Taxonomic distinctness

分类差异
  • 文章类型: Journal Article
    原生动物通过将海洋生态系统中的物质和能量从低热带水平转移到高热带水平,在微生物食物网的功能中起着重要作用。为了评估高温对海洋生态系统的影响,外围原生动物群落被用作测试微生物区系,并在温度受控的循环系统中以22(对照)的连续温度梯度孵育,25、28、31和34℃。结果表明:(1)试验微生物区系在物种组成和群落结构上都发生了变化;(2)平均分类差异呈明显下降趋势,(3)随着水温的升高,分类学差异的变化显着增加;(4)当温度升高12°C时,群落格局显着偏离了预期。这些结果表明,原生动物可以用作海洋生态系统中全球变暖的有用生物指示剂。
    Protozoan fauna is playing an important role in the functioning of microbial food webs by transferring the flux of material and energy from low to high tropic levels in marine ecosystems. To assess effects of elevated temperature on the marine ecosystem, periphytic protozoan communities were used as the test microbial fauna, and were incubated in a temperature-controlled circulation system in a successive temperature gradient of 22 (control), 25, 28, 31 and 34 °C. The results showed that: (1) the test microbial fauna was shifted in both species composition and community structure; (2) the average taxonomic distinctness represented a clear decreasing trend, (3) while the variation in taxonomic distinctness significantly increased with increase of water temperature; and (4) the community pattern was significantly departed from an expectation when temperature increased by 12 °C. These results suggested that Protozoa may be used as a useful bioindicator of global warming in marine ecosystems.
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  • 文章类型: Journal Article
    栖息地丧失是预计气候变化对地中海森林生态系统的潜在长期影响。这里,我们调查了接近自然的造林方法的有效性,以保护西西里岛(意大利)的老橡树林斑块并促进再生动态。研究区域,虽然小,它的独特之处在于它的孤立,位置和环境特征。我们进行了一项前后对照影响(BACI)研究,以分析不同分类组(维管植物和鸟类)对造林处理的反应(选择间伐,不变薄),并确定接近自然的造林做法是否可能导致被调查社区的重大变化。具体来说,我们通过物种多样性和分类学差异指数评估了(1)维管植物的反应,以及(2)鸟类的多样性,丰富和森林专业化。初步结果表明,谨慎的接近自然的造林实践可以通过模仿自然间隙动态来有助于维持古老的森林斑块并促进橡树幼苗的出苗,而不会对生物多样性产生短期不利影响。尽管必须长期重复监测,将分类关系信息纳入多样性度量的多分类单元方法和指数被证明是解释生物群落结构和动态的有价值的工具。
    Habitat loss is a potential long-term effect of projected climate change for Mediterranean forest ecosystems. Here, we investigated the effectiveness of a close-to-nature silvicultural practice to conserve an old-growth white oak forest patch in Sicily (Italy) and promote regeneration dynamics. The study area, although small, is distinctive for its isolation, position and environmental characteristics. We conducted a Before-After Control-Impact (BACI) study to analyse the responses of different taxonomic groups (vascular plants and birds) to silvicultural treatments (selection thinning, no thinning), and to determine whether close-to-nature silviculture practices may cause significant shifts in the investigated communities. Specifically, we assessed the responses of (1) vascular plants by means of species diversity and taxonomic distinctness indices and (2) birds in terms of diversity, abundance and forest specialisation. Preliminary results suggest that cautious close-to-nature silviculture practice could-by mimicking natural gap dynamics-contribute to maintaining old-growth forest patches and promote oak seedling emergence without short-term detrimental impacts on biodiversity. Although the monitoring has to be repeated over the long-term, the multi-taxon approach and indices incorporating information on taxonomic relationships into diversity measures were demonstrated to be valuable tools for interpreting biotic community structure and dynamics.
