Smc4

SMC4
  • 文章类型: Journal Article
    染色质压缩为有丝分裂染色体对于细胞分裂过程中基因组的忠实传递至关重要。在真核生物中,染色体形态发生是由凝聚素复合物调节的,尽管用于将凝缩素靶向染色质并引发缩合的确切机制尚不清楚。这里,我们发现凝缩蛋白包含一个内在无序区域(IDR),该区域在有丝分裂早期调节其与染色质的关联并表现出相分离。我们描述了IDR中的DNA结合基序,删除后,在染色体凝聚和分离中造成显著的缺陷,染色质上的凝缩素周转时间不当,细胞死亡。重要的是,我们证明了凝缩素IDR在转移到复合物中的其他亚基时可以赋予细胞周期调节功能,表明其自主性。总的来说,我们的研究揭示了在有丝分裂早期染色体凝聚的分子基础,以及这个过程如何最终促进基因组的稳定性和无缺陷的细胞分裂。
    The compaction of chromatin into mitotic chromosomes is essential for faithful transmission of the genome during cell division. In eukaryotes, chromosome morphogenesis is regulated by the condensin complex, though the exact mechanism used to target condensin to chromatin and initiate condensation is not understood. Here, we reveal that condensin contains an intrinsically disordered region (IDR) that modulates its association with chromatin in early mitosis and exhibits phase separation. We describe DNA-binding motifs within the IDR that, upon deletion, inflict striking defects in chromosome condensation and segregation, ill-timed condensin turnover on chromatin, and cell death. Importantly, we demonstrate that the condensin IDR can impart cell cycle regulatory functions when transferred to other subunits within the complex, indicating its autonomous nature. Collectively, our study unveils the molecular basis for the initiation of chromosome condensation in early mitosis and how this process ultimately promotes genomic stability and faultless cell division.
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  • 文章类型: Journal Article
    背景:乳腺癌(BRCA)是最常见的恶性肿瘤之一。染色体(SMC)基因家族的结构维持已被证明在人类癌症中起重要作用。然而,SMC家族在BRCA中的作用尚不清楚.本研究旨在探讨整体SMCs在BRCA中的作用及潜在临床价值。
    方法:TIMER和UALCAN数据库用于分析表达水平。通过cBioPortal分析遗传变异。通过UCLCAN分析启动子甲基化和蛋白质水平。通过Metascape数据库分析GO和KEGG。通过Kaplan-Meier和多变量cox回归分析分析SMC的预后价值。免疫浸润分析由CIBERSORT进行。通过癌症免疫图谱进行免疫治疗结果预测。通过GDSC和R语言进行靶向药物治疗结果预测。通过CCK8测试细胞活力,并通过伤口愈合测定测试迁移。使用异种移植模型来研究SMC2的体内作用。
    结果:SMC1A的表达水平,BRCA组织中SMC2、SMC4、SMC5和SMC6mRNA表达增加,与启动子甲基化呈负相关。SMC2和SMC4过表达与生存呈负相关。SMCs家族调控基因的功能主要与ATPase活性有关。大多数SMC的表达与免疫治疗和药物治疗结果呈负相关。干扰SMC2和SMC4降低了5-氟尿嘧啶和奥沙利铂的IC50值,并抑制了MCF7细胞的迁移。si-SMC2组的肿瘤生长和重量显著降低。
    结论:结合生物信息学和临床标本分析证实SMC2和SMC4是BRCA的独立预后因素,提示其对BRCA诊断和治疗的意义。
    BACKGROUND: Breast cancer (BRCA) is one of the most common malignant tumors. The structural maintenance of chromosome (SMC) gene family has been shown to play an important role in human cancers. However, the role of SMC families in BRCA is unclear. This study aimed to explore the role and potential clinical value of whole SMCs in BRCA.
