Sample size determination

样本量测定
  • 文章类型: Journal Article
    基于功率分析的样本大小确定(SSD)的传统方法利用相关的固定值或未知参数的初步估计。根据贝叶斯方法,可以使用混合经典贝叶斯方法通过使用先验分布来正式合并未知量的信息或模型不确定性,同时仍在频率论框架中分析数据。在本文中,我们在双臂优势试验中提出了SSD的混合程序,这考虑了统计能力中涉及的未知参数所起的不同作用。因此,使用不同的先验分布来形式化设计期望,并对分析阶段涉及的初步估计的信息或不确定性进行建模。为了说明该方法,我们考虑二进制数据,并使用三个可能的感兴趣参数得出提出的混合标准,即成功比例之间的差异,相对风险的对数和比值比的对数。从文献中获取的数值示例显示了如何实现所提出的过程。
    Traditional methods for Sample Size Determination (SSD) based on power analysis exploit relevant fixed values or preliminary estimates for the unknown parameters. A hybrid classical-Bayesian approach can be used to formally incorporate information or model uncertainty on unknown quantities by using prior distributions according to the Bayesian approach, while still analysing the data in a frequentist framework. In this paper, we propose a hybrid procedure for SSD in two-arm superiority trials, that takes into account the different role played by the unknown parameters involved in the statistical power. Thus, different prior distributions are used to formalize design expectations and to model information or uncertainty on preliminary estimates involved at the analysis stage. To illustrate the method, we consider binary data and derive the proposed hybrid criteria using three possible parameters of interest, i.e. the difference between proportions of successes, the logarithm of the relative risk and the logarithm of the odds ratio. Numerical examples taken from the literature are presented to show how to implement the proposed procedure.
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  • 文章类型: Journal Article
    贝叶斯统计在推动医疗科学发展方面发挥着关键作用,监管者,和利益相关者评估新疗法的安全性和有效性,干预措施,和医疗程序。贝叶斯框架比经典框架具有独特的优势,特别是当将先前的信息与高质量的外部数据结合到新的试验中时,例如历史数据或其他共同数据源。近年来,由于其灵活性和为决策提供有价值的见解的能力,使用贝叶斯统计的监管提交显著增加,解决临床试验频率不足的现代复杂性。对于监管提交,公司通常需要考虑贝叶斯分析策略的频繁经营特征,不管设计的复杂性。特别是,重点是所有现实替代方案的I型频繁错误率和功率。本教程综述旨在全面概述贝叶斯统计在样本量确定中的使用,控制I型错误率,多重性调整,外部数据借用,等。,在临床试验的监管环境中。提供了贝叶斯样本量确定的基本概念和说明性示例,作为研究人员的宝贵资源,临床医生,和统计学家寻求开发更复杂和创新的设计。
    Bayesian statistics plays a pivotal role in advancing medical science by enabling healthcare companies, regulators, and stakeholders to assess the safety and efficacy of new treatments, interventions, and medical procedures. The Bayesian framework offers a unique advantage over the classical framework, especially when incorporating prior information into a new trial with quality external data, such as historical data or another source of co-data. In recent years, there has been a significant increase in regulatory submissions using Bayesian statistics due to its flexibility and ability to provide valuable insights for decision-making, addressing the modern complexity of clinical trials where frequentist trials are inadequate. For regulatory submissions, companies often need to consider the frequentist operating characteristics of the Bayesian analysis strategy, regardless of the design complexity. In particular, the focus is on the frequentist type I error rate and power for all realistic alternatives. This tutorial review aims to provide a comprehensive overview of the use of Bayesian statistics in sample size determination, control of type I error rate, multiplicity adjustments, external data borrowing, etc., in the regulatory environment of clinical trials. Fundamental concepts of Bayesian sample size determination and illustrative examples are provided to serve as a valuable resource for researchers, clinicians, and statisticians seeking to develop more complex and innovative designs.
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  • 文章类型: Journal Article
    排名方法是用于比较两个或多个(独立)组的成熟工具。缺乏用于计算所需的样本大小以检测具有预定义功率的特定替代方案的统计规划方法。在本论文中,我们开发了基于伪秩的多重对比测试的样本量规划的数值算法。我们讨论了估计方案中的处理效果和近似方差参数的不同方法。我们进一步对全局排名方法进行了详细的比较。大量的模拟研究表明,样本量估计器是准确的。一个真实的数据示例说明了这些方法的应用。
    Rank methods are well-established tools for comparing two or multiple (independent) groups. Statistical planning methods for the computing the required sample size(s) to detect a specific alternative with predefined power are lacking. In the present paper, we develop numerical algorithms for sample size planning of pseudo-rank-based multiple contrast tests. We discuss the treatment effects and different ways to approximate variance parameters within the estimation scheme. We further compare pairwise with global rank methods in detail. Extensive simulation studies show that the sample size estimators are accurate. A real data example illustrates the application of the methods.