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  • 文章类型: Journal Article
    熔岩洞穴,管,夏威夷的喷气孔,我呈现出一系列火山,来自不同熔岩流的寡营养环境和宿主出乎意料的高水平细菌多样性。这些特征为研究构造火山生态系统中细菌群落多样性和集合的生态驱动因素提供了机会,更稳定的熔岩管环境,更多的变化和极端的年轻人的条件,地热活性洞穴和喷气孔。使用基于16SrRNA扩增子的测序方法,我们调查了系统发育的独特性和多样性,并通过共现网络在70个来自熔岩管的样品中确定了微生物相互作用和聚生体,地热熔岩洞穴,还有夏威夷岛上的喷气孔.我们的数据表明,熔岩洞穴和地热遗址拥有独特的微生物群落,洞穴或地点之间几乎没有重叠。我们还发现,较旧的熔岩管(500-800岁)比地热活跃或较年轻(<400岁)的地点具有更大的系统发育多样性(Faith'sPD)。地热活性位点比熔岩管具有更多的相互作用和复杂性。平均系统发育差异,衡量一个社区的系统发育相关性,如果社区是随机构建的,比预期的要高。这表明夏威夷火山环境的细菌群落在系统发育上过度分散,竞争性排斥是构建这些群落的主要驱动力。这得到了网络分析的支持,该分析发现,类群(类水平)与更远的相关生物共同发生,而不是近亲,特别是在地热场所。网络“枢纽”(具有潜在较高生态重要性的分类单元)不是地热站点或熔岩管中最丰富的分类单元,被确定为未知的门科或属,氯氟菌和酸杆菌。这些结果突出了需要进一步研究微生物在洞穴中的生态作用,通过针对性的培养方法,宏基因组学,和长读序列技术。
    Lava caves, tubes, and fumaroles in Hawai\'i present a range of volcanic, oligotrophic environments from different lava flows and host unexpectedly high levels of bacterial diversity. These features provide an opportunity to study the ecological drivers that structure bacterial community diversity and assemblies in volcanic ecosystems and compare the older, more stable environments of lava tubes, to the more variable and extreme conditions of younger, geothermally active caves and fumaroles. Using 16S rRNA amplicon-based sequencing methods, we investigated the phylogenetic distinctness and diversity and identified microbial interactions and consortia through co-occurrence networks in 70 samples from lava tubes, geothermal lava caves, and fumaroles on the island of Hawai\'i. Our data illustrate that lava caves and geothermal sites harbor unique microbial communities, with very little overlap between caves or sites. We also found that older lava tubes (500-800 yrs old) hosted greater phylogenetic diversity (Faith\'s PD) than sites that were either geothermally active or younger (<400 yrs old). Geothermally active sites had a greater number of interactions and complexity than lava tubes. Average phylogenetic distinctness, a measure of the phylogenetic relatedness of a community, was higher than would be expected if communities were structured at random. This suggests that bacterial communities of Hawaiian volcanic environments are phylogenetically over-dispersed and that competitive exclusion is the main driver in structuring these communities. This was supported by network analyses that found that taxa (Class level) co-occurred with more distantly related organisms than close relatives, particularly in geothermal sites. Network \"hubs\" (taxa of potentially higher ecological importance) were not the most abundant taxa in either geothermal sites or lava tubes and were identified as unknown families or genera of the phyla, Chloroflexi and Acidobacteria. These results highlight the need for further study on the ecological role of microbes in caves through targeted culturing methods, metagenomics, and long-read sequence technologies.
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  • 文章类型: Journal Article
    Neuroptera是一种昆虫,具有中等物种数量多样性,但家族间形态多样性很高,作为捕食者具有重要的生态作用。然而,很少有研究专注于描述物种多样性沿环境梯度的变化。我们评估了墨西哥南部塔卡纳火山的Neuronptera群落中物种的α和β多样性以及较高分类群的变化。通过系统的年度采样研究了五个不同海拔的地点。对α的分类和系统发育多样性进行了分析,以及β多样性及其组成部分,物种周转和嵌套。α多样性有两个趋势:(1)随着海拔的增加,标准化丰富度和分类学差异降低,(2)增加了中等海拔的估计丰富度和物种多样性。物种的最高周转值,以及超特定分类单元,记录在海拔较低的地点。最高的总β多样性值记录在海拔3000米以上,而在600至2000m之间的地点观察到的物种和超特定分类群数量最多,在3000m以上明显减少。植被类型和环境条件可能会影响多样性向高海拔地区的减少,这可以解释神经翅目物种在梯度内特定位点的生态位特化。这些结果突出了研究环境因素及其对海拔梯度物种组成的影响的必要性。
    Neuroptera is an order of insects with a moderate diversity of species numbers yet a high between-family morphological diversity, which has a significant ecological role as a predator. However, there are few studies focused on describing changes in species diversity along environmental gradients. We evaluated changes in the alpha and beta diversity of species and the higher taxa in Neuroptera communities in the Tacaná Volcano in southern Mexico. Five sites each at different altitudes were studied through systematic annual sampling. The taxonomic and phylogenetic alpha diversity were analyzed, as well as the beta diversity and its components, species turnover and nestedness. The alpha diversity had two trends: (1) decreased standardized richness and taxonomic distinctness with increasing altitude, and (2) increased estimated richness and species diversity at intermediate altitudes. The highest turnover values for species, as well as for supra-specific taxa, were recorded at sites with lower altitudes. The highest total beta diversity value was recorded at elevations above 3000 m, whereas the highest number of species and supra-specific taxa were observed at sites between 600 and 2000 m, with an evident decrease above 3000 m. The type of vegetation and environmental conditions may be influencing the decrease in diversity toward higher elevations, which could explain the niche specialization of Neuroptera species to particular sites within the gradient. These results highlight the need to study the environmental factors and their effects on species composition along an elevation gradient.
