Sciurus anomalus

  • 文章类型: Journal Article
    为了保护野生物种,了解景观变化和土地管理如何影响基因流动和运动是很重要的。景观遗传分析提供了一种强大的方法来推断各种景观因素对基因流的影响,从而为保护行动提供信息。波斯松鼠是西亚林地和橡树林中的重要物种,它最近经历了栖息地的丧失和碎片化。我们对伊朗北部扎格罗斯山脉(库尔德斯坦省,Kermanshah,和Ilam),重点评估距离隔离(IBD)和电阻隔离(IBR),使用16个微卫星标记。地理距离和景观特征的作用,包括道路,河流,发达地区,农业和农业,森林,湖泊,人工林,牧场,灌木丛,和不同树冠覆盖的岩石区域,使用基于个体的方法和阻力面建模对遗传结构上的沼泽边缘进行了量化。我们发现了IBD的重要模式,但对森林覆盖率对遗传结构和基因流的影响仅有较弱的支持。地理距离似乎是限制波斯松鼠在该地区扩散的重要因素。当前研究的结果为Zagros橡树森林中的波斯松鼠提供了正在进行的保护计划。
    For the conservation of wild species, it is important to understand how landscape change and land management can affect gene flow and movement. Landscape genetic analyses provide a powerful approach to infer effects of various landscape factors on gene flow, thereby informing conservation actions. The Persian squirrel is a keystone species in the woodlands and oak forests of Western Asia, where it has experienced recent habitat loss and fragmentation. We conducted landscape genetic analyses of individuals sampled in the northern Zagros Mountains of Iran (provinces of Kurdistan, Kermanshah, and Ilam), focusing on the evaluation of isolation by distance (IBD) and isolation by resistance (IBR), using 16 microsatellite markers. The roles of geographical distance and landscape features including roads, rivers, developed areas, farming and agriculture, forests, lakes, plantation forests, rangelands, shrublands, and rocky areas of varying canopy cover, and swamp margins on genetic structure were quantified using individual-based approaches and resistance surface modeling. We found a significant pattern of IBD but only weak support for an effect of forest cover on genetic structure and gene flow. It seems that geographical distance is an important factor limiting the dispersal of the Persian squirrel in this region. The results of the current study inform ongoing conservation programs for the Persian squirrel in the Zagros oak forest.
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  • 文章类型: Case Reports
    岛上生态系统中最成功的捕食者之一是家猫,这被认为是造成众多物种种群减少的原因。这可以通过分析猫的饮食习惯来估计,然而猎物识别并不总是可能的,因此,在需要精确的猎物识别的情况下,最准确的方法之一来自观察狩猎过程。然而,野猫的隐蔽性和对被捕食物种的持续警惕使得观察过程变得困难,尤其是当猎物的种群密度较低时。这里,我们第一次报道这样的案例:一只被伏击的野猫,被杀,并消耗了一种区域濒临灭绝的物种,波斯松鼠.这种偶然的观察发生在松鼠分布的最西端,莱斯沃斯岛,希腊。由于事件的意外,在接下来的日子里,我们估计了松鼠和猫的种群密度。结果表明,松鼠的密度适中,野猫的种群密度几乎高出15倍。出于这个原因,需要采取管理行动,以尽量减少野猫对岛上本地物种的影响。
    One of the most successful predators on island ecosystems is the domestic cat, which is considered responsible for the decline of numerous species\' populations. This can be estimated by the analysis of cats\' dietary habits, yet prey identification is not always possible, and thus, in cases where precise prey identification is required, one of the most accurate methods derives from observing the hunting process. However, the cryptic nature of the feral cats and the constant vigilance of the species that are preyed upon make the observation process difficult, especially when the prey has a low population density. Here, we report for the first time such a case: a feral cat that has ambushed, killed, and consumed a regionally near-threatened species, the Persian squirrel. This incidental observation happened in the squirrel\'s westernmost end of its distribution, the island of Lesvos, Greece. Due to the unexpectedness of the event, in the following days, we estimated both the squirrels\' and cats\' population density. Results showed that while the density of the squirrels is moderate, the population density of the feral cats is almost fifteen times higher. For this reason, management actions need to be taken in an effort to minimize the impacts of feral cats on the native species of the island.
