Secondary protein structure

  • 文章类型: Journal Article
    在这项工作中,用商业豌豆分离蛋白(PPI)制备分散体,并进行不同的(i)高压均质化(HPH)强度(0-200MPa)(室温,pH7)或(ii)环境条件(60°C,pH7或pH12)以产生具有独特蛋白质分子和微观结构特征的分散体,影响蛋白质的溶解度。此外,按照静态INFOGEST体外消化方案分析蛋白质消化。一般来说,均质化处理压力的增加与粒径的减小和蛋白质消化的增强有关。更具体地说,未经历HPH(0MPa)的分散体以及在60°C下处理的分散体,pH值为7,具有高度相似的微观结构,由具有壳状结构的大不规则颗粒(10-500µm)组成,并表现出低溶解度(约15%和28%,分别),导致有限的蛋白水解(35%和42%,分别)。相比之下,在100MPa下对分散体进行HPH处理,在60°C下对分散体进行处理,pH12也具有类似的微观结构,具有小且均匀的颗粒(<1µm),并表现出相对良好的溶解度(54%和31%,分别),这导致蛋白质消化水平提高(87%和74%,分别)。这项研究强调了食品加工对常量营养素(微)结构以及进一步的胃肠道稳定性和功能性的潜力。
    In this work, dispersions were prepared with commercial pea protein isolate (PPI) and subjected to different (i) high pressure homogenization (HPH) intensities (0 - 200 MPa) (room temperature, pH 7) or (ii) environmental conditions (60 °C, pH 7 or pH 12) to generate dispersions with distinct protein molecular and microstructural characteristics, impacting protein solubility. Besides, protein digestion was analyzed following the static INFOGEST in vitro digestion protocol. Generally, increasing pressure of the homogenization treatment was linked with decreasing particle sizes and enhanced protein digestion. More specifically, the dispersion that did not undergo HPH (0 MPa) as well as the dispersion treated at 60 °C, pH 7, had highly similar microstructures, consisting of large irregular particles (10 - 500 µm) with shell-like structures, and exhibited low solubility (around 15 % and 28 %, respectively), which resulted in limited proteolysis (35 % and 42 %, respectively). In contrast, the dispersion subjected to HPH at 100 MPa and the dispersion treated at 60 °C, pH 12 also had similar microstructures with small and homogeneous particles (<1 µm), and exhibited relatively good solubility (54 % and 31 %, respectively), which led to enhanced protein digestion levels (87 % and 74 %, respectively). This study highlights the potential of food processing on macronutrient (micro)structure and further gastrointestinal stability and functionality.
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  • 文章类型: Journal Article
    儿童肥胖(CO)对三分之一的儿童产生负面影响,是健康和福祉的第四大最常见风险因素。明确肥胖发展过程中发生的分子和结构修饰对于了解其进展和设计有效的治疗方法至关重要。该研究确实是作为正在进行的CO治疗试验的一部分进行的,其中数据来自非药物治疗干预措施开始前诊断为CO的儿童.我们的主要目的是分析与儿童肥胖相关的生化变化,特别关注脂质的浓度,脂蛋白,胰岛素,和葡萄糖。通过比较CO组(n=60)和健康儿童对照组(n=43)之间的这些参数,我们试图阐明CO患者体内存在的代谢差异。我们的生化分析揭示了较低的LDL(低密度脂蛋白)水平和较高的HDL(高密度脂蛋白),胆固醇,甘油三酯,胰岛素,与对照组相比,CO个体的葡萄糖水平。为了更详细地审查这些变化,我们对血清样品进行了傅里叶变换红外(FTIR)光谱。我们的结果表明CO血清中的脂质和蛋白质水平升高,与对照组相比。此外,我们注意到葡萄糖振动的结构变化,β-sheet,CO组的脂质。FTIR技术,结合主成分分析(PCA),证明了CO和对照之间的明显区别,特别是在对应于酰胺和脂质的FTIR区域中。皮尔逊测试显示,生化数据和FTIR光谱之间的相关性比二阶导数FTIR光谱之间的相关性更强。总的来说,我们的研究为CO中发生的分子和结构变化提供了有价值的见解。
    Childhood obesity (CO) negatively affects one in three children and stands as the fourth most common risk factor of health and well-being. Clarifying the molecular and structural modifications that transpire during the development of obesity is crucial for understanding its progression and devising effective therapies. The study was indeed conducted as part of an ongoing CO treatment trial, where data were collected from children diagnosed with CO before the initiation of non-drug treatment interventions. Our primary aim was to analyze the biochemical changes associated with childhood obesity, specifically focusing on concentrations of lipids, lipoproteins, insulin, and glucose. By comparing these parameters between the CO group (n = 60) and a control group of healthy children (n = 43), we sought to elucidate the metabolic differences present in individuals with CO. Our biochemical analyses unveiled lower LDL (low-density lipoproteins) levels and higher HDL (high-density lipoproteins), cholesterol, triglycerides, insulin, and glucose levels in CO individuals compared to controls. To scrutinize these changes in more detail, we employed Fourier transform infrared (FTIR) spectroscopy on the serum samples. Our results indicated elevated levels of lipids and proteins in the serum of CO, compared to controls. Additionally, we noted structural changes in the vibrations of glucose, β-sheet, and lipids in CO group. The FTIR technique, coupled with principal component analysis (PCA), demonstrated a marked differentiation between CO and controls, particularly in the FTIR region corresponding to amide and lipids. The Pearson test revealed a stronger correlation between biochemical data and FTIR spectra than between 2nd derivative FTIR spectra. Overall, our study provides valuable insights into the molecular and structural changes occurring in CO.