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  • 文章类型: Journal Article
    雨水管理池,它们的建造是为了保留交通中多余的径流和污染物,在高度改良地区的淡水生物多样性中起着重要作用。然而,它们在农业和半自然景观中的作用在很大程度上仍未被探索。在这项研究中,我们使用Odonata作为生物指示剂,在农业和半自然景观中比较了一组公路雨水池和周围的池塘,以检查雨水池作为生物多样性避难所的程度。我们分析了环境参数的差异和丰富度,Compositions,以及雨水和周围池塘的冠状群落的保护价值。我们还研究了控制两种池塘类型群落差异的因素。雨水池较小,较少的富营养化,少被树木遮蔽,少放鱼,与其他水体的连接比周围的池塘少。然而,它们具有较高的植物多样性和pH值,并且植被茂密。与周围的池塘相比,雨水池具有较高的Odonata丰富度和β多样性,但它们的分类学差异明显较低。因此,雨水池拥有更多的可变群落,但它们的组合在分类学上相似。仅在雨水池塘中鉴定了指示物种。此外,雨水池拥有更多物种,具有更高的保护价值。影响雨水与周围池塘之间差异的最重要因素是营养状态,相对树着色,和鱼类放养强度。随着他们的增加,丰富度和稀有性下降。我们的结果强调了雨水池通过提供周围农业景观特有的特定栖息地条件来增强城市地区以外的生物多样性的潜力。此外,我们建议可用于增强其生物多样性保护功能的管理实践。
    Stormwater management ponds, which are constructed to retain excess runoff and pollutants from traffic, play an important role in the freshwater biodiversity in highly modified areas. However, their roles in agricultural and semi-natural landscapes remain largely unexplored. In this study, we used Odonata as a bioindicator to compare a set of highway stormwater ponds and surrounding ponds within an agricultural and semi-natural landscape to examine the extent to which stormwater ponds act as biodiversity refuges. We analyzed the differences in environmental parameters and the richness, compositions, and conservation values of the odonate communities of stormwater and surrounding ponds. We also examined the factors controlling the differences in the communities of both pond types. The stormwater ponds were smaller, less eutrophicated, less shaded by trees, less stocked with fish, and less connected with other waterbodies than the surrounding ponds. However, they had a higher plant diversity and pH values and were more densely overgrown with vegetation. Compared with surrounding ponds, stormwater ponds had a higher Odonata richness and β-diversity, but their taxonomic distinctness was significantly lower. Therefore, stormwater ponds hosted more variable communities but their assemblages were taxonomically similar. Indicator species were only identified in stormwater ponds. Furthermore, stormwater ponds harbored more species with higher conservation values. The most important factors affecting the differences between stormwater and surrounding ponds were the trophic state, relative tree shading, and fish stocking intensity. With their increase, the richness and rarity decreased. Our results highlight the potential of stormwater ponds to enhance the biodiversity outside urban areas by providing specific habitat conditions that are unique to the surrounding agricultural landscape. In addition, we suggest management practices that can be used to enhance their biodiversity conservation function.
