Structure–activity relationships (SARs)

构效关系 (SARs)
  • 文章类型: Journal Article
    背景:应用基于GPCR(G蛋白偶联受体)靶标的方法来鉴定节肢动物特异性蜱激肽受体的拮抗剂。当通过RNA干扰使激肽受体沉默时,预计这些小分子会再现在微型动物和雌性动物中观察到的有害表型效应。微小根皮phalus,南方牛蜱,牛发烧蜱,或亚洲蓝蜱,是导致致命的牛babesiosis和无形体病的病原微生物的媒介。全球tick种群对杀螨剂的广泛抗性强调,探索有效控制tick的新目标势在必行。
    结果:使用表达蜱激肽受体的CHO-K1细胞系,在“双重添加”钙荧光测定法中筛选了先前鉴定的蜱激肽拮抗剂的53种结构类似物。七个分子被验证为非细胞毒性拮抗剂,其中四个是部分的(SACC-0428764、SACC-0428780、SACC-0428800和SACC-0428803),三个是完全拮抗剂(SACC-0428799、SACC-0428801和SACC-0428815)。这些拮抗剂中的四种(SACC-0428764,SACC-0428780,SACC-0428799和SACC-0428815)也抑制了由肌力激肽激动剂类似物1728诱导的蜱中肠收缩,证实了它们的拮抗生物活性。在重组人神经激肽(NK)受体上测试了小分子,与无脊椎动物激肽受体最相似的一种。大多数分子是NK1受体的抑制剂,除了SACC-0412066,一种先前鉴定的蜱激肽受体拮抗剂,其仅在测试的最高浓度(25μm)下抑制NK1受体。没有一种分子抑制NK3人受体。
    结论:通过这种方法鉴定的分子可能是研究蜱激肽信号系统和中肠生理学的有用探针。©2024作者(S)。害虫管理科学由JohnWiley&SonsLtd代表化学工业学会出版。
    BACKGROUND: A GPCR (G protein-coupled receptor) target-based approach was applied to identify antagonists of the arthropod-specific tick kinin receptor. These small molecules were expected to reproduce the detrimental phenotypic effects that had been observed in Rhipicephalus microplus females when the kinin receptor was silenced by RNA interference. Rhipicephalus microplus, the southern cattle tick, cattle fever tick, or Asian blue tick, is the vector of pathogenic microorganisms causing the deadly bovine babesiosis and anaplasmosis. The widespread resistance to acaricides in tick populations worldwide emphasizes that exploring novel targets for effective tick control is imperative.
    RESULTS: Fifty-three structural analogs of previously identified tick kinin antagonists were screened in a \'dual-addition\' calcium fluorescence assay using a CHO-K1 cell line expressing the tick kinin receptor. Seven molecules were validated as non-cytotoxic antagonists, four of which were partial (SACC-0428764, SACC-0428780, SACC-0428800, and SACC-0428803), and three were full antagonists (SACC-0428799, SACC-0428801, and SACC-0428815). Four of these antagonists (SACC-0428764, SACC-0428780, SACC-0428799, and SACC-0428815) also inhibited the tick midgut contractions induced by the myotropic kinin agonist analog 1728, verifying their antagonistic bioactivity. The small molecules were tested on recombinant human neurokinin (NK) receptors, the one most similar to the invertebrate kinin receptors. Most molecules were inhibitors of the NK1 receptor, except SACC-0412066, a previously identified tick kinin receptor antagonist, which inhibited the NK1 receptor only at the highest concentration tested (25 μm). None of the molecules inhibited the NK3 human receptor.