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  • 文章类型: Journal Article
    拉曼光谱用于研究I型单纯疱疹病毒(HSV-1)和EB病毒(EBV)之间的结构差异。首先收集拉曼光谱,并对相应病毒体的簇进行统计有效性分析,并根据主成分分析(PCA)进行分析。然后,计算平均光谱,并应用机器学习方法将它们反卷积到子带分量中,以便进行比较分析。拉曼结果显示两种病毒株之间存在明显的结构差异,这主要可以追溯到EBV病毒粒子的糖蛋白中大量存在碳水化合物。还可以记录对病毒体/环境界面处的pH敏感的选定酪氨酸和色氨酸拉曼谱带的明显差异。根据观察到的光谱差异,已知生物分子的拉曼特征被解释为将结构差异与两种菌株的病毒功能联系起来。本研究证实了拉曼光谱在病毒学和分子水平上回答结构问题的独特能力,尽管病毒结构复杂,它能够轻松可靠地区分不同的病毒类型和毒株。
    Raman spectroscopy was applied to study the structural differences between herpes simplex virus Type I (HSV-1) and Epstein-Barr virus (EBV). Raman spectra were first collected with statistical validity on clusters of the respective virions and analyzed according to principal component analysis (PCA). Then, average spectra were computed and a machine-learning approach applied to deconvolute them into sub-band components in order to perform comparative analyses. The Raman results revealed marked structural differences between the two viral strains, which could mainly be traced back to the massive presence of carbohydrates in the glycoproteins of EBV virions. Clear differences could also be recorded for selected tyrosine and tryptophan Raman bands sensitive to pH at the virion/environment interface. According to the observed spectral differences, Raman signatures of known biomolecules were interpreted to link structural differences with the viral functions of the two strains. The present study confirms the unique ability of Raman spectroscopy for answering structural questions at the molecular level in virology and, despite the structural complexity of viral structures, its capacity to readily and reliably differentiate between different virus types and strains.
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  • 文章类型: Journal Article
    Anoctamin2(ANO2或TMEM16B),钙激活的氯化物通道(CaCC),在整个中枢神经系统的神经元中扮演不同的角色。在海马神经元中,ANO2以相对较快的动力学使动作电位宽度变窄并减少突触后去极化,对Ca2的敏感性很高。在其他大脑区域,包括丘脑,ANO2以相对较慢的动力学介导对Ca2的低敏感性的活性依赖性尖峰频率适应。该通道如何响应大范围的Ca2+水平仍不清楚。我们假设ANO2的剪接变体可能有助于其独特的Ca2敏感性,因此它的不同的神经元功能。我们确定了在小鼠大脑中表达的两种ANO2同工型,并检查了它们的电生理特性:同工型1(由外显子1a的剪接变体编码,2、4和14)在海马中表达,而同工型2(由具有外显子1a的剪接变体编码,2和4)在整个大脑中广泛表达,包括大脑皮层和丘脑,并且具有比同工型1更慢的钙依赖性活化电流。计算模型显示,同工型1的第一个胞内环的二级结构从胞质溶胶形成钙结合位点的入口腔,其相对大于同工型2。这种差异提供了结构证据,证明同工型2参与调节尖峰频率,而同工型1参与塑造动作电位的持续时间和减少突触后去极化。我们的研究强调了特定ANO2剪接变体在调节神经元功能中的作用和分子机制。
    Anoctamin 2 (ANO2 or TMEM16B), a calcium-activated chloride channel (CaCC), performs diverse roles in neurons throughout the central nervous system. In hippocampal neurons, ANO2 narrows action potential width and reduces postsynaptic depolarization with high sensitivity to Ca2+ at relatively fast kinetics. In other brain regions, including the thalamus, ANO2 mediates activity-dependent spike frequency adaptations with low sensitivity to Ca2+ at relatively slow kinetics. How this same channel can respond to a wide range of Ca2+ levels remains unclear. We hypothesized that splice variants of ANO2 may contribute