Snakes

  • 文章类型: Journal Article
    背景:人类活动正在推动气候,土地覆盖,和人口变化(全球变化),并改变蛇咬伤的基线地理分布。全球变化对蛇和面临蛇咬风险的社区的相互作用影响知之甚少,限制预测和管理蛇咬伤风险未来变化的能力。
    方法:在这项建模研究中,我们预测了全球变化将如何影响斯里兰卡的蛇咬伤事件,作为蛇咬伤发生率很高的模型系统。我们使用共享的社会经济途径(SSP)情景分析框架来整合以下领域的预测:气候变化(来自WorldClim的历史趋势加上协调区域降尺度实验-南亚存储库中的三个基础区域循环模型[RCM],具有两种排放途径[代表性浓度途径RCP4.5和RCP8.5]);土地覆盖变化(Dyna-CLUE模型);2010年1月1日至2050年12月31日的人口密度变化(基于世界网格人口数据)。预测在三种不同的发展情景下进行了整合:可持续性途径(SS1和没有进一步的排放),中间道路(SSP2和RCP4.5),和化石燃料途径(SSP5和RCP8.5)。对于SSP2和SSP5,我们嵌套了三个不同的RCM(CNRM-CM5,GFDL-CCM3和MPI-ESM-LR;平均值表示共识),以说明气候预测的变异性。数据用作机械模型的输入,该模型根据人蛇接触模式预测蛇咬伤的发生率。
    结果:从2010年到2050年,在国家一级,斯里兰卡的envening发病率预计将下降12·0-23·0%,取决于场景。SSP5-RCP8.5的envening发病率下降率高于SSP1和SSP2-RCP4.5。在全国范围内,envenoming发病率的变化是异质的。在SS1中,预计人口增长的城市地区发病率下降,随着土地覆盖向人类阶级的转变。在SSP2-RCP4.5和SSP5-RCP8.5中,大多数地区预计发病率下降(SSP5-RCP8.5显示发病率下降幅度最大),而中部高地和北部等地区则呈局部增长。在模型中,随着人口的增长而减少,土地利用向人为类别的变化(潜在的职业危险因素转移),减少一些蛇的数量,可能是由于全球变暖和气候和栖息地适应性降低,一些蛇种的位移。
    结论:预计未来几十年斯里兰卡蛇咬伤发生率总体下降,但与可持续发展目标明显冲突。因此,减轻蛇咬伤发生率的努力将需要考虑可持续性干预措施的潜在影响,特别是与气候和土地利用变化以及预计发病率增加的地区有关。鉴于全球变化,被忽视的热带病和与生物多样性有关的公共卫生问题,比如蛇咬伤,应由环境和卫生利益相关者共同管理。
    背景:英国医学研究委员会。
    BACKGROUND: Human activities are driving climate, land cover, and population change (global change), and shifting the baseline geographical distribution of snakebite. The interacting effects of global change on snakes and communities at risk of snakebite are poorly understood, limiting capacity to anticipate and manage future changes in snakebite risk.
    METHODS: In this modelling study, we projected how global change will affect snakebite envenoming incidence in Sri Lanka, as a model system that has a high incidence of snakebite. We used the shared socioeconomic pathway (SSP) scenario analysis framework to integrate forecasts across the domains of: climate change (historical trend from WorldClim plus three underlying regional circulation models [RCMs] in the Coordinated Regional Downscaling Experiment-South Asia repository, with two emissions pathways [representative concentration pathways RCP4.5 and RCP8.5]); land cover change (Dyna-CLUE model); and human population density change (based on Gridded Population of the World data) from Jan 1, 2010 to Dec 31, 2050. Forecasts were integrated under three different development scenarios: a sustainability pathway (SSP1 and no further emissions), a middle-of-the-road pathway (SSP2 and RCP4.5), and a fossil-fuelled pathway (SSP5 and RCP8.5). For SSP2 and SSP5, we nested three different RCMs (CNRM-CM5, GFDL-CCM3, and MPI-ESM-LR; mean averaged to represent consensus) to account for variability in climate predictions. Data were used as inputs to a mechanistic model that predicted snakebite envenoming incidence based on human-snake contact patterns.