    METHODS: TIMER and UALCAN database were used to analysis the expression level. Genetic variations were analyzed by cBioPortal. Promoter methylation and protein level were analyzed by UCLCAN. GO and KEGG were analyzed by Metascape database. Prognostic value of SMCs was analyzed by Kaplan-Meier and multivariate cox regression analyses. Immune infiltration analysis was conducted by CIBERSORT. Immunotherapy outcome prediction was conducted by Cancer Immunome Atlas. Targeted drug therapy outcome prediction was taken by GDSC and R language. The cell viability was tested by CCK8 and migration was tested by wound healing assay. Xenograft model was used to investigate the in vivo role of SMC2.
    RESULTS: Expression levels of SMC1A, SMC2, SMC4, SMC5 and SMC6 mRNA were increased in BRCA tissues, and negatively correlated with promoter methylation. Overexpression of SMC2 and SMC4 was negatively correlated with survival. Function of SMCs family regulatory genes was mainly related to ATPase activity. Expression of most SMCs was negatively correlated with immunotherapy and drug therapy outcomes. Interfere SMC2 and SMC4 decreased IC50 values of 5-fluorouracil and oxaliplatin and inhibited the migration of MCF7 cells. Tumor growth and weights were significantly decreased in si-SMC2 groups.
    CONCLUSIONS: Combined bioinformatics and clinical specimen analysis verified SMC2 and SMC4 as independent prognostic factors in BRCA, suggesting their significance for the diagnosis and treatment of BRCA.
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  • 文章类型: Journal Article
    转录因子叉头盒蛋白O1(FoxO1)与卵巢癌(OC)的发生发展密切相关,然而,其作用和分子机制仍不清楚。在这里,我们发现FoxO1在OC患者的临床样本中高表达,并且与不良预后显著相关.FoxO1敲低在体外和体内抑制OC细胞的增殖。ChIP-seq结合GEPIA2和Kaplan-Meier数据库分析表明,4号染色体(SMC4)的结构维持是FoxO1的下游靶标,FoxO1通过与其-1400/-1390bp启动子结合促进SMC4转录。SMC4的高表达显著阻断了FoxO1敲低的抑瘤效应。更进一步,FoxO1通过转录激活甲基转移酶样14(METTL14)和增加其编码序列区的SMC4m6A甲基化来增加SMC4mRNA的丰度。癌症基因组图谱数据集分析证实了OC中FoxO1、SMC4和METTL14表达之间的显著正相关。总之,本研究揭示了FoxO1调控SMC4的分子机制,并建立了FoxO1/METTL14/SMC4表达在OC发生中的临床联系,从而提供了一个潜在的诊断靶点和治疗策略.
    The transcription factor forkhead box protein O1 (FoxO1) is closely related to the occurrence and development of ovarian cancer (OC), however its role and molecular mechanisms remain unclear. Herein, we found that FoxO1 was highly expressed in clinical samples of OC patients and was significantly correlated with poor prognosis. FoxO1 knockdown inhibited the proliferation of OC cells in vitro and in vivo. ChIP-seq combined with GEPIA2 and Kaplan-Meier database analysis showed that structural maintenance of chromosome 4 (SMC4) is a downstream target of FoxO1, and FoxO1 promotes SMC4 transcription by binding to its -1400/-1390 bp promoter. The high expression of SMC4 significantly blocked the tumor inhibition effect of FoxO1 knockdown. Furtherly, FoxO1 increased SMC4 mRNA abundance by transcriptionally activating methyltransferase-like 14 (METTL14) and increasing SMC4 m6A methylation on its coding sequence region. The Cancer Genome Atlas dataset analysis confirmed a significant positive correlation between FoxO1, SMC4, and METTL14 expression in OC. In summary, this study revealed the molecular mechanisms of FoxO1 regulating SMC4 and established a clinical link between the expression of FoxO1/METTL14/SMC4 in the occurrence of OC, thus providing a potential diagnostic target and therapeutic strategy.