to its distinct Ca2+ sensitivity, and thus its diverse neuronal functions. We identified two ANO2 isoforms expressed in mouse brains and examined their electrophysiological properties: isoform 1 (encoded by splice variants with exons 1a, 2, 4, and 14) was expressed in the hippocampus, while isoform 2 (encoded by splice variants with exons 1a, 2, and 4) was broadly expressed throughout the brain, including in the cortex and thalamus, and had a slower calcium-dependent activation current than isoform 1. Computational modeling revealed that the secondary structure of the first intracellular loop of isoform 1 forms an entrance cavity to the calcium-binding site from the cytosol that is relatively larger than that in isoform 2. This difference provides structural evidence that isoform 2 is involved in accommodating spike frequency, while isoform 1 is involved in shaping the duration of an action potential and decreasing postsynaptic depolarization. Our study highlights the roles and molecular mechanisms of specific ANO2 splice variants in modulating neuronal functions.
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  • 文章类型: Journal Article
    Trichonephila蜘蛛的牵引丝在各种应用中引起了人们的关注。牵引丝最令人着迷的用途之一是在神经再生中作为神经引导导管的腔内填充物。事实上,填充蜘蛛丝的导管可以测量自体神经移植,但是丝纤维成功背后的原因尚不清楚。在这项研究中,用乙醇对可食三环的牵引纤维进行了灭菌,UV辐射,和高压灭菌和所得材料的特性进行了表征,关于丝的神经再生的适用性。在体外将大鼠雪旺氏细胞(rSC)接种在这些丝上,并研究了它们的迁移和增殖,以指示纤维支持神经生长的能力。发现rSC在乙醇处理的纤维上迁移更快。为了阐明这种行为背后的原因,纤维的形态,表面化学,二级蛋白质结构,结晶度和力学性能进行了研究。结果表明,拖丝的刚度及其组成的协同作用对rSCs的迁移具有至关重要的影响。这些发现为理解SC对丝纤维的反应以及有针对性地生产用于再生医学应用的合成替代品铺平了道路。
    Dragline silk of Trichonephila spiders has attracted attention in various applications. One of the most fascinating uses of dragline silk is in nerve regeneration as a luminal filling for nerve guidance conduits. In fact, conduits filled with spider silk can measure up to autologous nerve transplantation, but the reasons behind the success of silk fibers are not yet understood. In this study dragline fibers of Trichonephila edulis were sterilized with ethanol, UV radiation, and autoclaving and the resulting material properties were characterized with regard to the silk\'s suitability for nerve regeneration. Rat Schwann cells (rSCs) were seeded on these silks in vitro and their migration and proliferation were investigated as an indication for the fiber\'s ability to support the growth of nerves. It was found that rSCs migrate faster on ethanol treated fibers. To elucidate the reasons behind this behavior, the fiber\'s morphology, surface chemistry, secondary protein structure, crystallinity, and mechanical properties were studied. The results demonstrate that the synergy of dragline silk\'s stiffness and its composition has a crucial effect on the migration of rSCs. These findings pave the way towards understanding the response of SCs to silk fibers as well as the targeted production of synthetic alternatives for regenerative medicine applications.