    RESULTS: From 2010 to 2050, at the national level, envenoming incidence in Sri Lanka was projected to decrease by 12·0-23·0%, depending on the scenario. The rate of decrease in envenoming incidence was higher in SSP5-RCP8.5 than in SSP1 and SSP2-RCP4.5. Change in envenoming incidence was heterogenous across the country. In SSP1, incidence decreased in urban areas expected to have population growth, and with land cover changes towards anthropised classes. In SSP2-RCP4.5 and SSP5-RCP8.5, most areas were projected to have decreases in incidence (SSP5-RCP8.5 showing the largest area with incidence reductions), while areas such as the central highlands and the north of the country showed localised increases. In the model, decreases occurred with human population growth, land use change towards anthropised classes (potentially shifting occupational risk factors), and decreasing abundance of some snake species, potentially due to global warming and reduced climatic and habitat suitability, with displacement of some snake species.
    CONCLUSIONS: Snakebite envenoming incidence was projected to decrease overall in the coming decades in Sri Lanka, but with an apparent emerging conflict with sustainability objectives. Therefore, efforts to mitigate snakebite envenoming incidence will need to consider the potential impacts of sustainability interventions, particularly related to climate and land use change and in areas where increases in incidence are projected. In view of global change, neglected tropical diseases and public health issues related to biodiversity, such as snakebite, should be managed collaboratively by both environment and health stakeholders.
    BACKGROUND: UK Medical Research Council.
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  • 文章类型: Dataset
    Rhabdophis神经,一种在中国广泛分布的蛇,具有独特的特征:颈部和背部皮肤下的腺体,称为神经背腺。这些特征使其成为研究遗传多样性和复杂性状进化的有价值的课题。在这项研究中,我们使用MGI短读测序获得了一个高质量的染色体水平参考基因组。PacBioRevio长读测序,和Hi-C测序技术。最终组装包括1.92Gb的R.nuchalis基因组,锚定于20条染色体(包括9条大染色体和11条微染色体),重叠群N50为104.79Mb,脚手架N50为204.96Mb,和97.50%的BUSCO完整性。此外,我们注释了总共1.09Gb的重复序列(占整个基因组的56.51%),并鉴定了22,057个蛋白质编码基因。这种高质量的R.nuchalis参考基因组为理解该物种的遗传多样性和进化史提供了必要的基因组数据。以及促进物种保护工作和比较基因组学研究。
    Rhabdophis nuchalis, a snake widely distributed in China, possesses a unique trait: glands beneath the skin on its neck and back, known as nucho-dorsal glands. These features make it a valuable subject for studying genetic diversity and the evolution of complex traits. In this study, we obtained a high-quality chromosome-level reference genome of R. nuchalis using MGI short-read sequencing, PacBio Revio long-read sequencing, and Hi-C sequencing techniques. The final assembly comprised 1.92 Gb of the R. nuchalis genome, anchored to 20 chromosomes (including 9 macrochromosomes and 11 microchromosomes), with a contig N50 of 104.79 Mb, a scaffold N50 of 204.96 Mb, and a BUSCO completeness of 97.50%. Additionally, we annotated a total of 1.09 Gb of repetitive sequences (which constitute 56.51% of the entire genome) and identified 22,057 protein-coding genes. This high-quality reference genome of R. nuchalis furnishes essential genomic data for comprehending the genetic diversity and evolutionary history of the species, as well as for facilitating species conservation efforts and comparative genomics studies.