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  • 文章类型: Journal Article
    测试的标准幂函数的期望值,相对于设计先验分布计算,通常用于评估实验成功的概率。然而,只看期望值可能是还原性的。相反,可以利用由设计先验引起的幂函数的整体概率分布。在本文中,我们考虑对指数族的比例参数进行单边测试,并推导了随机功率的累积分布和密度函数的一般统一表达式。讨论了基于这些函数的替代摘要的样本大小确定标准。该研究揭示了为了构建成功的实验而选择设计之前的相关性。
    The expected value of the standard power function of a test, computed with respect to a design prior distribution, is often used to evaluate the probability of success of an experiment. However, looking only at the expected value might be reductive. Instead, the whole probability distribution of the power function induced by the design prior can be exploited. In this article we consider one-sided testing for the scale parameter of exponential families and we derive general unifying expressions for cumulative distribution and density functions of the random power. Sample size determination criteria based on alternative summaries of these functions are discussed. The study sheds light on the relevance of the choice of the design prior in order to construct a successful experiment.
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  • 文章类型: Journal Article
    随机选择试验通常用于比较可能有益的实验性治疗方法,但他们通常不包括对照组。虽然时间到事件终点通常应用于临床研究,确定此类端点所需样本量的方法,除了指数分布,缺乏。最近,临床试验发生了变化,越来越重视无进展生存期作为主要终点。然而,这种措施的使用通常被限制在特定的时间点的样本量测定和分析。这种方法的改变可能会对临床试验过程产生重大影响,可能会降低辨别治疗组之间差异的能力。在随机试验的样本量计算中,这项调查是在这样的假设下进行的,即事件发生时间端点符合指数,威布尔,或广义指数分布。
    Randomized selection trials are frequently used to compare experimental treatments that have the potential to be beneficial, but they often do not include a control group. While time-to-event endpoints are commonly applied in clinical investigations, methodologies for determining the required sample size for such endpoints, except exponential distribution, are lacking. In recent times, there has been a shift in clinical trials, with a growing emphasis on progression-free survival as a primary endpoint. However, the utilization of this measure has typically been restricted to specific time points for both sample size determination and analysis. This alteration in approach could wield a substantial influence on the clinical trial process, potentially diminishing the capacity to discern variances between treatment groups. In the calculation of sample sizes for randomized trials, this investigation operates under the assumption that the time-to-event endpoint conforms to either an exponential, Weibull, or generalized exponential distribution.
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  • 文章类型: Journal Article
    应包括足够数量的参与者,以充分解决敏感问题调查中的研究兴趣。在本文中,在四个非随机响应模型下,从控制敏感属性患病率的置信区间宽度的角度开发了样本量公式/迭代算法:横向模型,并行模型,泊松项目计数技术模型和负二项项目计数技术模型。与传统的样本量测定方法相反,我们的样本量公式/算法明确包含将置信区间宽度控制在预设范围内的保证概率.根据经验覆盖概率评估了所提出方法的性能,经验保证概率和信心宽度。仿真结果表明,所有公式/算法都是有效的,因此推荐用于实际应用。用一个实际例子来说明所提出的方法。
    A sufficient number of participants should be included to adequately address the research interest in the surveys with sensitive questions. In this paper, sample size formulas/iterative algorithms are developed from the perspective of controlling the confidence interval width of the prevalence of a sensitive attribute under four non-randomized response models: the crosswise model, parallel model, Poisson item count technique model and negative binomial item count technique model. In contrast to the conventional approach for sample size determination, our sample size formulas/algorithms explicitly incorporate an assurance probability of controlling the width of a confidence interval within the pre-specified range. The performance of the proposed methods is evaluated with respect to the empirical coverage probability, empirical assurance probability and confidence width. Simulation results show that all formulas/algorithms are effective and hence are recommended for practical applications. A real example is used to illustrate the proposed methods.