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  • 文章类型: Journal Article
    儿童肥胖是一个全球性问题,导致可能导致代谢综合征并增加糖尿病风险的不同医疗条件,血脂异常,高血压,和未来健康中的心血管疾病。代谢紊乱是人体化学过程的结果。化学成分的变化可以通过拉曼光谱测定。因此,在这项研究中,我们测量了从肥胖儿童收集的血液,以显示肥胖疾病引起的化学变化。此外,我们还将显示特征拉曼峰/区域,这可以作为肥胖的标志,不是其他代谢综合征。肥胖儿童的血糖水平较高,蛋白质,和脂质比对照。此外,人们注意到,对照组患者中CO和C-H的比值为0.23,肥胖儿童为0.31,以及酰胺II和酰胺I之间的比率在对照组为0.72,在肥胖症为1.15,这表明儿童肥胖中这两个部分的不平衡。PCA与判别分析表明,选择性,拉曼光谱在儿童肥胖和健康儿童之间的区别特异性为93%至100%。有一个增加的风险代谢变化的儿童肥胖与较高的葡萄糖水平,脂质,和肥胖儿童的蛋白质。此外,蛋白质和脂质官能团与葡萄糖之间的比例存在差异,酰胺II,和酰胺I振动作为肥胖的标志。这项研究的结果为肥胖儿童蛋白质结构和脂质组成的潜在改变提供了有价值的见解。强调考虑超越传统人体测量的代谢变化的重要性,测量。
    Obesity in children is a global problem, leading to different medical conditions that may contribute to metabolic syndrome and increase the risk of diabetes, dyslipidemia, hypertension, and cardiovascular diseases in future health. Metabolic disorders are the results of the body\'s chemical process. The changes in the chemical compositions could be determined by Raman spectroscopy. Therefore, in this study, we measured blood collected from children with obesity to show chemical changes caused by obesity disease. Moreover, we will also show characteristic Raman peaks/regions, which could be used as a marker of obesity, not other metabolic syndromes. Children with obesity had higher glucose levels, proteins, and lipids than the control ones. Furthermore, it was noticed that the ratio between CO and C-H is 0.23 in control patients and 0.31 in children with obesity, as well as the ratio between amide II and amide I was 0.72 in control and 1.15 in obesity, which suggests an imbalance in these two fractions in childhood obesity. PCA with discrimination analyses showed that the accuracy, selectivity, and specificity of Raman spectroscopy in differentiation between childhood obesity and healthy children was between 93% and 100%. There is an increased risk of metabolic changes in childhood obesity with higher glucose levels, lipids, and proteins in children with obesity. Also, there were differences in the ratio between proteins and lipids functional groups and glucose, amide II, and amide I vibrations as a marker of obesity. The results of the study offer valuable insights into potential alterations in protein structure and lipid composition in children with obesity, emphasizing the importance of considering metabolic changes beyond traditional anthropometric, measurements.
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  • 文章类型: Journal Article
    茶多酚(TP)作为天然食品添加剂在非发酵冷冻面团(NFFD)中的应用研究较少,结果一直存在争议。因此,本研究调查了不同水平(0,0.5,1和2%)的TP对储存0~4周的NFFD质量的影响.流变特性,水状态,蛋白质,并通过DSC分析了其微观结构,LF-NMR,SDS-PAGE,FT-IR,和SEM,分别。结果表明,在整个冷冻贮藏期间,0.5%TP组延缓了蛋白质的变质,抑制了面团中水分的迁移。此外,0.5%TP基团增强了NFFD的流变性能,稳定了巯基含量和面筋网络中的二级结构。相反,在1%和2%TP组中发现了相反的现象,这可能是由于TP诱导了过量的羟基。总之,我们的结果表明,适当添加TP,但不是过多的金额(>1%),在4周的冷冻储存期间,在维持NFFD的质量方面表现出有益效果。此外,本文阐明了TP在储存过程中影响NFFD蛋白质结构和水状态的机理,并为其在面团食品中的应用提供了新的见解。
    The usage of tea polyphenols (TPs) as a natural food additive into non-fermented frozen dough (NFFD) has rarely been investigated, and results have been controversial. Hence, this study investigated the effect of TPs at various levels (0, 0.5, 1, and 2%) on the quality of NFFD stored from 0 to 4 weeks. The rheological characteristics, water state, protein, and its microstructure were analyzed by DSC, LF-NMR, SDS-PAGE, FT-IR, and SEM, respectively. Results showed that the 0.5% TP group delayed the deterioration of protein and inhibited the water migration in dough throughout the whole frozen storage period. In addition, the 0.5% TP group enhanced the rheological properties of NFFD and stabilized the sulfhydryl content and the secondary structure in the gluten network. On the contrary, opposite phenomena were found in the 1 and 2% TP groups, which might be due to the induction of excess hydroxyl groups from TPs. In conclusion, our results suggested that a proper addition of TPs, but not an excessive amount (>1%), exhibited beneficial effects in maintaining the quality of NFFD during the 4-week frozen storage. Moreover, this paper elucidated the mechanism of TPs in influencing the protein structure and water state of NFFD during storage and provided new insight into its application in dough-based foods.
