Site-saturation mutation

位点饱和突变
  • 文章类型: Journal Article
    幽门螺杆菌HpfutC,糖基转移酶(GT)11家族糖蛋白,工业2'-岩藻糖基乳糖(2'-FL)生产具有巨大潜力。然而,其有限的催化活性,低表达,和差的热稳定性阻碍了实际应用。在这里,应用半合理设计的位点饱和突变来设计HpfutC的催化活性和热稳定性。6个单点突变体(K102T,R105C,D115S,Y251F,通过突变体文库筛选和有序重组突变,获得了A255G和K282E)和6个具有增强酶活性的组合突变体(V1,V2,V3,V4,V5和V6)。最佳突变体V6,最佳温度为40°C,不是一种依赖金属的酶,然而Mn2+促进了反应。与野生型HpfutC相比,突变体V6在40°C时的比活性增加了2.3倍,半衰期增加了2.18倍,分别。动力学参数表明,突变体V6的Km值比野生酶低34.5%(乳糖)和25.0%(GDP-L-岩藻糖)。而kcat/Km值比野生酶高1.20和1.25倍。Further,三维结构分析表明,高刚性结构,形成新的氢键,疏水性残基的增加和表面静电荷的重新分布可能是酶活性和热稳定性提高的原因。本研究采用的策略对解决HpfutC的技术瓶颈和2'-FL的工业应用具有重要意义。
    Helicobacter pylori HpfutC, a glycosyltransferase (GT) 11 family glycoprotein, has great potential for industrial 2\'-fucosyllactose (2\'-FL) production. However, its limited catalytic activity, low expression, and poor thermostability hinder practical applications. Herein, a semi-rationally designed site-saturation mutation was applied to engineer the catalytic activity and thermostability of HpfutC. The 6 single point mutants (K102T, R105C, D115S, Y251F, A255G and K282E) and 6 combined mutants (V1, V2, V3, V4, V5, and V6) with enhanced enzyme activity were obtained by mutant library screening and ordered recombination mutation. The optimal mutant V6, with an optimum temperature of 40 °C, was not a metal-dependent enzyme, yet the reaction was facilitated by Mn2+. Compared to wild-type HpfutC, mutant V6 exhibited a 2.3-fold increase in specific activity and a 2.18-fold increase in half-life at 40 °C, respectively. Kinetic parameters indicated that the Km values of mutant V6 were 34.5 % (lactose) and 25.0 % (GDP-L-fucose) lower than those of the wild enzyme, whereas the kcat/Km values were 1.20 and 1.25-fold higher than those of the wild enzyme. Further, 3D-structure analysis revealed that the highly rigid structure, formation of new hydrogen bonds, increased hydrophobic residues and redistribution of electrostatic charges on the surface may be responsible for the elevated enzyme activity and thermostability. The strategy adopted in this study is of great significance to the solution of the technical bottleneck of HpfutC and the industrial application of 2\'-FL.
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  • 文章类型: Journal Article
    γ-氨基丁酸酯(GABA)是通过谷氨酸脱羧酶(GAD)使L-谷氨酸脱羧合成的重要生物活性化合物。在这项研究中,通过共有诱变构建来自短乳杆菌的GAD的稳定变体。使用共识查找器(http://cbs-kazlab。oit.umn.edu/),鉴定了同源家族成员中具有最普遍氨基酸(超过60%阈值)的八个位置。随后,使用定点诱变将这八个残基分别突变以匹配共有序列。与野生型相比,T383K变体在单个变体中显示出最大的热稳定性变化,半失活温度(T5015)升高3.0°C,在55°C下半衰期(t1/2)提高1.7倍,在37°C时t1/2提高了1.2倍,分别,而其催化效率(kcat/Km)降低。为了获得热稳定性和催化活性均得到改善的突变体,我们在T383进行了位点饱和突变.值得注意的是,突变体T383V和T383G的热稳定性和kcat/Km比野生型增加。本研究不仅强调了一致诱变对提高GAD热稳定性的价值,而且为研究其他酶的热稳定性提供了有力的指导。
    γ-Aminobutyrate (GABA) is an important bioactive compound synthesized through decarboxylation of L-glutamate by the glutamate decarboxylase (GAD). In this study, stabilized variants of the GAD from Lactobacillus brevis were constructed by consensus mutagenesis. Using Consensus Finder ( http://cbs-kazlab.oit.umn.edu/ ), eight positions with the most prevalent amino acid (over 60% threshold) among the homologous family members were identified. Subsequently, these eight residues were individually mutated to match the consensus sequence using site-directed mutagenesis. Compared to the wild-type, T383K variant displayed the largest shift in thermostability among the single variants, with a 3.0 °C increase in semi-inactivation temperature (T5015), a 1.7-fold improvement of half-life (t1/2) at 55 °C, and a 1.2-fold improvement of t1/2 at 37 °C, respectively, while its catalytic efficiency (kcat/Km) was reduced. To obtain the mutant with improvement in both thermostability and catalytic activity, we performed a site-saturation mutation at T383. Notably, mutants T383V and T383G exhibited an increasement in thermostability and kcat/Km than that of wild-type. This study not only emphasizes the value of consensus mutagenesis for improving the thermostability of GAD but also sheds a powerful guidance to study the thermal stability of other enzymes.
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  • 文章类型: Journal Article
    To improve the catalytic activity of atrazine chlorohydrolase (AtzA), amino acid residues involved in substrate binding (Gln71) and catalytic efficiency (Val12, Ile393, and Leu395) were targeted to generate site-saturation mutagenesis libraries. Seventeen variants were obtained through Haematococcus pluvialis-based screening, and their specific activities were 1.2-5.2-fold higher than that of the wild type. For these variants, Gln71 tended to be substituted by hydrophobic amino acids, Ile393 and Leu395 by polar ones, especially arginine, and Val12 by alanine, respectively. Q71R and Q71M significantly decreased the Km by enlarging the substrate-entry channel and affecting N-ethyl binding. Mutations at sites 393 and 395 significantly increased the kcat/Km, probably by improving the stability of the dual β-sheet domain and the whole enzyme, owing to hydrogen bond formation. In addition, the contradictory relationship between the substrate affinity improvement by Gln71 mutation and the catalytic efficiency improvement by the dual β-sheet domain modification was discussed.
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