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  • 文章类型: Journal Article
    我们讨论三个问题。在第一部分,我们讨论毛雷尔强调的标准,Bretz,而Xun,警告,它修改了每个比较错误率,不能解决多个测试引起的问题。在第二部分,我们加强了论文中提出的最优性结果,根据我们最近的结果。在第三部分,我们强调了使用权重在实践中可能发挥的潜在重要作用,并讨论了分配权重在损益函数中传达重要性的困难,特别是它涉及多个端点。
    We discuss three issues. In the first part, we discuss the criteria emphasized by Maurer, Bretz, and Xun, warning that it modifies the per comparison error rate that does not address the concerns raised by multiple testing. In the second part, we strengthen the optimality results developed in the paper, based on our recent results. In the third part, we highlight the potentially important role that the use of weights may have in practice and discuss the difficulties in assigning weights that convey the importance in the gain and loss functions, especially as it pertains to multiple endpoints.
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  • 文章类型: Journal Article
    两个(独立的)样品的样品大小计算被很好地建立并应用于(预)临床研究。规划几个样品时,这在,例如,临床前研究,基于方差分析方法的样本量规划工具是可用的。由于这些方法的潜在效应大小通常难以解释和提供样本量规划,我们使用多个对比测试程序,在参数(在正态假设下)和非参数设计中使用钢型测试进行样本量计算。由于在替代和方差异质性下,测试统计量的确切分布是未知的,我们使用近似解。此外,由于没有样本大小的封闭公式,我们使用数值近似来计算它们。最后进行了广泛的模拟研究,以评估近似的质量。事实证明,这些方法是准确的,因为多个对比度测试程序达到目标功率,以通过计算的样本量来检测感兴趣的替代方案。开发的程序是计划(预)临床试验与几个样品的有价值的工具,并且可以在公开可用的软件中轻松访问。
    Sample size calculations for two (independent) samples are well established and applied in (pre-)clinical research. When planning several samples, which is common in, for example, preclinical studies, sample size planning tools based on analysis of variance methods are available. Since the underlying effect sizes of these methods are often hard to interpret and to provide for the sample size planning, we employ multiple contrast test procedures for sample size computations in both parametric (under normality assumption) and nonparametric designs using Steel-type tests. Since the exact distributions of the test statistics are unknown under the alternative and variance heterogeneity, we use approximate solutions. Furthermore, since no closed formula for the sample size is available, we use numerical approximations for their computation. Extensive simulation studies are finally conducted to assess the quality of the approximations. It turns out that the methods are accurate in the sense that the multiple contrast test procedures reach the target power to detect the alternative of interest with the sample size computed. The developed procedures are a valuable tool to plan (pre-)clinical trials with several samples and are easily accessible in publicly available software.
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  • 文章类型: Clinical Trial, Phase II
    2期剂量发现研究的样本量,通常基于检测显著剂量反应关系的功率要求来确定,通常不会为3期目标剂量选择提供足够的精度。我们建议根据在可接受范围内成功识别目标剂量的概率来计算剂量发现研究的样本量(例如,目标的80%-120%)使用多重比较和建模程序(MCP-Mod)。根据提议的方法,还可以比较2期剂量发现研究的不同设计选项。由于假定的真实剂量反应关系固有的不确定性,建议进行敏感性分析,以评估样本量计算对建模假设偏差的稳健性。计划进行假设的2期剂量发现研究来说明要点。建议方法的代码可在https://github.com/happysundae/posMCPMod上获得。
    Sample sizes of Phase 2 dose-finding studies, usually determined based on a power requirement to detect a significant dose-response relationship, will generally not provide adequate precision for Phase 3 target dose selection. We propose to calculate the sample size of a dose-finding study based on the probability of successfully identifying the target dose within an acceptable range (e.g., 80%-120% of the target) using the multiple comparison and modeling procedure (MCP-Mod). With the proposed approach, different design options for the Phase 2 dose-finding study can also be compared. Due to inherent uncertainty around an assumed true dose-response relationship, sensitivity analyses to assess the robustness of the sample size calculations to deviations from modeling assumptions are recommended. Planning for a hypothetical Phase 2 dose-finding study is used to illustrate the main points. Codes for the proposed approach is available at https://github.com/happysundae/posMCPMod.