    CONCLUSIONS: Molecules identified through this approach could be useful probes for studying the tick kinin signaling system and midgut physiology. © 2024 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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  • 文章类型: Journal Article
    由于抗生素的过度使用,细菌耐药性已显著增加,成为全球性问题和对人类健康的重大威胁。幸运的是,近年来,通过对传统抗生素的改进和具有新机制的抗生素的发现,已经开发了各种新的抗生素,目的是解决传统抗生素功效的降低。本手稿回顾了在过去20年中被批准上市的抗生素,重点是抗菌性能,机制,结构-活动关系(SARs),以及这些抗生素的临床安全性。此外,目前的不足,改进的机会,和抗生素的前景进行了深入的讨论,为设计和开发更安全,更有效的抗生素提供了新的见解。
    Due to the overuse of antibiotics, bacterial resistance has markedly increased to become a global problem and a major threat to human health. Fortunately, in recent years, various new antibiotics have been developed through both improvements to traditional antibiotics and the discovery of antibiotics with novel mechanisms with the aim of addressing the decrease in the efficacy of traditional antibiotics. This manuscript reviews the antibiotics that have been approved for marketing in the last 20 years with an emphasis on the antibacterial properties, mechanisms, structure-activity relationships (SARs), and clinical safety of these antibiotics. Furthermore, the current deficiencies, opportunities for improvement, and prospects of antibiotics are thoroughly discussed to provide new insights for the design and development of safer and more potent antibiotics.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    sABSTRACTTANK结合激酶1(TBK1),抑制剂κB激酶(IKKs)家族的非规范成员,在协调先天免疫的信号通路中起着至关重要的作用,参与神经炎症的过程,自噬,和肿瘤发生。在目前的研究中,基于合理的药物设计策略,我们发现了一系列1H-吡唑并[3,4-b]吡啶衍生物作为有效的TBK1抑制剂,并解剖了结构-活性关系(SARs)。通过几轮优化,化合物15y作为TBK1的有效抑制剂突出,IC50值为0.2nM,并且还显示出良好的选择性。TBK1下游基因的mRNA检测显示,化合物15y在刺激的THP-1和RAW264.7细胞中有效抑制TBK1下游IFN信号传导。同时,化合物15y对A172、U87MG、A375、A2058和Panc0504细胞系。一起,目前的结果提供了一种有前途的TBK1抑制剂15y作为免疫和癌症相关药物发现的先导化合物。
    sABSTRACTTANK-binding kinase 1 (TBK1), a noncanonical member of the inhibitor-kappaB kinases (IKKs) family, plays a vital role in coordinating the signalling pathways of innate immunity, involving in the process of neuroinflammation, autophagy, and oncogenesis. In current study, based on rational drug design strategy, we discovered a series of 1H-pyrazolo[3,4-b]pyridine derivatives as potent TBK1 inhibitors and dissected the structure-activity relationships (SARs). Through the several rounds of optimisation, compound 15y stood out as a potent inhibitor on TBK1 with an IC50 value of 0.2 nM and also displayed good selectivity. The mRNA detection of TBK1 downstream genes showed that compound 15y effectively inhibited TBK1 downstream IFN signalling in stimulated THP-1 and RAW264.7 cells. Meanwhile, compound 15y exhibited a micromolar antiproliferation effect on A172, U87MG, A375, A2058, and Panc0504 cell lines. Together, current results provided a promising TBK1 inhibitor 15y as lead compound for immune- and cancer-related drug discovery.
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  • 文章类型: Journal Article
    酶的结构及其与配体的复合物的阐明继续为开发针对许多疾病的药物提供了宝贵的见解,包括细菌感染。在世界卫生组织(WHO)宣布结核病(TB)为全球卫生紧急情况近三十年后,结核分枝杆菌(Mtb)继续夺去数百万人的生命,仍然是全球主要的死亡原因之一。在过去的几年里,已经做出了一些努力来缩短和改善治疗结果,并克服不断增加的阻力现象。酶-配体复合物的结构阐明是识别热点的基础,定义可能的交互站点,并制定开发具有高亲和力的优化分子的策略。这篇综述提供了有关传统和新兴分枝杆菌酶靶标的最新结构信息的关键和全面概述。这里讨论了二十多种酶的选择,特别强调分析它们的结合位点,其抑制剂的构效关系(SARs)的定义,以及对它们主要分子间相互作用的研究。这项工作证实了结构研究的潜力,证实它们在未来抗分枝杆菌药物发现和开发工作中的相关性。
    The elucidation of the structure of enzymes and their complexes with ligands continues to provide invaluable insights for the development of drugs against many diseases, including bacterial infections. After nearly three decades since the World Health Organization\'s (WHO) declaration of tuberculosis (TB) as a global health emergency, Mycobacterium tuberculosis (Mtb) continues to claim millions of lives, remaining among the leading causes of death worldwide. In the last years, several efforts have been devoted to shortening and improving treatment outcomes, and to overcoming the increasing resistance phenomenon. The structural elucidation of enzyme-ligand complexes is fundamental to identify hot-spots, define possible interaction sites, and elaborate strategies to develop optimized molecules with high affinity. This review offers a critical and comprehensive overview of the most recent structural information on traditional and emerging mycobacterial enzymatic targets. A selection of more than twenty enzymes is here discussed, with a special emphasis on the analysis of their binding sites, the definition of the structure-activity relationships (SARs) of their inhibitors, and the study of their main intermolecular interactions. This work corroborates the potential of structural studies, substantiating their relevance in future anti-mycobacterial drug discovery and development efforts.