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  • 文章类型: Journal Article
    ZNF131是一种锌指蛋白,在多种癌症中充当具有致癌作用的转录因子。在这项研究中,我们旨在探讨ZNF131在肝细胞癌(HCC)中的选择性剪接特征,它对细胞周期进程的调节作用,和下游效应器。使用来自癌症基因组图谱(TCGA)-肝肝细胞癌(LIHC)数据集的数据进行ZNF131转录谱和HCC存活分析。染色质免疫沉淀(ChIP)-qPCR和双荧光素酶报告基因测定用于探索转录调控。CCK-8、集落形成和异种移植肿瘤模型用于研究HCC肿瘤生长。结果显示,ZNF131亚型2在HCC组织中上调,其上调与不利的总生存期(OS)和无进展间隔(PFI)相关。内源性ZNF131的敲低抑制HCC细胞生长并诱导G2/M细胞周期停滞。ZNF131通过与ZBTB33和ZBTB33识别基序相互作用而与SMC4启动子结合。ZNF131在HCC细胞中转录激活SMC4表达。ZNF131shRNA的肿瘤抑制作用可以通过强制SMC4过表达部分逆转。总之,这项研究强调ZNF131/ZBTB33/SMC4轴是肝癌病理性细胞周期和增殖的驱动因素。
    ZNF131 is a Zinc finger protein that acts as a transcription factor with oncogenic effects in multiple cancers. In this study, we aimed to explore the alternative splicing profile of ZNF131 in hepatocellular carcinoma (HCC), its regulatory effects on cell-cycle progression, and the downstream effectors. ZNF131 transcriptional profile and HCC survival analysis were conducted using data from the Cancer Genome Atlas (TCGA)-Liver Hepatocellular Cancer (LIHC) dataset. Chromatin immunoprecipitation (ChIP)-qPCR and dual-luciferase reporter assays were utilized to explore transcriptional regulation. CCK-8, colony formation and xenograft tumor models were used to study HCC tumor growth. Results showed that ZNF131 isoform 2 is upregulated in HCC tissues and its upregulation was associated with unfavorable overall survival (OS) and progression-free interval (PFI). Knockdown of endogenous ZNF131 inhibits HCC cell growth and induces G2/M cell-cycle arrest. ZNF131 binds to the SMC4 promoter by interacting with ZBTB33 and the ZBTB33 recognizing motif. ZNF131 transcriptionally activates SMC4 expression in HCC cells. The tumor-suppressive effects of ZNF131 shRNA could be partially reversed by enforced SMC4 overexpression. In summary, this study highlights the ZNF131/ZBTB33/SMC4 axis as a driver of pathological cell cycling and proliferation in HCC.
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  • 文章类型: Journal Article
    为了应对不利的环境条件,胚胎发育可能可逆地停止,称为滞育的过程。最近的报道将这种现象与肿瘤对化疗的非遗传反应联系起来,但是所涉及的机制知之甚少。这里,我们建立了SMC4在结直肠癌细胞向滞育样状态转换中的多种作用。SMC4衰减促进三种投资期糖酵解酶的表达,增加乳酸的产生,同时也抑制PGAM1。结果高乳酸水平增加ABC转运体的表达通过组蛋白乳酸化,使肿瘤细胞对化疗不敏感。SMC4作为PGAM1转录的共激活因子,SMC4和PGAM1的坐标损失影响F-肌动蛋白组装,诱导胞质分裂失败和多倍体,从而抑制细胞增殖。这些对非遗传化疗耐药机制的见解可能对该领域产生重大影响。促进我们对肿瘤中有氧糖酵解功能的理解,并可能为未来的治疗策略提供信息。
    In response to adverse environmental conditions, embryonic development may reversibly cease, a process termed diapause. Recent reports connect this phenomenon with the non-genetic responses of tumors to chemotherapy, but the mechanisms involved are poorly understood. Here, we establish a multifarious role for SMC4 in the switching of colorectal cancer cells to a diapause-like state. SMC4 attenuation promotes the expression of three investment phase glycolysis enzymes increasing lactate production while also suppressing PGAM1. Resultant high lactate levels increase ABC transporter expression via histone lactylation, rendering tumor cells insensitive to chemotherapy. SMC4 acts as co-activator of PGAM1 transcription, and the coordinate loss of SMC4 and PGAM1 affects F-actin assembly, inducing cytokinesis failure and polyploidy, thereby inhibiting cell proliferation. These insights into the mechanisms underlying non-genetic chemotherapy resistance may have significant implications for the field, advancing our understanding of aerobic glycolysis functions in tumor and potentially informing future therapeutic strategies.
