Small molecule inhibitor

小分子抑制剂
  • 文章类型: Journal Article
    Adjuvant therapy is essential in cancer treatment to enhance primary treatment effectiveness, reduce adverse effects, and prevent recurrence. Small molecule inhibitors as adjuvants in cancer immunotherapy aim to harness their immunomodulatory properties to optimize treatment outcomes. By modulating the tumor microenvironment, enhancing immune cell function, and increasing tumor sensitivity to immunotherapy, small molecule inhibitors have the potential to improve patient responses. This review discusses the evolving use of small molecule inhibitors as adjuvants in cancer treatment, highlighting their role in enhancing the efficacy of immunotherapy and the opportunities for advancing cancer therapies in the future.
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  • 文章类型: Journal Article
    免疫检查点KLRB1和CLEC2D之间的相互作用对于肿瘤进展和免疫逃避至关重要。然而,相互作用的动力学还没有完全理解。这项研究旨在阐明各种癌症之间的相互作用,并确定可以破坏它的小分子抑制剂。我们对KLRB1-CLEC2D对进行全面的泛癌症分析,包括mRNA表达模式,病理阶段,生存结果,和单细胞组学,免疫浸润,拷贝数变化,和DNA甲基化谱。我们的研究结果表明,与正常组织相比,大多数癌症类型的CLEC2D/KLRB1比率始终较高。这个比例也随着病理阶段的进展而增加。在大多数癌症中,较低的KLRB1表达与较高的死亡率相关。与CLEC2D相反。表达变异归因于差异淋巴细胞浸润,CNV,和DNA甲基化。基于结构的虚拟筛选分析确定了包括连翘酯A和RGD肽在内的化合物是KLRB1-CLEC2D相互作用的有效抑制剂,通过微尺度热泳验证。这项研究促进了对肿瘤微环境内KLRB1-CLEC2D相互作用的理解,并引入了新的治疗策略来调节这种相互作用。
    The interplay between immune checkpoints KLRB1 and CLEC2D is crucial for tumor progression and immune evasion, yet the interaction dynamics are not fully understood. This study aims to elucidate the interaction across various cancers and identify small molecule inhibitors that can disrupt it. We perform a comprehensive pan-cancer analysis of the KLRB1-CLEC2D pair, including mRNA expression patterns, pathological stages, survival outcomes, and single-cell omics, immune infiltration, copy number variations, and DNA methylation profiles. Our findings reveal a consistently higher CLEC2D/KLRB1 ratio in most cancer types compared to normal tissues, and this ratio also increased with advancing pathological stages. Lower KLRB1 expression correlated with higher mortality in most cancers, opposite to CLEC2D. Expression variations were attributed to differential lymphocyte infiltration, CNV, and DNA methylation. Structure-based virtual screening analysis identified compounds including forsythiaside A and RGD peptides as effective inhibitors of the KLRB1-CLEC2D interaction, validated through microscale thermophoresis. This research advances understanding of the KLRB1-CLEC2D interaction within the tumor microenvironment and introduces novel therapeutic strategies to modulate this interaction.