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  • 文章类型: Journal Article
    组蛋白赖氨酸特异性脱甲基酶1(LSD1)已被认为是表观遗传学翻译后过程中的重要调节剂。LSD1的失调与各种癌症的发展有关。在这里,我们报道了发现化合物8a(IC50=3.93μmol/L)和进一步的药物化学努力,导致化合物15u的产生(IC50=49nmol/L,且Ki=16nmol/L),与H3K4me2可逆地和竞争性地抑制LSD1,并且相对于MAO-A/B对LSD1具有选择性。进行对接研究以合理化化合物15u的效力。化合物15u还对四种白血病细胞系(OCL-AML3,K562,THP-1和U937)以及淋巴瘤细胞系Raji显示出强的抗增殖活性,IC50值为1.79、1.30、0.45、1.22和1.40μmol/L。分别。在THP-1细胞系中,15u显著抑制集落形成并引起显著的形态变化。化合物15u诱导THP-1细胞中CD86和CD11b的表达,证实其细胞活性和诱导分化的能力。研究结果进一步表明,靶向LSD1是一种有前途的AML治疗策略。三唑-稠合嘧啶衍生物是开发LSD1/KDM1A抑制剂的新支架。
    Histone lysine specific demethylase 1 (LSD1) has been recognized as an important modulator in post-translational process in epigenetics. Dysregulation of LSD1 has been implicated in the development of various cancers. Herein, we report the discovery of the hit compound 8a (IC50 = 3.93 μmol/L) and further medicinal chemistry efforts, leading to the generation of compound 15u (IC50 = 49 nmol/L, and K i = 16 nmol/L), which inhibited LSD1 reversibly and competitively with H3K4me2, and was selective to LSD1 over MAO-A/B. Docking studies were performed to rationalize the potency of compound 15u. Compound 15u also showed strong antiproliferative activity against four leukemia cell lines (OCL-AML3, K562, THP-1 and U937) as well as the lymphoma cell line Raji with the IC50 values of 1.79, 1.30, 0.45, 1.22 and 1.40 μmol/L, respectively. In THP-1 cell line, 15u significantly inhibited colony formation and caused remarkable morphological changes. Compound 15u induced expression of CD86 and CD11b in THP-1 cells, confirming its cellular activity and ability of inducing differentiation. The findings further indicate that targeting LSD1 is a promising strategy for AML treatment, the triazole-fused pyrimidine derivatives are new scaffolds for the development of LSD1/KDM1A inhibitors.
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  • 文章类型: Journal Article
    随着化合物数量和生物活性数据量的快速增长,需要先进的计算方法来大规模研究结构-活性关系(SAR)。在这里,描述了SAR矩阵(SARM)方法,该方法旨在系统地从大型数据库中提取生物活性化合物之间的结构关系,探索结构-活动关系,导航多目标活动空间,这是化学基因组学的核心任务之一。此外,SARM方法旨在可视化结构和结构-活动关系,这对于使这些信息以直观的形式用于实际应用通常至关重要。
    As the number of compounds and the volume of bioactivity data rapidly grow, advanced computational methods are required to study structure-activity relationships (SARs) on a large scale. Herein, the SAR matrix (SARM) methodology is described that was designed to systematically extract structural relationships between bioactive compounds from large databases, explore structure-activity relationships, and navigate multitarget activity spaces, which is one of the core tasks in chemogenomics. In addition, the SARM approach was designed to visualize structural and structure-activity relationships, which is often of critical importance for making this information available in an intuitive form for practical applications.