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  • 文章类型: Journal Article
    解剖学损害了对活蛇的体长和头部大小进行测量的精度和准确性。身体措施(鼻孔长度,SVL)包含许多滑膜椎间关节,每个允许弯曲和有限的伸展和压缩。在静息和拉伸条件下,14种系统发育多样性物种的躯干的放射学图以及对椎间关节的解剖和组织学分析表明,这些关节的滑膜性质是SVL测量差异的基础。同样,连接阿尔西诺皮人蛇的可移动鼻子和下颌元素的粘弹性组织的普遍存在和多样性是头部长度和宽度测量差异的基础。对于头部和钳口装置的整体尺寸,对于许多蛇来说,最容易和相对精确地测量的部分是下颌骨,因为它只有一个活动关节。至于准确性,椎间和颅骨关节的解剖结构支持这样的假设,即在活蛇中,头部和躯干没有确切的尺寸。
    Anatomy compromises the precision and accuracy of measurements made of the body length and head size of live snakes. Body measures (snout-vent length, SVL) incorporate many synovial intervertebral joints, each allowing flexion and limited extension and compression. Radiographs of the trunk in 14 phylogenetically diverse species in resting and stretched conditions combined with dissections and histological analysis of intervertebral joints show that the synovial nature of these joints underlies the variance in SVL measures. Similarly, the ubiquity and variety of viscoelastic tissues connecting mobile snout and jaw elements of alethinophidian snakes underlie variances in length and width measures of the head. For the overall size of the head and jaw apparatus, the part that can be most easily and relatively precisely measured for many snakes is the mandible because it has only one mobile joint. As to accuracy, the anatomy of intervertebral and cranial joints supports the hypothesis that in living snakes, the head and trunk have no exact size.
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  • 文章类型: Journal Article
    Snakes are sometimes regarded as pets and are used in traditional Chinese medicine. Cryptosporidium spp. are frequently identified in snakes, representing an important pathogen and causing gastrointestinal diseases. Current data indicate that risk factors for infection and patterns of clinical symptom presentation may differ among Cryptosporidium spp. To better understand the infection status by Cryptosporidium spp., fecal samples were collected from 603 asymptomatic and 147 symptomatic snakes in 26 provinces of China. These samples came from Elaphe guttata, Elaphe obsoleta, Pituophis melanoleucus, Thamnophis sirtalis, Lampropeltis getulus, and Heterodon nasicus. The partial small subunit (SSU) rRNA gene was amplified using nested polymerase chain reaction (PCR) to investigate the infection rate of Cryptosporidium spp., and to assess evolutionary relationships and genetic characterization. A prevalence of 20% was recorded in asymptomatic snakes, with age identified as a significant risk factor. In contrast, 70% of symptomatic snakes were positive for Cryptosporidium spp., with Cryptosporidium serpentis and Cryptosporidium varanii (syn. C. saurophilum). Further analysis revealed a potential association between C. serpentis and regurgitation, and C. varanii and diarrhea, while neither species was linked to flatulence. To our knowledge, this is the first study to report Cryptosporidium spp. and associated clinical signs in symptomatic snakes in China. This study aims to enhance the understanding of Cryptosporidium infections, risk factors, and clinical manifestations in snakes, providing data crucial for the control and prevention of cryptosporidiosis.
    UNASSIGNED: Cryptosporidium spp. chez les serpents captifs de 26 provinces de Chine : prévalence, caractérisation moléculaire et symptômes.