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  • 文章类型: Journal Article
    背景:阿尔茨海默病(AD)发病机制复杂。病理生理学尚未完全了解,需要安全有效的治疗方法。糖原合成酶激酶3β(GSK-3β)通过几种信号通路介导AD进展。最近,多项研究发现,来自草药和营养品的各种天然化合物可以显着改善AD症状。
    目的:本综述旨在全面总结天然化合物作为GSK-3β抑制剂治疗AD的潜在神经保护作用。
    方法:我们对PubMed进行了系统的文献检索,ScienceDirect,WebofScience,和谷歌学者,专注于研究天然化合物作为GSK-3β抑制剂治疗AD的体外和体内研究。
    结果:该机制可能与GSK-3β激活抑制以调节β淀粉样蛋白的产生有关,tau蛋白过度磷酸化,细胞凋亡,和细胞炎症。通过回顾近年来GSK-3β抑制植物化学物质和AD干预的研究,黄酮类化合物,包括石竹A,槲皮素,Morin,淫羊藿苷,linarin,京尼平,和isoorientin被报道为用于AD治疗的有效GSK-3β抑制剂。多酚如五味子乙素,厚朴酚,Dieckol对AD模型中的GSK-3β有抑制作用,包括体内模型。莱芬,人参皂苷Rd,gypenosideXVII,Falcarindiol,表油菜素内酯,1,8-桉树脑,和穿心莲内酯是有前途的GSK-3β抑制剂。
    结论:来自草药和营养品的天然化合物是治疗AD的潜在候选药物。它们可能有资格作为衍生物用于开发提供增强的药理学特性的有希望的化合物。
    BACKGROUND: Alzheimer\'s disease (AD) pathogenesis is complex. The pathophysiology is not fully understood, and safe and effective treatments are needed. Glycogen synthase kinase 3β (GSK-3β) mediates AD progression through several signaling pathways. Recently, several studies have found that various natural compounds from herbs and nutraceuticals can significantly improve AD symptoms.
    OBJECTIVE: This review aims to provide a comprehensive summary of the potential neuroprotective impacts of natural compounds as inhibitors of GSK-3β in the treatment of AD.
    METHODS: We conducted a systematic literature search on PubMed, ScienceDirect, Web of Science, and Google Scholar, focusing on in vitro and in vivo studies that investigated natural compounds as inhibitors of GSK-3β in the treatment of AD.
    RESULTS: The mechanism may be related to GSK-3β activation inhibition to regulate amyloid beta production, tau protein hyperphosphorylation, cell apoptosis, and cellular inflammation. By reviewing recent studies on GSK-3β inhibition in phytochemicals and AD intervention, flavonoids including oxyphylla A, quercetin, morin, icariin, linarin, genipin, and isoorientin were reported as potent GSK-3β inhibitors for AD treatment. Polyphenols such as schisandrin B, magnolol, and dieckol have inhibitory effects on GSK-3β in AD models, including in vivo models. Sulforaphene, ginsenoside Rd, gypenoside XVII, falcarindiol, epibrassinolides, 1,8-Cineole, and andrographolide are promising GSK-3β inhibitors.
    CONCLUSIONS: Natural compounds from herbs and nutraceuticals are potential candidates for AD treatment. They may qualify as derivatives for development as promising compounds that provide enhanced pharmacological characteristics.
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  • 文章类型: Journal Article
    抗菌素耐药性(AMR)是一个严重的全球威胁,需要创新来有效控制病原体。细菌SOS反应,由主监管机构监管,LexA和RecA,通过有利的突变有助于AMR。用新型抑制剂靶向LexA/RecA系统可以抑制SOS反应并潜在地减少AMR的发生。RecA由于其跨物种的保守结构和功能,作为治疗靶标提出了挑战。包括人类。相反,在真核生物中不存在的LexA,可能是潜在的目标,由于其参与SOS反应,主要负责适应性诱变和AMR。我们的研究结合了生物信息学,生物化学,生物物理,分子,和基于细胞的分析提出了分枝杆菌LexA的独特抑制剂,其中我们显示抑制剂与结核分枝杆菌(Mtb)的LexA的催化位点残基直接相互作用,因此阻碍了它的分裂,抑制SOS响应,从而降低突变频率和AMR。
    Antimicrobial resistance (AMR) is a serious global threat demanding innovations for effective control of pathogens. The bacterial SOS response, regulated by the master regulators, LexA and RecA, contributes to AMR through advantageous mutations. Targeting the LexA/RecA system with a novel inhibitor could suppress the SOS response and potentially reduce the occurrence of AMR. RecA presents a challenge as a therapeutic target due to its conserved structure and function across species, including humans. Conversely, LexA which is absent in eukaryotes, can be potentially targeted, due to its involvement in SOS response that is majorly responsible for adaptive mutagenesis and AMR. Our studies combining bioinformatic, biochemical, biophysical, molecular, and cell-based assays present a unique inhibitor of mycobacterial LexA, wherein we show that the inhibitor interacts directly with the catalytic site residues of LexA of Mycobacterium tuberculosis (Mtb), consequently hindering its cleavage, suppressing SOS response thereby reducing mutation frequency and AMR.