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  • 文章类型: Journal Article
    已证明天然产物vindoline可以增强MIN6细胞中葡萄糖刺激的胰岛素分泌(GSIS),EC50值为50.2μM。为了改进活动,在MIN6细胞中合成并评估了一系列vindoline衍生物。化合物4,8,17和24显示出约4.5倍的有效刺激胰岛素分泌能力(EC50:10.4,14.2,11.0和12.7μM,分别)比维多林。
    It is demonstrated that natural product vindoline can enhance the glucose-stimulated insulin secretion (GSIS) in MIN6 cells with the EC50 value of 50.2μM. In order to improve the activities, a series of vindoline derivatives are synthesized and evaluated in MIN6 cells. Compounds 4, 8, 17 and 24 show about 4.5 times more effective stimulation insulin secretion ability (EC50: 10.4, 14.2, 11.0 and 12.7μM, respectively) than vindoline.
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  • 文章类型: Journal Article
    合成了一系列N(9)-取代的harmine衍生物,并评估了它们在一组癌细胞系上的抗癌活性,它们的凋亡诱导和细胞周期效应。结果表明,N(9)-取代的harmine衍生物具有抗癌作用。特别是,N(9)-卤代烷基衍生物9a-9c和N(9)-酰基harmine衍生物11c和11d,IC50值小于1μM,对A-549和/或MCF-7细胞系比阿霉素更有效。此外,构效关系(SARs)表明,在harmine的N(9)位引入卤代烷基或苯磺酰基可以显着提高抗癌活性。最具活性的化合物(11d)在G2/M期引起细胞周期停滞,并以剂量依赖性方式诱导细胞凋亡。
    A series of N(9)-substituted harmine derivatives were synthesized and evaluated for their anticancer activity on a panel of cancer cell lines, their apoptosis induction and their cell cycle effects. The results showed that N(9)-substituted harmine derivatives had anticancer effects. In particular, N(9)-haloalkyl derivatives 9a-9c and N(9)-acyl harmine derivatives 11c and 11d, with IC50 values less than 1μM, were more potent than doxorubicin against A-549 and/or MCF-7 cell lines. Moreover, structure-activity relationships (SARs) indicated that introducing a haloalkyl or benzenesulfonyl group in the N(9)-position of harmine could significantly increase the anticancer activity. The most active compound (11d) caused cell cycle arrest in the G2/M phase, and induced cell apoptosis in a dose-dependent manner.
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  • 文章类型: Journal Article
    抗生素抗性病原体的出现是细菌感染治疗中持续存在的主要问题。为了开发有前途的抗结核和抗菌先导化合物,我们设计并合成了一系列具有抗结核分枝杆菌和金黄色葡萄球菌活性的2-氨基噻唑结合硝基呋喃衍生物。八个化合物12e,12k,12l,12m,18a,18d,18e,18j成为有前途的抗结核药。讨论了结构-活性关系(SARs),并表明在5-硝基-N-(4-苯基噻唑-2-基)呋喃-2-甲酰胺的苯的3位取代的衍生物表现出优异的效力。最有效的化合物18e,在这个位置被苯甲酰胺取代,显示对MtbH37Ra的最小抑制浓度(MIC)为0.27μg/mL,对金黄色葡萄球菌的最小抑制浓度为1.36μg/mL。此外,化合物18e对正常Vero细胞无明显的细胞毒性(IC50=50.2μM)。结果表明,氨基噻唑共轭硝基呋喃的新型支架将是一类有前途的有效抗结核和抗菌剂。
    The emergence of antibiotic resistant pathogens is an ongoing main problem in the therapy of bacterial infections. In order to develop promising antitubercular and antibacterial lead compounds, we designed and synthesized a new series of derivatives of 2-aminothiazole conjugated nitrofuran with activities against both Mycobacterium tuberculosis and Staphylococcus aureus. Eight compounds 12e, 12k, 12l, 12m, 18a, 18d, 18e, and 18j emerged as promising antitubercular agents. Structure-activity relationships (SARs) were discussed and showed that the derivatives substituted at the position-3 of benzene of 5-nitro-N-(4-phenylthiazol-2-yl)furan-2-carboxamide exhibited superior potency. The most potent compound 18e, substituted with benzamide at this position, displayed minimum inhibitory concentrations (MICs) of 0.27μg/mL against Mtb H37Ra and 1.36μg/mL against S. aureus. Furthermore, compound 18e had no obvious cytotoxicity to normal Vero cells (IC50=50.2μM). The results suggest that the novel scaffolds of aminothiazole conjugated nitrofuran would be a promising class of potent antitubercular and antimicrobial agents.
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