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  • 文章类型: Journal Article
    与传统的热室(HR)处理相比,射频(RF)辅助热处理可以显著增强蛋清粉的凝胶硬度。因此,本研究旨在描述射频处理对卵清蛋白凝胶的蛋白质结构和生物功能特性的影响。与传统的HR处理相比,RF辅助热处理后,卵清蛋白的次级蛋白构象没有显着变化。蛋清凝胶的体外胃肠道(GI)消化表明,尽管具有更强大的凝胶网络,但RF处理并未损害消化蛋白酶的可及性。来自蛋清凝胶的GI消化的肽显示卵清蛋白和卵转铁蛋白是产生的大多数独特肽的亲本蛋白,和小的结构差异占这些肽。卵蛋白衍生肽的生物利用度在RF处理后保持不受影响,而不损害GI上皮细胞的活力和完整性。
    Radiofrequency (RF) assisted thermal processing can significantly enhance the gel firmness of egg white powder compared to the traditional hot room (HR) processing. Thus, the present study aims to delineate the impact of RF processing on the proteins\' structure and bio-functional properties of egg white protein gels. The secondary protein conformations of egg white proteins exhibited no significant alteration upon RF-assisted thermal processing over traditional HR processing. In-vitro gastrointestinal (GI) digestion of egg white gels demonstrated that the RF processing did not compromise the accessibility of digestive proteases despite a more robust gel network. Peptides from the GI digest of egg white gel showed that Ovalbumin and Ovotransferrin were the parent proteins of most of the unique peptides generated, and minor structural differences accounted for these peptides. The bioavailability of the egg protein-derived peptides remains unaffected after RF processing without compromising the viability and integrity of the GI epithelial cells.
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  • 文章类型: Journal Article
    使用乳清蛋白分离物喷雾干燥罗氏真菌属KUB-AC5和约翰尼乳杆菌KUNN19-2,蔗糖,和乳清蛋白分离物在130°C和150°C下与蔗糖组合。益生菌膜脂肪酸组成的差异导致细胞膜流动性的差异,细胞损伤,和喷雾干燥期间的细胞存活。乳清分离蛋白和蔗糖的组合提高了罗伊氏乳杆菌KUB-AC5的存活率,其细胞膜更流畅,对应激更敏感。而乳清分离蛋白为L.johnsoniKUNN19-2提供了针对蛋白质二级结构变化的最佳保护。此外,发现膜损伤与微胶囊的保质期之间存在关系。与游离细胞相比,在130°C的入口温度下制备的两种微囊化细胞在模拟胃消化后均显示出增强的存活率。彻底了解喷雾干燥过程中的损伤部位将有助于建立在喷雾干燥过程中维持细胞活力的最佳条件和包封剂配方。storage,和胃肠通道。
    Limosilactobacillus reuteriKUB-AC5 andLactobacillus johnsoniiKUNN19-2 were spray-dried using whey protein isolate, sucrose, and whey protein isolate combined with sucrose at 130 °C and 150 °C. Differences in membrane fatty acid compositions of probiotics led to differences in cell membrane fluidity, cell injury, and cell survival during spray drying. Combination of whey protein isolate and sucrose improved survival of L. reuteriKUB-AC5, whose cell membrane were more fluid and more sensitive to stress, while whey protein isolate provided the best protection for L. johnsoniiKUNN19-2 against changes in protein secondary structures. Moreover, a relationship was found between membrane damage and the shelf-life ofmicrocapsules. Both microencapsulated cells prepared at the inlet temperature of 130 °C showed an enhanced survival upon simulated gastric digestion compared to the free cells. A thorough understanding of injury sites during spray drying will contribute to establishing optimal conditions and encapsulant formulations that maintain the cells\' viability during spray drying, storage, and gastrointestinal passage.
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  • 文章类型: Journal Article
    Human serum albumin (HSA) is the most abundant protein in blood plasma. HSA is involved in the transport of hormones, fatty acids, and some other compounds, maintenance of blood pH, osmotic pressure, and many other functions. Although this protein is well studied, data about its conformational changes upon different denaturation factors are fragmentary and sometimes contradictory. This is especially true for FTIR spectroscopy data interpretation. Here, the effect of various denaturing agents on the structural state of HSA by using FTIR spectroscopy in the aqueous solutions was systematically studied. Our data suggest that the second derivative deconvolution method provides the most consistent interpretation of the obtained IR spectra. The secondary structure changes of HSA were studied depending on the concentration of the denaturing agent during acid, alkaline, and thermal denaturation. In general, the denaturation of HSA in different conditions is accompanied by a decrease in α-helical conformation and an increase in random coil conformation and the intermolecular β-strands. Meantime, some variation in the conformational changes depending on the type of the denaturation agent were also observed. The increase of β-structural conformation suggests that HSA may form amyloid-like aggregates upon the denaturation.
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