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  • 文章类型: Journal Article
    原生动物对呋喃唑酮(NFZ)的几种可观察到的反应和敏感性,NFZ对原生动物的毒性作用可以作为水生环境NFZ污染的预警信号。为了评估NFZ诱导的毒性动力学,使用显微镜载玻片收集原生动物样品,并暴露于五种浓度的NFZ:0、1、2、4和8mgml-1。在所有浓度之间观察到物种组成和毒性动力学模式的实质性差异。简而言之,外周整倍体和胸膜口在每个浓度水平上最普遍,而在所有治疗中,反类固醇较不占优势。多变量分析显示,五种处理中测试生物的分类模式存在显着差异(P<0.05)。此外,观察到原生动物群落与预期分类宽度的显着偏差以剂量依赖性方式发生。基于这些发现,建议将原生动物外周体作为生物指标来评估NFZ在海洋环境中的生态毒性。
    With several observable responses and sensitivity of protozoans to nitrofurazone (NFZ), the toxic effects of NFZ on protozoans can be an early warning signal of NFZ contamination in the aquatic environment. To evaluate the toxic dynamics induced by NFZ, protozoan samples were collected using microscopy glass slides and exposed to the five concentrations of NFZ: 0, 1, 2, 4, and 8 mg ml-1. Substantial differences in the species composition and toxic-dynamics patterns were observed among all concentrations. Briefly, periphytic euplotids and pleurostomatids were the most prevalent at each concentration level, while dysteriids were less dominant among all treatments. Multivariate analysis revealed significant (P < 0.05) differences in the taxonomic patterns of the test organisms among the five treatments. Furthermore, significant deviation of protozoan communities from the expected taxonomic breadth was observed to occur in a dose-dependent manner. Based on these findings, it is suggested that protozoan periphytons could be used as bioindicators to assess the ecotoxicity of NFZ in the marine environment.
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  • 文章类型: Journal Article
    关于丰富模式的研究,圣地亚哥多明古洛的Odonata的多样性和丰度,瓦哈卡在这里介绍。共有六个家族的1601个标本,通过每月5天的采样获得26属50种。Libellulidae是最多样化的家族(21种),其次是Coenagrionidae(19),Gomphidae(4)和Calopterygidae(3)。TheLestidae,盘科和七科种类较少,每个物种只有一个。Argia是最特殊的属,有11种,其次是Enallagma,Hetaerina,红藻和巨藻各有三种,以及Phyllogomphoides,Brechmorhoga,Dythemis,红斑和Orthemis各有两种。其余17个属各有一个物种。ArgiapipilaCalvert,1907年和Selys的LeptobasisvacillansHagen,1877年是瓦哈卡州的第一次记录。我们还分析了SantiagoDominguilloOdonata组合的分类学和系统发育差异的时间模式:全年的Shannon多样性值为21.07有效物种,而辛普森的多样性是13.17。总的来说,每月的系统发育差异高于预期的分类学差异,和较小的平均分类清晰度。每月的多样性,均匀度和分类差异与月降水量值呈显着正相关(从中等到强)。对我们结果的分析,然而,表明降雨量的增加不仅影响物种的时间多样性,以及构成这些时间组合的超特定分类群的身份,即时间系统发育差异增加。
    A study on the patterns of richness, diversity and abundance of the Odonata from Santiago Dominguillo, Oaxaca is presented here. A total of 1601 specimens from six families, 26 genera and 50 species were obtained through monthly samplings of five days each. Libellulidae was the most diverse family (21 species), followed by Coenagrionidae (19), Gomphidae (4) and Calopterygidae (3). The Lestidae, Platystictidae and Aeshnidae families were the less diverse, with only one species each. Argia was the most speciose genus with 11 species, followed by Enallagma, Hetaerina, Erythrodiplax and Macrothemis with three species each and Phyllogomphoides, Brechmorhoga, Dythemis, Erythemis and Orthemis with two species each. The remaining 17 genera had one species each. Argia pipila Calvert, 1907 and Leptobasis vacillans Hagen in Selys, 1877 were recorded for the first time for the state of Oaxaca. We also analysed the temporal patterns of taxonomic and phylogenetic divergence for the Santiago Dominguillo Odonata assemblage: the Shannon diversity value throughout the year was 21.07 effective species, while the Simpson diversity was 13.17. In general, the monthly phylogenetic divergence was higher than expected for taxonomic distinctness, and lesser for average taxonomic distinctness. Monthly diversity, evenness and taxonomic divergence showed significant positive correlations (from moderate to strong) with monthly precipitation values. The analysis of our results, however, indicates that an increase in rainfall not only influences the temporal diversity of species, but also the identity of supraspecific taxa that constitute those temporal assemblages, i.e. there is an increase in temporal phylogenetic divergence.