    UNASSIGNED: Les serpents sont parfois considérés comme animaux de compagnie et sont utilisés en médecine traditionnelle chinoise. Des Cryptosporidium spp. sont fréquemment identifiés chez les serpents, ont un rôle d’agent pathogène important et provoquent des maladies gastro-intestinales. Les données actuelles indiquent que les facteurs de risque d’infection et les schémas de présentation des symptômes cliniques peuvent varier en fonction des espèces de Cryptosporidium. Pour mieux comprendre l’état d’infection par Cryptosporidium spp., des échantillons fécaux ont été collectés auprès de 603 serpents asymptomatiques et 147 serpents symptomatiques dans 26 provinces de Chine. Ces échantillons provenaient d’Elaphe guttata, Elaphe obsoleta, Pituophis melanoleucus, Thamnophis sirtalis, Lampropeltis getulus et Heterodon nasicus. Le gène de l’ARNr de la petite sous-unité partielle (SSU) a été amplifié à l’aide d’une réaction en chaîne par polymérase (PCR) imbriquée pour étudier le taux d’infection par Cryptosporidium spp. et évaluer les relations évolutives et la caractérisation génétique. Une prévalence de 20 % a été trouvée chez les serpents asymptomatiques, l’âge étant identifié comme un facteur de risque important. En revanche, 70 % des serpents symptomatiques étaient positifs à Cryptosporidium spp. avec Cryptosporidium serpentis et Cryptosporidium varanii (syn. C. saurophilum). Une analyse plus approfondie a révélé une association potentielle entre C. serpentis et la régurgitation, et C. varanii et la diarrhée, alors qu’aucune des deux espèces n’était liée aux flatulences. À notre connaissance, il s’agit ici de la première étude à signaler la présence de Cryptosporidium spp. et les signes cliniques associés chez des serpents symptomatiques en Chine. Cette étude vise à améliorer la compréhension des infections à Cryptosporidium, des facteurs de risque et des manifestations cliniques chez les serpents, en fournissant des données cruciales pour le contrôle et la prévention de la cryptosporidiose.
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  • 文章类型: Journal Article
    归巢通常是动物行为和空间生态的关键方面。迁移被认为是一种野生动物管理策略,可以减少人与野生动物的对抗,但是如果动物试图回到它们原来的捕获位置,这种策略可能不会有效。将动物从可能发生人与野生动物互动的地点转移是一种广泛但有争议的解决冲突的干预措施。在印度,蛇通常是这种易位的主体,但是,与居民蛇相比,关于易位蛇行为的信息很少。印度蟒蛇(蟒蛇),印度次大陆最大的食肉动物之一,被IUCN列为濒临威胁。我们对Moyar河谷的14只成年印度蟒蛇的运动进行了为期两年的无线电追踪研究(2018年12月至2020年12月),在Sathyamangalam和Mudumalai老虎保护区内。14条蟒蛇中有11条从捕获地点转移了0.28-55.7公里,虽然3条蟒蛇没有易位:6条易位短距离(距离捕获<5公里;范围0.28-4.67公里),2个被转移到中等距离(距捕获位置9-11公里),和3个被转移到长距离(从捕获位置21-55.7公里)。六只蛇中的四只短距离移动,都回到了原始捕获位置的500米以内,并且所有6个返回超过60%的转移距离到初始捕获位置。在两条中等距离的蛇中,两者都回到了捕获地点的1.1公里范围内(~90%的距离)。三只长距离易位的蛇都没有成功返回其捕获地点。在释放的前2个月内,移位的蟒蛇的净移动距离比常驻蛇大。基于这些结果,长距离易位可能是一种有效的策略,以尽量减少人与蟒蛇的冲突,而短距离或中距离易位不太可能成功。然而,需要对易位蛇的长期存活以及可以防止释放后直接异常运动行为的软释放方法进行更多研究。
    Homing is often a critical aspect of an animal\'s behavioural and spatial ecology. Translocation is considered to be a wildlife management strategy that could reduce human-wildlife confrontation, but this strategy may not be effective if animals attempt to home to their original capture location. Translocation of animals from sites where possible human-wildlife interaction occurs is a widespread but controversial intervention to resolve conflicts. In India, snakes are often the subject of such translocations, but there is a paucity of information on the behaviour of translocated snakes compared to resident snakes. The Indian python (Python molurus), one of the largest carnivores in the Indian subcontinent, is classified as Near Threatened by the IUCN. We conducted a two-year radio-tracking study (December 2018 to December 2020) on the movements of 14 adult Indian pythons in the Moyar River Valley, within the Sathyamangalam and Mudumalai Tiger Reserves. Eleven of the 14 pythons were translocated 0.28-55.7 kms from their capture locations, while 3 pythons were not translocated: 6 were translocated short distances (<5 km from capture; range 0.28-4.67 kms), 2 were translocated to medium distances (9-11 kms from capture location), and 3 were translocated to long distances (21-55.7 kms from capture location). Four of the six snakes translocated short distances all returned to within 500 m of their original capture locations, and all 6 returned over 60 % of the translocated distance to the initial capture location. Of the two snakes translocated medium distances, both returned to within 1.1 km of the capture location (∼90 % of the distance home). None of the three snakes that were translocated long distances successfully returned to their capture locations. Translocated pythons exhibited greater net movement distances than resident snakes within the first 2 months of release. Based on these results, long-distance translocation may be an effective strategy to minimize human-python conflict, while short or medium distance translocation is unlikely to be successful. However, more research is needed about the long-term survival of translocated snakes as well as soft-release methodologies that could prevent aberrant movement behaviour directly following release.