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  • 文章类型: Journal Article
    背景:成纤维细胞激活蛋白(FAP),一种跨膜丝氨酸蛋白酶,由肿瘤基质中癌症相关成纤维细胞过度表达,是靶向放射性核素治疗药物的有趣生物标志物。FAP靶向放射性示踪剂已证明在各种实体癌中优于[18F]FDGPET/CT。然而,对于靶向放射性核素治疗(TRT),这些放射性示踪剂具有次优的肿瘤滞留.我们旨在通过在(4-喹啉酰基)-甘氨酰-2-氰基吡咯烷的8位引入取代来开发具有改善药代动力学的新型FAP靶向药效团,允许螯合剂的缀合,染料,或其他有效载荷。
    结果:在这里,我们显示了DOTA缀合的eFAP-6和磺基-氰基5缀合的eFAP-7的合成。经过化学表征,在表达FAP的细胞上测定两种示踪剂的摄取和特异性。体外,[111In]In-eFAP-6表现出优异的亲和力和更快的亲和力,虽然略低,峰值吸收比金标准[111In]In-FAPI-46。共聚焦显微镜显示eFAP-7的快速FAP介导的内化。对HT1080-huFAP异种移植小鼠的研究证实了[177Lu]Lu-eFAP-6的摄取更快。[177Lu]Lu-FAPI-46。然而,注射[177Lu]Lu-eFAP-6后24小时的肿瘤保留低于[177Lu]Lu-FAPI-46,因此目前限制了其用于TRT。
    结论:与FAPI-46相比,eFAP-6具有更高的亲和力和更快的肿瘤积累,使其成为放射性核素显像的合适化合物。经过进一步优化,eFAP系列在各种肿瘤干预方面具有巨大潜力,包括荧光引导手术和有效的靶向放射性核素治疗。
    BACKGROUND: Fibroblast activation protein (FAP), a transmembrane serine protease overexpressed by cancer-associated fibroblasts in the tumor stroma, is an interesting biomarker for targeted radionuclide theranostics. FAP-targeting radiotracers have demonstrated to be superior to [18F]FDG PET/CT in various solid cancers. However, these radiotracers have suboptimal tumor retention for targeted radionuclide therapy (TRT). We aimed to develop a novel FAP-targeting pharmacophore with improved pharmacokinetics by introducing a substitution at the 8-position of (4-quinolinoyl)-glycyl-2-cyanopyrrolidine, which allows for conjugation of a chelator, dye, or other payloads.
    RESULTS: Here we showed the synthesis of DOTA-conjugated eFAP-6 and sulfo-Cyanine5-conjugated eFAP-7. After chemical characterization, the uptake and specificity of both tracers were determined on FAP-expressing cells. In vitro, [111In]In-eFAP-6 demonstrated a superior affinity and a more rapid, although slightly lower, peak uptake than gold standard [111In]In-FAPI-46. Confocal microscopy demonstrated a quick FAP-mediated internalization of eFAP-7. Studies with HT1080-huFAP xenografted mice confirmed a more rapid uptake of [177Lu]Lu-eFAP-6 vs. [177Lu]Lu-FAPI-46. However, tumor retention at 24 h post injection of [177Lu]Lu-eFAP-6 was lower than that of [177Lu]Lu-FAPI-46, hereby currently limiting its use for TRT.