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  • 文章类型: Journal Article
    Parasites are strictly associated with their hosts and present a great diversity of life histories, often resulting in different diversity patterns than those observed in free-living species. However, ecological approaches have detected that, in some cases, mammal-associated helminths respond similarly to non-parasitic species in terms of diversity patterns. Using 2200 recorded interactions, we analysed the diversity patterns of helminths (Acanthocephala, Nematoda and Platyhelminthes) harbored by humans, wild and domestic mammals of Mexico, depending on latitude, host body mass and trophic guild (carnivore, herbivore, insectivore, omnivore), considering helminth richness and average taxonomic distinctness, and host phylogenetic diversity and phylogenetic clustering. Latitude was positively correlated with the average taxonomic distinctness encompassing the three parasite phyla and nematodes. Northern latitudes had less taxonomically related parasite assemblages. Host body mass had a significant negative relationship with the average taxonomic distinctness of acanthocephalans and the richness of helminths associated to wild hosts. The omnivore hosts had greater parasite richness, while insectivores had a less taxonomically related parasite assemblage and herbivores had a more heterogeneous parasite assemblage. Our results highlight the importance of incorporating different dimensions of diversity, such as average taxonomic distinctness and to consider the composition of parasite assemblages to better understand their diversity patterns.
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  • 文章类型: Comparative Study
    在这项研究中,比较了从南极和南极地区获得的鱼类中体内寄生虫的生物多样性和组成。夏季从南极洲(乔治王岛)和南太平洋海岸(麦哲伦海峡和阿尔米兰特蒙特湾)收集了几条鱼。该数据库补充了两个地区已发布的有关鱼类体内寄生虫群落的信息,具有鱼样本量n≥15的标本。因此,这项研究分析了31种鱼类,共有79种寄生虫。计算了每种鱼类的寄生虫群落的多样性指数。然后将它们在南极和亚南极地区进行比较。还分析了寄生虫物种组成和宿主特异性(作为寄生虫物种使用的鱼类数量),并在区域之间进行了比较。南极鱼类的多样性指数和寄生虫的丰度明显高于南极鱼类。两个地区的鱼类之间几乎没有寄生虫物种(7.6%),显示寄生虫成分的显着差异。南极寄生虫的宿主特异性不如南极寄生虫,这使得几种寄生虫在鱼中共存。南极鱼中的高寄生虫丰度可能引发某些寄生谱系的同胞物种形成或新资源的开发,导致比南极环境中更多的寄生虫物种。南极寄生虫的高丰度意味着与南极下寄生虫不同的传播方式和传播速度。此外,南极使用的替代鱼类宿主比亚南极寄生虫更多。这完全表明,南极和亚南极系统之间的宿主-寄生虫相互作用动力学存在显着差异。
    The biodiversity and composition of endoparasites in fish obtained from the Antarctic and subantarctic zones are compared in this study. Several fish were collected in the summer from Antarctica (King George Island) and the Southern Pacific coast (Strait of Magellan and Almirante Montt Gulf). This database was complemented with published information on fish endoparasite communities from both zones, with specimens of fish sample size n ≥ 15. Thus, 31 fish species were analysed in this study, which altogether had 79 parasite species. Diversity indices were calculated for the parasite community of each fish species. Then they were compared between the Antarctic and subantarctic zones. Parasite species composition and host specificity (as the number of fish species used by a parasite species) were also analysed and compared between zones. The diversity indices and the abundance of parasites were significantly higher in the Antarctic than the subantarctic fish. Few parasite species (7.6%) were shared between fish from both zones, showing significant differences in parasite composition. Antarctic parasites were less host-specific than subantarctic parasites, which allowed the coexistence of several parasite species in the fish. The high parasite abundance in Antarctic fish could trigger sympatric speciation in certain parasitic lineages or the exploitation of new resources, resulting in more parasite species than those in subantarctic environments. The high abundance of Antarctic parasites implies different methods and rates of transmission than those of subantarctic parasites. In addition, more alternative fish hosts were used by the Antarctic than subantarctic parasites. This altogether indicates that host-parasite interaction dynamics significantly differ between the Antarctic and subantarctic systems.
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  • 文章类型: Journal Article
    Marine fish species checklists from six Chinese coastal waters were combined for the analysis of taxonomic diversity. The Genus-Family index (G-F index) ranged between 0.39 and 0.84, which generally indicated a decreasing trend with increasing latitude, with the exception of the southernmost area. Average taxonomic distinctness showed a slight increasing trend from northern to central study areas, but whether the taxonomic distinctness indices represent a latitudinal gradient of biodiversity requires further study. The multivariate analysis revealed a distinct latitudinal variation in fish assemblages. These results indicate that species checklist data are helpful in understanding the diversity distribution of fish species in the coastal zone. The potential of a species inventory should be exploited to fully understand biodiversity.
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