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  • 文章类型: Journal Article
    Sciurus属,Sciuridae家族的一员,在北极地区广泛分布。为了更好地了解该属的有丝分裂基因组特征并揭示其内部系统发育关系,土耳其松鼠的20个完整有丝分裂基因组首次成功测序,其中19个为异常链球菌(从16,505bp到16,510bp),一个为普通链球菌(16,511bp)。两个物种的有丝分裂基因组是AT偏向的。两个物种的所有tRNA都显示出典型的三叶草叶结构,除了tRNASer(AGY)。tRNASerine1(S1)-GCT结构缺少二氢尿苷(DHU)环和茎。基于Sciurinae系统发育的有丝分裂基因组数据集,系统发育分析(贝叶斯推断和最大似然)不支持Sciurus的单生,并提出了S.Sciurini部落中最基本的类群,至少有五个有丝分裂谱系,这也得到了网络分析的支持。使用K2P序列成对距离,异常的五个谱系之间的差异从0.0042(0.42%)到0.0062(0.62%)。除了这个有丝分裂基因组学分析结果,使用CYTB+D-loop数据集的系统发育分析提出了至少9个异常链球菌谱系的存在,这与以前的研究不同。目前的研究表明,使用有丝分裂基因组数据重建土耳其Sciurus的系统发育对于揭示进化关系具有重要价值。
    The genus Sciurus, a member of the family Sciuridae, is widely distributed in the Holarctic region. To better understand mitogenomic characteristics and to reveal internal phylogenetic relationships of the genus, 20 complete mitogenomes of Turkish tree squirrels were successfully sequenced for the first time, including 19 for S. anomalus (from 16,505 bp to 16,510 bp) and one for S. vulgaris (16,511 bp). The mitogenomes of two species were AT-biased. All tRNAs for two species displayed a typical clover-leaf structure, except for tRNASer(AGY). The tRNA Serine1 (S1)-GCT structure lacked the dihydrouridine (DHU) loop and stem. Based on mitogenomic dataset for phylogeny of Sciurinae, phylogenetic analyses (Bayesian Inference and Maximum Likelihood) did not support monophyly of Sciurus and proposed that S. anomalus, the most basal taxa in the Sciurini tribe, had at least five mitogenome lineages, which were also supported by network analysis. The dissimilarities among the five lineages of S. anomalus ranged from 0.0042 (0.42%) to 0.0062 (0.62%) using K2P sequence pairwise distances. In addition to this mitogenomic analysis result, phylogenetic analyses using the CYTB + D-loop dataset proposed the existence of at least nine lineages for S. anomalus, which was different than those of the previous studies. The current study proposed that the use of mitogenomic data for reconstructing the phylogeny of Turkey\'s Sciurus holds an important value for revealing evolutionary relationships.
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  • 文章类型: Journal Article
    The Caucasian Squirrel, Sciurus anomalus, is the only representative of the Sciuridae family in the Eastern Mediterranean region. In this study, the mitochondrial genome of the Sciurus anomalus species was generated, and we investigate its phylogenetic position within the Sciuridae family. The generated mitogenome sequence is 16,234 bp. It is composed of a control region and a conserved set of 37 genes containing 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes.
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  • 文章类型: Journal Article
    This study aimed to evaluate the bacterial flora in the conjunctival fornix of clinically normal Persian squirrels ( Sciurus anomalus). Forty healthy Persian squirrels of equal gender distribution with similar ages (approximately 2 yr) were used for this study. A total of 80 conjunctival swabs were taken from both the right and left eyes of each squirrel for aerobic and anaerobic bacterial identification. A slit-lamp examination was conducted and no external ocular disease was identified. From 80 normal eyes, Staphylococcus spp. comprised the most frequently isolated organism (83%), while Corynebacterium spp. were the second most frequently isolated bacteria (56%), followed by Streptococcus spp. (53%), Chlamydia spp. (33%). Mycoplasma spp. (30%), Pseudomonas spp. (23%), Escherichia coli spp. (12.5%), Enterococcus spp. (7%), and Micrococcus spp. (4%) were also isolated. The most frequently isolated bacteria from the conjunctival fornix of healthy Persian squirrels were Staphylococcus spp. followed by Corynebacterium spp.
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