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  • 文章类型: Journal Article
    背景:染色体蛋白4(SMC4)的结构维持对于染色体组装和分离至关重要,但其在贲门腺癌(CA)中的作用和机制尚不清楚。
    方法:首先通过蛋白质谱分析在20对CA肿瘤组织和邻近正常组织中检测SMC4的表达水平。然后使用蛋白质印迹分析评估CA细胞中的SMC4表达水平。通过CCK-8和克隆形成试验评价细胞增殖。使用划痕和transwell测试来研究细胞迁移和侵袭,而通过流式细胞术,我们检查了细胞凋亡和细胞周期的进展。使用蛋白质印迹研究了上皮-间质转化(EMT)和Wnt/β-catenin途径的调节作用。通过肿瘤发生实验研究SMC4对裸鼠肿瘤发展的影响。
    结果:本研究显示CA组织和细胞中SMC4的过表达。SMC4敲除能显著抑制细胞增殖,移民和入侵,刺激细胞凋亡,诱导细胞周期阻滞在CA细胞的G0/G1期,并抑制体内肿瘤生长。此外,下调SMC4导致Bcl-2、CyclinD1、CDK4、CDK6、β-catenin、磷酸化GSK-3β,N-钙黏着蛋白,还有Vimentin,随着蛋白质水平的增加,即,Bax,裂开的caspase3和E-cadherin。当SMC4过表达时,这些影响被逆转了。
    结论:SMC4可以促进CA的生物学进展,表明SMC4可能是该疾病的潜在治疗靶标。
    Structural maintenance of chromosome protein 4 (SMC4) is crucial for chromosome assembly and separation, but its role and mechanism in cardia adenocarcinoma (CA) are unknown.
    SMC4 expression levels were initially detected by protein profiling in 20 pairs of CA tumor tissues and adjacent normal tissues. The level of SMC4 expression in CA cells was then evaluated using a western blot analysis. Cell proliferation was evaluated by CCK-8 and clone formation tests. Scratch and transwell tests were used to investigate cell migration as well as invasion, while through the flow cytometry, we examined the cell apoptosis and progression of the cell cycle. The regulatory effects of the epithelial-mesenchymal transition (EMT) and the Wnt/β- catenin pathway were investigated using western blot. A tumorigenesis experiment was used to investigate the influence of SMC4 on tumor development in nude mice.
    This study showed overexpression of SMC4 in CA tissues and cells. Knockdown of SMC4 can significantly inhibit the proliferation, migration and invasion, stimulate cell apoptosis, induce cell cycle arrest in the G0/G1 phase of CA cells, and inhibit tumor growth in vivo. In addition, down-regulation of SMC4 resulted in decreased expression of Bcl-2, Cyclin D1, CDK4, CDK6, β-catenin, phosphorylated GSK-3β, N-cadherin, and Vimentin, with an increased level of proteins, i.e., Bax, cleaved-caspase3, and E-cadherin. When SMC4 was overexpressed, these effects were reversed.
    SMC4 can facilitate the biological progression of CA, suggesting that SMC4 could be a potential therapeutic target for the disease.
