probably through the regulation of microtubule dynamics, whereas Aurora2 (Aur2) was crucial for chromosome condensation and meiotic spindle assembly. In vitro kinase assays showed that Aur1 and Aur2 had comparable levels of kinase activities. Using yeast two-hybrid library screening, we identified a few novel interaction proteins for Aur1, including c-Jun-amino-terminal kinase-interacting protein 4, cohesin loader Scc2, and mitochondrial carrier homolog 2, suggesting that Aur1 may have an altered interaction network and participate in the regulation of microtubule motors and cohesin complexes in O. dioica.
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  • 文章类型: Journal Article
    局部适应和表型可塑性在介导生物响应温度时空变化的能力中起关键作用。这两个过程通常共同作用,以产生急性温度耐受性的纬度或海拔。表型可塑性也受到局部适应,期望居住在更多可变环境中的种群应表现出更大的耐热性表型可塑性。在这里,我们研究了广泛的侵入性Botryllusschlosseri中耐热性的局部适应和发育可塑性的潜力。通过比较西北大西洋跨4.4°纬度的热梯度上的五个种群,我们证明,相对于较冷的种群,缅因湾以南的温暖种群表现出显著增加的(~0.2°C)后幼虫温度耐受性。我们还表明,B.schlosseri后幼虫具有该性状的高度发育可塑性,环境温度每升高1°C,将其中位生存温度(LT50)向上移动多达0.18°C。最后,我们发现种群的发育可塑性程度各不相同,经历更明显的短期温度变化的种群表现出更大的发育可塑性,表明发育可塑性的局部适应。通过比较种群跨空间和跨时间的耐热性,我们证明了地理和发育可塑性如何影响了B.schlosseri的耐热性。这些结果有助于我们了解物种如何在新环境中调整其热生理学,包括在入侵期间和日益新颖的气候条件下遇到的那些。
    Local adaptation and phenotypic plasticity play key roles in mediating organisms\' ability to respond to spatiotemporal variation in temperature. These two processes often act together to generate latitudinal or elevational clines in acute temperature tolerance. Phenotypic plasticity is also subject to local adaptation, with the expectation that populations inhabiting more variable environments should exhibit greater phenotypic plasticity of thermal tolerance. Here we examine the potential for local adaptation and developmental plasticity of thermal tolerance in the widespread invasive tunicate Botryllus schlosseri. By comparing five populations across a thermal gradient spanning 4.4° of latitude in the northwest Atlantic, we demonstrate that warmer populations south of the Gulf of Maine exhibit significantly increased (∼0.2 °C) post-larval temperature tolerance relative to the colder populations within it. We also show that B. schlosseri post-larvae possess a high degree of developmental plasticity for this trait, shifting their median temperature of survival (LT50) upwards by as much as 0.18 °C per 1 °C increase in environmental temperature. Lastly, we found that populations vary in their degrees of developmental plasticity, with populations that experience more pronounced short-term temperature variability exhibiting greater developmental plasticity, suggesting the local adaptation of developmental plasticity. By comparing the thermal tolerance of populations across space and through time, we demonstrate how geography and developmental plasticity have shaped thermal tolerance in B. schlosseri. These results help inform our understanding of how species are able to adjust their thermal physiology in new environments, including those encountered during invasion and under increasingly novel climate conditions.
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  • 文章类型: Letter
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