Sapindaceae家族,包括广泛的植物形式,如草药,葡萄藤,灌木,和树木,广泛分布在热带和亚热带地区。这个家庭包括像荔枝这样重要的经济作物,龙眼,红毛丹,还有ackee.随着近年来基因组技术的广泛应用,已经解码了几个无尾草科植物基因组,导致该领域大量组学数据的积累。数据的激增凸显了对能够存储的统一基因组数据中心的迫切需求,分享,并分析这些数据。这里,我们介绍了SapBase,也就是说,五倍子科基因组数据库。SapBase拥有七个已发布的植物基因组以及其相应的基因结构和功能注释,小RNA注释,基因表达谱,基因途径,和同步块信息。它为基因信息挖掘提供了用户友好的功能,共表达分析,和种间比较基因组分析。此外,通过对荔枝MYB基因的详细生物信息学分析,我们展示了SapBase的广泛能力。因此,SapBase可以作为综合基因组资源和分析平台,用于科学探索皂科物种及其与其他植物的比较研究。
The
Sapindaceae family, encompassing a wide range of plant forms such as herbs, vines, shrubs, and trees, is widely distributed across tropical and subtropical regions. This family includes economically important crops like litchi, longan, rambutan, and ackee. With the wide application of genomic technologies in recent years, several
Sapindaceae plant genomes have been decoded, leading to an accumulation of substantial omics data in this field. This surge in data highlights the pressing need for a unified genomic data center capable of storing, sharing, and analyzing these data. Here, we introduced SapBase, that is, the
Sapindaceae Genome Database. SapBase houses seven published plant genomes alongside their corresponding gene structure and functional annotations, small RNA annotations, gene expression profiles, gene pathways, and synteny block information. It offers user-friendly features for gene information mining, co-expression analysis, and inter-species comparative genomic analysis. Furthermore, we showcased SapBase\'s extensive capacities through a detailed bioinformatic analysis of a MYB gene in litchi. Thus, SapBase could serve as an integrative genomic resource and analysis platform for the scientific exploration of Sapinaceae species and their comparative studies with other plants.