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  • 文章类型: Journal Article
    染色体4(SMC4)的结构维持是染色体ATPase家族的成员。SMC4最广泛报道的功能,以及整个凝缩蛋白复合物的剩余亚基,是姐妹染色单体的压缩和解离,DNA损伤修复,DNA重组,和基因组的普遍转录。研究还表明,SMC4在胚胎细胞分裂周期中起着非常重要的作用,如RNA剪接,DNA代谢过程,细胞粘附,和细胞外基质。另一方面,SMC4也是炎症先天性免疫反应的正调节剂,而过度的先天免疫反应不仅破坏免疫稳态,还可能导致自身免疫性疾病,甚至癌症.为进一步了解SMC4在肿瘤中的表达及预后价值,我们对文献和几个生物信息学数据库进行了深入的回顾,例如,癌症基因组图谱(TCGA)基因型-组织表达(GTEx),临床蛋白质组学肿瘤分析联盟(CPTAC),人类蛋白质图谱和KaplanMeier绘图仪工具,说明SMC4在肿瘤的发生和发展中起着至关重要的作用,和SMC4的高表达似乎一致预测较差的总体生存率。总之,我们提出了这篇介绍结构的综述,SMC4的生物学功能及其与肿瘤的相关性;它可能为新的肿瘤预后标志物和潜在的肿瘤治疗靶点提供新的见解。
    The structural maintenance of chromosome 4 (SMC4) is a member of the ATPase family of chromosomes. The most widely reported function of SMC4, as well as the remaining subunits of whole condensin complexes, is compression and dissociation of sister chromatids, DNA damage repair, DNA recombination, and pervasive transcription of the genome. Studies have also shown that SMC4 plays an exceedingly essential role in the division cycle of embryonic cells, such as RNA splicing, DNA metabolic process, cell adhesion, and extracellular matrix. On the other hand, SMC4 is also a positive regulator of the inflammatory innate immune response, while excessive innate immune responses not only disrupt immune homeostasis and may lead to autoimmune diseases, but even cancer. To further understand the expression and prognostic value of SMC4 in tumors, we provide an in-depth review of the literature and several bioinformatic databases, for example, The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), Clinical Proteomic Tumor Analysis Consortium (CPTAC), The Human Protein Atlas and Kaplan Meier plotter tools, illustrating that SMC4 plays a vital role in the occurrence and development of tumors, and high expression of SMC4 seems to consistently predict worse overall survival. In conclusion, we present this review which introduces the structure, biological function of SMC4, and its correlation with the tumor in detail; it might provide new insight into a novel tumor prognostic marker and potential tumor therapeutic target.
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  • 文章类型: Journal Article
    目的:本研究旨在探讨4号染色体结构维持(SMC4)在泛癌症中的预后相关性,并探讨SMC4与肉瘤免疫浸润之间的关系。
    结果:与正常组织相比,在癌组织中检测到SMC4的表达升高,通过免疫组织化学(IHC)在滑膜肉瘤组织中得到证实。此外,SMC4的高表达与肉瘤的不良预后有关,胃癌,乳腺癌,肝癌或卵巢癌。此外,SMC4与肉瘤中的免疫细胞浸润呈正相关。此外,浸润免疫细胞标志物,包括单核细胞,TAM,M1和M2呈现不同的SMC4相关免疫浸润模式。
    结论:我们的研究结果表明,SMC4与肉瘤的预后和免疫状态呈正相关。SMC4可能是肉瘤预后和免疫细胞浸润的潜在生物标志物。
    方法:几个数据库,包括ONCOMINE、GEPIA,采用Kaplan-Meier绘图仪研究SMC4在肉瘤中的表达模式,IHC证实了这一点。采用GEPIA和TIMER数据集来调查SMC4与各种癌症预后之间的关联。尤其是肉瘤.
    This study was performed to explore the prognostic relevance of structural maintenance of chromosomes 4 (SMC4) in pan-cancer and explore the association between SMC4 and immune infiltration of sarcoma.
    Elevated expression of SMC4 was detected in cancer tissues compared to normal tissue, which was confirmed in synovial sarcoma tissues with immunohistochemistry (IHC). Additionally, higher expression of SMC4 was connected to worse outcomes of sarcoma, gastric cancer, breast cancer, liver cancer or ovarian cancer. Moreover, SMC4 was positively connected to immune cell infiltrates in sarcoma. In addition, infiltrating immune cell markers including monocyte, TAM, M1 and M2 presented different SMC4-associated immune infiltration patterns.