    CONCLUSIONS: The superior affinity and faster tumor accumulation of eFAP-6 over FAPI-46 makes it a suitable compound for radionuclide imaging. After further optimization, the eFAP series has great potential for various oncological interventions, including fluorescent-guided surgery and effective targeted radionuclide theranostics.
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  • 文章类型: Journal Article
    对阿米卡星和其他主要氨基糖苷类的抗性通常是由于氨基糖苷6'-N-乙酰转移酶I型酶的酶促乙酰化,其中Ib型[AAC(6')-Ib]是革兰氏阴性病原体中最普遍的。寻找酶抑制剂可能是克服耐药性和延长阿米卡星使用寿命的有效途径。小分子具有多种特性,使其对药物开发具有吸引力。基于混合物的组合库和位置扫描策略导致了化学支架的识别,吡咯烷五胺,That,当在五个位置(R1-R5)被适当的官能团取代时,抑制AAC(6')-Ib介导的阿米卡星失活。结构-活性关系研究表明,虽然分子的截短导致抑制活性的丧失,功能和立体化学的修饰对抑制特性有不同的影响。在这项研究中,我们显示了两个最具活性的化合物在R1位置的变化,2700.001和2700.003,抑制水平降低,不仅证明了在该位置存在S-苯基部分的基本性质,而且还证明了与支架的距离。另一方面,在R3、R4和R5位置上的修饰具有不同的效果,展示了优化的潜力。分子对接值(ΔG)与本文和先前研究中描述的化合物的两倍增强所需的剂量之间的相关性分析显示,ΔG值与抑制活性之间存在显着相关性。
    Resistance to amikacin and other major aminoglycosides is commonly due to enzymatic acetylation by the aminoglycoside 6\'-N-acetyltransferase type I enzyme, of which type Ib [AAC(6\')-Ib] is the most widespread among Gram-negative pathogens. Finding enzymatic inhibitors could be an effective way to overcome resistance and extend the useful life of amikacin. Small molecules possess multiple properties that make them attractive for drug development. Mixture-based combinatorial libraries and positional scanning strategy have led to the identification of a chemical scaffold, pyrrolidine pentamine, that, when substituted with the appropriate functionalities at five locations (R1-R5), inhibits AAC(6\')-Ib-mediated inactivation of amikacin. Structure-activity relationship studies have shown that while truncations to the molecule result in loss of inhibitory activity, modifications of functionalities and stereochemistry have different effects on the inhibitory properties. In this study, we show that alterations at position R1 of the two most active compounds, 2700.001 and 2700.003, reduced inhibition levels, demonstrating the essential nature not only of the presence of an S-phenyl moiety at this location but also the distance to the scaffold. On the other hand, modifications on the R3, R4, and R5 positions had varied effects, demonstrating the potential for optimization. A correlation analysis between molecular docking values (ΔG) and the dose required for two-fold potentiation of the compounds described in this and the previous studies showed a significant correlation between ΔG values and inhibitory activity.