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  • 文章类型: Journal Article
    爬行动物和两栖动物主要存在于许多环境中,包括作为宠物饲养的家庭区域。它们经常藏有人畜共患病原体,这会给人类带来严重的感染风险,主要是免疫受损的个体,老年人,孩子们,和孕妇。已经进行了几项研究来验证冷血动物在某些细菌的流行病学中的作用,主要是沙门氏菌,而很少关注这些动物作为葡萄球菌的来源。这些细菌通常具有抗微生物药物抗性,它们是机会性病原体,会导致人类和动物的相关感染,家庭和野生。无症状的爬行动物和两栖动物通常含有葡萄球菌菌株,如金黄色葡萄球菌和凝固酶阴性葡萄球菌。;然而,这些细菌与通常在应激条件下出现在动物中的临床状况有关。在所有情况下,冷血动物中的葡萄球菌也应引起更多关注,因为它们对人类和兽医学的影响。
    Reptiles and amphibians are largely present in many environments, including domestic areas when they are kept as pet animals. They often harbor zoonotic pathogens, which can pose a serious risk of infection for humans, mainly immunocompromised individuals, the elderly, children, and pregnant women. Several studies have been carried out to verify the role of cold-blooded animals in the epidemiology of some bacteria, mainly Salmonella, whereas scarce attention has been focused on these animals as a source of staphylococci. These bacteria are often antimicrobial-resistant and they act as opportunistic pathogens, which can cause relevant infections in humans and animals, both domestic and wild. Asymptomatic reptiles and amphibians often harbor staphylococcal strains, such as Staphylococcus aureus and coagulase-negative Staphylococcus spp.; however, these bacteria have been associated with clinical conditions that usually appear in animals under stress conditions. In all cases, greater attention should also be focused on staphylococci in cold-blooded animals due to their implications in human and veterinary medicine.
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  • 文章类型: Journal Article
    波多黎各拥有多样化的脊椎动物动物区系,具有很高的地方性。然而,尽管已经出版了几本有关脊椎动物多样性的书籍和当地鸟类清单,两栖动物清单,爬行动物,蝙蝠在本地和区域范围内都缺乏或不存在。在这项研究中,我们记录了两栖动物,爬行动物,马塔·德·普拉塔诺野外站和自然保护区的蝙蝠动物区系,在阿雷西博,波多黎各。我们记录了四种两栖动物,七只蜥蜴,三条蛇,和九只蝙蝠。尽管以前使用该自然保护区的样本进行了工作,这是MatadePlatano野外站和自然保护区的第一个脊椎动物清单。我们根据调查结果提供更多的自然历史观察,并强调纳入当地和区域物种清单对下游研究和保护的重要性。
    Puerto Rico harbors a diverse vertebrate fauna with high levels of endemism. However, while several books for vertebrate diversity and local checklists for birds have been published, checklists of amphibians, reptiles, and bats are lacking or nonexistent at both local and regional scales. In this study, we documented the amphibian, reptile, and bat faunas at Mata de Plátano Field Station and Nature Reserve, in Arecibo, Puerto Rico. We document four species of amphibians, seven lizards, three snakes, and nine bats. Despite prior works using samples from this nature reserve, this represents the first vertebrate checklist for the Mata de Plátano Field Station and Nature Reserve. We provide additional natural history observations based on our survey results and highlight the importance of including local and regional checklists of species for downstream research and conservation.