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  • 文章类型: Randomized Controlled Trial
    在整群随机试验中,内相关系数是确定样本量的关键输入参数。样本量对团内相关系数的微小差异非常敏感,因此,有一个稳健的场内相关系数估计是至关重要的。这通常是有问题的,因为相关的簇内相关系数估计不可用,或者可用的估计由于基于具有低数量的簇的小规模研究而不精确。错误的规范可能会导致动力不足或效率低下的大型审判,并可能导致不道德的审判。
    我们应用贝叶斯方法来产生脑内相关系数估计,并因此提出了一项计划中的集群随机试验的样本量,该试验是针对中风后尿失禁的系统排尿计划的有效性。贝叶斯分层模型用于结合来自其他相关试验的内相关系数估计,并利用已发表研究中可用的大量内相关系数信息。我们采用知识启发过程来评估每个内部相关系数估计与计划的试验设置的相关性。专家评审团队为每项研究分配了相关性权重,研究中的每个结果,因此告知贝叶斯建模的参数。为了衡量专家的表现,采用了协议和可靠性方法。
    从16项先前发表的试验中提取的34种内相关系数估计在贝叶斯分层模型中使用专家得出的汇总相关性权重进行组合。可从外部来源获得的簇内相关系数用于构建目标簇内相关系数的后验分布,该后验分布被总结为后验中位数,具有95%的可信间隔,可告知研究人员合理的样本量值范围。估计的聚集内相关系数确定了450(25个簇)和480(20个簇)之间的样本量,与经典方法的500-600相比。分位数的使用,和其他参数,从估计的后验分布进行了说明,并描述了对样本量的影响。
    考虑未知的内部相关系数的不确定性,试验可以用更强大的样本量设计。所提出的方法提供了从不同的集群随机试验设置中纳入内部相关系数的可能性,这些系数可能与计划的研究不同。在建模中考虑到了差异。通过使用专家知识来引出相关性权重,并综合外部可用的集中相关系数估计,信息的使用比经典方法更有效,其中,池内相关系数估计往往不太稳健,过于保守。与选择保守的聚集内相关系数估计的常规策略相比,构建的聚集内相关系数估计平均可能产生较小的样本量。因此,这可以导致大量的时间和资源节省。
    The intracluster correlation coefficient is a key input parameter for sample size determination in cluster-randomised trials. Sample size is very sensitive to small differences in the intracluster correlation coefficient, so it is vital to have a robust intracluster correlation coefficient estimate. This is often problematic because either a relevant intracluster correlation coefficient estimate is not available or the available estimate is imprecise due to being based on small-scale studies with low numbers of clusters. Misspecification may lead to an underpowered or inefficiently large and potentially unethical trial.
    We apply a Bayesian approach to produce an intracluster correlation coefficient estimate and hence propose sample size for a planned cluster-randomised trial of the effectiveness of a systematic voiding programme for post-stroke incontinence. A Bayesian hierarchical model is used to combine intracluster correlation coefficient estimates from other relevant trials making use of the wealth of intracluster correlation coefficient information available in published research. We employ knowledge elicitation process to assess the relevance of each intracluster correlation coefficient estimate to the planned trial setting. The team of expert reviewers assigned relevance weights to each study, and each outcome within the study, hence informing parameters of Bayesian modelling. To measure the performance of experts, agreement and reliability methods were applied.
    The 34 intracluster correlation coefficient estimates extracted from 16 previously published trials were combined in the Bayesian hierarchical model using aggregated relevance weights elicited from the experts. The intracluster correlation coefficients available from external sources were used to construct a posterior distribution of the targeted intracluster correlation coefficient which was summarised as a posterior median with a 95% credible interval informing researchers about the range of plausible sample size values. The estimated intracluster correlation coefficient determined a sample size of between 450 (25 clusters) and 480 (20 clusters), compared to 500-600 from a classical approach. The use of quantiles, and other parameters, from the estimated posterior distribution is illustrated and the impact on sample size described.
    Accounting for uncertainty in an unknown intracluster correlation coefficient, trials can be designed with a more robust sample size. The approach presented provides the possibility of incorporating intracluster correlation coefficients from various cluster-randomised trial settings which can differ from the planned study, with the difference being accounted for in the modelling. By using expert knowledge to elicit relevance weights and synthesising the externally available intracluster correlation coefficient estimates, information is used more efficiently than in a classical approach, where the intracluster correlation coefficient estimates tend to be less robust and overly conservative. The intracluster correlation coefficient estimate constructed is likely to produce a smaller sample size on average than the conventional strategy of choosing a conservative intracluster correlation coefficient estimate. This may therefore result in substantial time and resources savings.
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