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  • 文章类型: Journal Article
    目标:发展非小细胞肺癌(NSCLC)的有效治疗方法,特别针对KRASG12C突变,仍然是一个挑战。在这项研究中,我们研究了KRASG12C的小分子抑制剂VT204的治疗潜力,在NSCLC中。方法:实现目标,我们进行了一套全面的实验方法。体外实验涉及VT204对增殖的研究,凋亡,细胞周期动力学,迁移,入侵,以及NCI-H358细胞中RAF/MEK/ERK信号通路。此外,进行体内实验以评估VT204对肿瘤生长的影响。结果:我们证明VT204能有效抑制NCI-H358细胞的增殖,在8μM的浓度下观察到显著的抑制。集落形成测定进一步支持VT204对NCI-H358细胞生长的抑制作用。此外,VT204对NCI-H358细胞的迁移和侵袭能力有显著的抑制作用,表明其作为转移抑制剂的潜力。机制研究表明,VT204诱导NCI-H358细胞凋亡和G2M期细胞周期停滞。此外,VT204调节RAF/MEK/ERK信号通路,导致ERK磷酸化降低。使用异种移植模型的体内研究证实了VT204对NCI-H358肿瘤生长的抑制作用。结论:这些发现强调VT204是靶向KRASG12C突变的NSCLC的有希望的治疗候选药物。
    Objectives: The development of effective treatments for non-small cell lung cancer (NSCLC), particularly targeting the KRASG12C mutation, remains a challenge. In this study, we investigated the therapeutic potential of VT204, a small molecule inhibitor of KRASG12C, in NSCLC. Methods: To achieve the objectives, we conducted a comprehensive set of experimental methods. In vitro experiments involved the investigation of VT204 on proliferation, apoptosis, cell cycle dynamics, migration, invasion, and on the RAF/MEK/ERK signaling pathway in NCI-H358 cells. In addition, in vivo experiments were performed to evaluate the influence of VT204 on tumor growth. Results: We demonstrated that VT204 effectively suppressed cell proliferation in NCI-H358 cells, with significant inhibition observed at a concentration of 8 μM. Colony formation assays further supported the inhibitory effect of VT204 on NCI-H358 cell growth. Moreover, VT204 exhibited notable effects on suppressing migration and invasion capacities of NCI-H358 cells, indicating its potential as a metastasis-inhibiting agent. Mechanistic investigations revealed that VT204 induced apoptosis and G2M-phase cell cycle arrest in NCI-H358 cells. Additionally, VT204 modulated the RAF/MEK/ERK signaling pathway, leading to reduced phosphorylation of ERK. In vivo studies using xenograft models confirmed the inhibitory effect of VT204 on NCI-H358 tumor growth. Conclusion: These findings highlight VT204 as a promising therapeutic candidate for NSCLC targeting the KRASG12C mutation.
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  • 文章类型: Journal Article
    设计了一系列新型的2-芳基甲氧基-4-(2-氟甲基-联苯-3-基甲氧基)苄胺衍生物,合成,并评估了其作为PD-1/PD-L1抑制剂的体外和体内抗肿瘤作用。首先,使用均相时间分辨荧光(HTRF)分析评估了这些化合物阻断PD-1/PD-L1免疫检查点的能力.两种化合物可以强烈阻断PD-1/PD-L1的相互作用,IC50值小于10nM,特别是,化合物HD10通过抑制PD-1/PD-L1相互作用表现出显著的临床潜力,IC50值为3.1nM。进一步的微尺度热泳(MST)分析表明,HD10与PD-L1蛋白具有很强的相互作用。与PD-L1蛋白复合物中的HD10的共晶体结构(2.7µ)分析显示,该化合物与目标PD-L1二聚体之间具有很强的亲和力。这为进一步的体内外研究提供了坚实的理论基础。接下来,一个典型的基于细胞的实验表明,HD10可以显著阻止hPD-1293T细胞与人重组PD-L1蛋白的相互作用,有效恢复T细胞功能,并以剂量依赖性方式促进IFN-γ分泌。此外,HD10在PD-1/PD-L1人源化小鼠模型中有效抑制肿瘤生长(TGI=57.31%),无明显毒性。流式细胞术,qPCR,和免疫组织化学数据表明,HD10通过激活体内免疫系统来抑制肿瘤生长。基于这些结果,HD10似乎是一个有希望的临床候选药物,需要进一步研究.