    The results from our study showed that SMC4 was positively related to the prognosis and immunological status of sarcoma. SMC4 could be a potential biomarker for prognosis and immune cell infiltrates in sarcoma.
    Several databases including ONCOMINE, GEPIA, and Kaplan-Meier Plotter were adopted to explore the expression pattern of SMC4 in sarcoma, which was confirmed by IHC. The GEPIA and TIMER datasets were adopted to investigate the associations between SMC4 and prognosis in various cancers, especially in sarcoma.
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  • 文章类型: Journal Article
    Sepsis often causes cell death via pyroptosis and hence results in septic cardiomyopathy. Triggering receptors expressed in myeloid cells-1 (TREM-1) may initiate cellular cascade pathways and, in turn, induce cell death and vital organ dysfunction in sepsis, but the evidence is limited. We set to investigate the role of TREM-1 on nucleotide-binding oligomerization domain-like receptors with pyrin domain-3 (NLRP3) inflammasome activation and cardiomyocyte pyroptosis in sepsis models using cardiac cell line (HL-1) and mice. In this study, TREM-1 was found to be significantly increased in HL-1 cells challenged with lipopolysaccharide (LPS). Pyroptosis was also significantly increased in the HL-1 cells challenged with lipopolysaccharide and an NLRP3 inflammasome activator, nigericin. The close interaction between TREM-1 and structural maintenance of chromosome 4 (SMC4) was also identified. Furthermore, inhibition of TREM-1 or SMC4 prevented the upregulation of NLRP3 and decreased Gasdermin-D, IL-1β and caspase-1 cleavage. In mice subjected to caecal ligation and puncture, the TREM-1 inhibitor LR12 decreased the expression of NLRP3 and attenuated cardiomyocyte pyroptosis, leading to improved cardiac function and prolonged survival of septic mice. Our work demonstrates that, under septic conditions, TREM-1 plays a critical role in cardiomyocyte pyroptosis. Targeting TREM-1 and its associated molecules may therefore lead to novel therapeutic treatments for septic cardiomyopathy.
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  • 文章类型: Journal Article
    胶质瘤是中枢神经系统最常见的恶性肿瘤,预后不良,治疗有限。在这项研究中,我们致力于探讨DNA损伤修复相关基因在低级别胶质瘤(LGG)中的预后价值.我们绘制了DNA损伤修复(DDR)相关基因的景观,并通过整合的生物信息学分析将SMC4鉴定为独立的预后标记。在胶质瘤的不同组织学亚型中过表达。我们观察到,在复发性LGG患者或组织学分期晚期的患者中,SMC4表达升高。SMC4耗竭抑制LGG细胞的增殖并诱导增加的复制损伤。最后,我们预测并验证了转录因子对SMC4的转录调节,MYB,在LGG细胞中SMC4启动子区的-976bp~-837bp。一起,我们的研究将SMC4确定为LGG患者的潜在预后生物标志物,MYB可以通过修复复制损伤来促进细胞增殖,SMC4的表达可以通过转录调节。
    Glioma is the most common type of malignant tumor in the central nervous system with an unfavorable prognosis and limited treatment. In this study, we are devoted to addressing the prognostic value of DNA damage repair-related genes in low-grade glioma (LGG). We plotted the landscape of DNA damage repair (DDR)-related genes and identified SMC4 as an independent prognostic marker with integrated bioinformatics analysis, which is overexpressed in different histologic subtypes of glioma. We observed that SMC4 expression is elevated in recurrent LGG patients or those with advanced histologic staging. SMC4 depletion inhibits proliferation and induces increased replication damage in LGG cells. Lastly, we predicted and validated the transcription modulation of SMC4 by a transcription factor, MYB, at the -976bp~ -837bp of the SMC4 promoter region in LGG cells. Together, our study identified SMC4 as a potential prognostic biomarker for LGG patients, which functions to promote cell proliferation by repairing replication damage and the expression of SMC4 could be transcriptionally regulated by MYB.
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