Semi-automatic approach

  • 文章类型: Journal Article
    目的:建立用于双侧矢状面劈开截骨(BSSO)后截骨部位体积评估的分析管道。
    方法:之前进行了锥形束计算机断层扫描(CBCT),紧接在BSSO之后,手术后6-12个月。每个截骨间隙数据集的图像分割由四名医生手动执行,并与半自动分割方法进行比较。
    结果:纳入5例患者,共10个截骨间隙。使用手动分割方法时,单个患者的平均类间相关系数(ICC)为0.782,标准偏差为0.080。然而,解剖部位和时间点评估的平均ICC分别为0.214,提示在每个评分者的人工分割中存在较大的偏差.标准偏差为0.355,进一步突出了变化的程度。相比之下,半自动分割方法的平均ICC为0.491,标准偏差为0.365,这表明与手动分割方法相比,操作者之间的一致性相对较高.此外,半自动方法中截骨间隙的体积在每个部位都显示出与手动分割方法相同的趋势,但偏差较小。
    结论:本研究中开发的半自动方法被证明是有效的标准化方法,具有高重复性。这种图像分析方法可以帮助量化BSSO及以后的骨愈合进展,最终有助于早期识别愈合迟缓的患者。
    OBJECTIVE: To establish an analysis pipeline for the volumetric evaluation of the osteotomy site after bilateral sagittal split osteotomy (BSSO).
    METHODS: Cone-beam computed tomography (CBCT) was performed before, directly after BSSO, and 6-12 months after surgery. Image segmentations of each osteotomy gap data set were performed manually by four physicians and were compared to a semi-automatic segmentation approach.
    RESULTS: Five patients with a total of ten osteotomy gaps were included. The mean interclass correlation coefficient (ICC) of individual patients was 0.782 and the standard deviation 0.080 when using the manual segmentation approach. However, the mean ICC of the evaluation of anatomical sites and time points separately was 0.214, suggesting a large range of deviation within the manual segmentation of each rater. The standard deviation was 0.355, further highlighting the extent of the variation. In contrast, the semi-automatic approach had a mean ICC of 0.491 and a standard deviation of 0.365, which suggests a relatively higher agreement among the operators compared to the manual segmentation approach. Furthermore, the volume of the osteotomy gap in the semi-automatic approach showed the same tendency in every site as the manual segmentation approach, but with less deviation.
    CONCLUSIONS: The semi-automatic approach developed in the present study proved to be valid as a standardised method with high repeatability. Such image analysis methods could help to quantify the progression of bone healing after BSSO and beyond, eventually facilitating the earlier identification of patients with retarded healing.
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  • 文章类型: Journal Article
    口咽鳞状细胞癌(OPSCC)的分割需要进行放射治疗计划。我们旨在使用卷积神经网络(CNN)在MRI上分割OPSCC的原发性肿瘤。我们研究了多个MRI序列作为输入的效果,并提出了一种半自动肿瘤分割方法,有望节省临床时间。
    我们纳入了2010年至2015年的171例OPSCC患者。对于所有患者,以下MRI序列可用:T1加权,注射钆后的T2加权和3DT1加权。我们使用整个图像和减少上下文的图像来训练3DUNet,只考虑肿瘤周围剪贴板中的信息。我们使用MRI序列的不同组合作为输入来比较性能。最后,测试了两名人类观察者在肿瘤周围定义剪贴板的半自动方法。用Sørensen-Dice系数(Dice)测量分割性能,第95个豪斯多夫距离(HD)和平均表面距离(MSD)。
    3DUNet以全上下文和所有序列作为输入进行训练,得出的中值骰子为0.55,HD为8.7mm,MSD为2.7mm。合并所有MRI序列比使用单个序列更好。以所有序列作为输入的半自动方法产生了显著更好的性能(p<0.001):0.74的中值Dice,4.6mm的HD和1.2mm的MSD。
    减少肿瘤周围的上下文量并结合多个MRI序列提高了分割性能。半自动方法是准确且临床可行的。
    UNASSIGNED: Segmentation of oropharyngeal squamous cell carcinoma (OPSCC) is needed for radiotherapy planning. We aimed to segment the primary tumor for OPSCC on MRI using convolutional neural networks (CNNs). We investigated the effect of multiple MRI sequences as input and we proposed a semi-automatic approach for tumor segmentation that is expected to save time in the clinic.
    UNASSIGNED: We included 171 OPSCC patients retrospectively from 2010 until 2015. For all patients the following MRI sequences were available: T1-weighted, T2-weighted and 3D T1-weighted after gadolinium injection. We trained a 3D UNet using the entire images and images with reduced context, considering only information within clipboxes around the tumor. We compared the performance using different combinations of MRI sequences as input. Finally, a semi-automatic approach by two human observers defining clipboxes around the tumor was tested. Segmentation performance was measured with Sørensen-Dice coefficient (Dice), 95th Hausdorff distance (HD) and Mean Surface Distance (MSD).
    UNASSIGNED: The 3D UNet trained with full context and all sequences as input yielded a median Dice of 0.55, HD of 8.7 mm and MSD of 2.7 mm. Combining all MRI sequences was better than using single sequences. The semi-automatic approach with all sequences as input yielded significantly better performance (p < 0.001): a median Dice of 0.74, HD of 4.6 mm and MSD of 1.2 mm.
    UNASSIGNED: Reducing the amount of context around the tumor and combining multiple MRI sequences improved the segmentation performance. A semi-automatic approach was accurate and clinically feasible.
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