    A series of novel 2-arylmethoxy-4-(2-fluoromethyl-biphenyl-3-ylmethoxy) benzylamine derivatives was designed, synthesized, and evaluated for their antitumor effects as PD-1/PD-L1 inhibitors both in vitro and in vivo. Firstly, the ability of these compounds to block the PD-1/PD-L1 immune checkpoint was assessed using the homogeneous time-resolved fluorescence (HTRF) assay. Two of the compounds can strongly block the PD-1/PD-L1 interaction, with IC50 values of less than 10 nM, notably, compound HD10 exhibited significant clinical potential by inhibiting the PD-1/PD-L1 interaction with an IC50 value of 3.1 nM. Further microscale thermophoresis (MST) analysis demonstrated that HD10 had strong interaction with PD-L1 protein. Co-crystal structure (2.7 Å) analysis of HD10 in complex with the PD-L1 protein revealed a strong affinity between the compound and the target PD-L1 dimer. This provides a solid theoretical basis for further in vitro and in vivo studies. Next, a typical cell-based experiment demonstrated that HD10 could remarkably prevent the interaction of hPD-1 293 T cells from human recombinant PD-L1 protein, effectively restoring T cell function, and promoting IFN-γ secretion in a dose-dependent manner. Moreover, HD10 was effective in suppressing tumor growth (TGI = 57.31 %) in a PD-1/PD-L1 humanized mouse model without obvious toxicity. Flow cytometry, qPCR, and immunohistochemistry data suggested that HD10 inhibits tumor growth by activating the immune system in vivo. Based on these results, it seems likely that HD10 is a promising clinical candidate that should be further investigated.
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  • 文章类型: Journal Article
    布鲁顿的酪氨酸激酶(BTK)抑制剂彻底改变了B细胞淋巴瘤如慢性淋巴细胞白血病(CLL)的治疗前景。一流的BTK抑制剂依鲁替尼最近通过更安全但仍面临抗性突变挑战的共价BTK抑制剂获得了成功。非共价BTK抑制剂pirtobrutinib最近被批准用于复发和难治性CLL,以及非共价BTK抑制剂是否会取代共价BTK抑制剂作为单独或组合的前期治疗选择将被确定。同时,新的BTK抑制剂和BTK降解剂正在争夺其在B细胞癌和自身免疫性疾病的潜在未来格局中的地位。这篇综述将涵盖BTK抑制剂开发的最新进展,以及根据这些最新发现,该领域正在发展的领域。
    Bruton\'s tyrosine kinase (BTK) inhibitors have revolutionized the treatment landscape for B cell lymphomas such as chronic lymphocytic leukemia (CLL). The first-in-class BTK inhibitor ibrutinib has recently been succeeded by covalent BTK inhibitors that are safer but still face challenges of resistance mutations. The noncovalent BTK inhibitor pirtobrutinib was recently approved for relapsed and refractory CLL, and whether noncovalent BTK inhibitors will supplant covalent BTK inhibitors as upfront treatment options either alone or in combination will be determined. Meanwhile, newer BTK inhibitors and BTK degraders are vying for their place in the potential future landscape of B cell cancers as well as autoimmune diseases. This review will cover the latest progress in BTK inhibitor development and where the field is moving in light of these recent discoveries.
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  • 文章类型: Journal Article
    记忆B细胞提供保护的一种方式是通过快速分化成浆细胞。浆细胞在提供对病原体的长期保护方面至关重要;然而,在抗体介导的自身免疫的情况下,它们也可能对健康有害。因此,调节浆细胞存活的化合物已被用于治疗干预。体外浆细胞存活的研究以前受到血液中浆细胞频率低的限制。在这里,我们描述了一种新的离体培养系统,每个条件仅需要3000-5000个细胞。该方法允许评估源自血液的人浆细胞存活,并且可以评估小分子抑制剂对浆细胞活力的影响。
    One way memory B cells provide protection is by rapidly differentiating into plasma cells. Plasma cells are vital in providing long-term protection against pathogens; however, they can also be detrimental to health in the case of antibody-mediated autoimmunity. Therefore, compounds which modulate the survival of plasma cells have been of interest for therapeutic intervention. Investigation of ex vivo plasma cell survival has previously been limited by the low frequency of plasma cells in the blood. Here we describe a novel ex vivo culture system that only requires 3000-5000 cells per condition. This method permits the assessment of human plasma cell survival derived from blood and can assess the impact of small molecule inhibitors on plasma cell viability.
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