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  • 文章类型: Journal Article
    红外视觉是一种高度专业化的感觉系统,它在三个蛇中独立进化。显然,会聚进化发生在红外感应蛇的瞬时受体电位锚蛋白1(TRPA1)蛋白中。然而,这个基因只能解释红外信号是如何接收的,而不是这些信号的传导和处理。我们对Xenopeltis单色的基因组进行了测序,一种关键的蟒蛇群,并对两个红外感应蛇之间的融合进行了全基因组分析。我们的结果揭示了与神经发育和其他功能相关的通路中普遍存在的分子适应,平行选择与三叉神经结构组织相关的位点。此外,我们在一组基因中发现了趋同的氨基酸取代的证据,包括TRPA1和TRPM2。该分析还确定了与面神经结构组织和视神经发育有关的12个基因附近的非编码元件的收敛加速进化。因此,会聚演化发生在毒蛇和蟒蛇的红外视觉的多个维度上,以及氨基酸取代,非编码元素,基因和功能。这些变化使独立的蛇群能够开发和使用红外视觉。
    Infrared vision is a highly specialized sensory system that evolved independently in three clades of snakes. Apparently, convergent evolution occurred in the transient receptor potential ankyrin 1 (TRPA1) proteins of infrared-sensing snakes. However, this gene can only explain how infrared signals are received, and not the transduction and processing of those signals. We sequenced the genome of Xenopeltis unicolor, a key outgroup species of pythons, and performed a genome-wide analysis of convergence between two clades of infrared-sensing snakes. Our results revealed pervasive molecular adaptation in pathways associated with neural development and other functions, with parallel selection on loci associated with trigeminal nerve structural organization. In addition, we found evidence of convergent amino acid substitutions in a set of genes, including TRPA1 and TRPM2. The analysis also identified convergent accelerated evolution in non-coding elements near 12 genes involved in facial nerve structural organization and optic nerve development. Thus, convergent evolution occurred across multiple dimensions of infrared vision in vipers and pythons, as well as amino acid substitutions, non-coding elements, genes and functions. These changes enabled independent groups of snakes to develop and use infrared vision.
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  • 文章类型: News
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  • 文章类型: Journal Article
    毒液代表了许多有毒捕食者的关键适应,允许他们通过化学战而不是物理战迅速固定猎物。猎物和捕食者之间的进化军备竞赛被认为是影响捕食性毒液效力和组成的主要因素。饮食受限的捕食者有望向其局灶性猎物进化出特别有效的毒液,对替代猎物的功效较低。这里,我们评估了猎物特异性毒液进化的假设,关注限制饮食的效果,猎物防御,和猎物抵抗。还讨论了猎物特异性作为潜在的进化死胡同。然后,我们概述了有关毒液猎物特异性的当前知识,强调蛇,锥蜗牛,和蜘蛛。由于目前关于毒液猎物特异性的证据仍然相当有限,我们还概述了其调查的最佳方法和方法,并简要总结了潜在的模型组。最后,讨论了猎物特异性毒素的可能应用。
    Venom represents a key adaptation of many venomous predators, allowing them to immobilise prey quickly through chemical rather than physical warfare. Evolutionary arms races between prey and a predator are believed to be the main factor influencing the potency and composition of predatory venoms. Predators with narrowly restricted diets are expected to evolve specifically potent venom towards their focal prey, with lower efficacy on alternative prey. Here, we evaluate hypotheses on the evolution of prey-specific venom, focusing on the effect of restricted diet, prey defences, and prey resistance. Prey specificity as a potential evolutionary dead end is also discussed. We then provide an overview of the current knowledge on venom prey specificity, with emphasis on snakes, cone snails, and spiders. As the current evidence for venom prey specificity is still quite limited, we also overview the best approaches and methods for its investigation and provide a brief summary of potential model groups. Finally, possible applications of prey-specific toxins are discussed.
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