SSU rDNA

SSU rDNA
  • 文章类型: Journal Article
    GlugeaThélohan属的细胞内寄生虫,1891年(微孢子虫)包括约34种推定物种,能够在淡水和海洋硬骨鱼中引起高发病率和死亡率。在这项研究中,我们报告了第一个与Glugeasp相关的大规模死亡事件。在第勒尼安海南部(意大利)感染自由放养的圆形沙丁鱼。这里,我们描述了这种微孢子虫的成熟孢子的超微结构并对其进行了分子表征,以及报告其系统发育位置。大多数受影响的鱼显示其腹部不规则肿胀。尸检时,可变数量的异种瘤,球形到椭圆形,在腹膜腔中发现,所有鱼类的内脏都强烈附着在腹膜腔中。组织学分析显示,慢性炎症的严重程度各不相同,并且与多发性异种瘤增殖相关的内脏器官偶尔坏死。这些病理发现被认为是造成这种大规模死亡事件的主要原因。形态学上,目前的材料与G.sardinellesis和G.thunni密切相关。与新SSUrDNA序列最接近的系统发育类群是G.thunni和错误鉴定的G.plecoglossi,它们彼此密切相关,这也表明所有这些序列可能属于同一物种。
    Intracellular parasites of the genus Glugea Thélohan, 1891 (Microsporidia) comprise about 34 putative species capable of causing high morbidity and mortality in freshwater and marine teleost fishes. In this study, we report on the first mass mortality event associated with Glugea sp. infecting free-ranging round sardinella Sardinella aurita in the southern Tyrrhenian Sea (Italy). Here, we describe the ultrastructure of mature spores of this microsporidian and characterize it molecularly, as well as report its phylogenetic position. Most of the affected fish showed an irregular swelling of its abdomen. At necropsy, a variable number of xenomas, spherical to ellipsoidal in shape, were found in the peritoneal cavity strongly attached to the viscera of all fish. Histological analysis revealed varying severity of chronic inflammation along with occasional necrosis in visceral organs associated with multiple xenoma proliferation. These pathological findings were considered the main cause of this mass mortality event. Morphologically, the present material was closely related to G. sardinellesis and G. thunni. The phylogenetically closest taxa to the newly SSU rDNA sequence were G. thunni and an erroneusly identified  G. plecoglossi, which were very closely related to each other, also suggesting that all these sequences might belong to the same species.
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  • 文章类型: Journal Article
    越南沿海水域有各种各样的鱼类,但是这些潜在宿主的寄生虫多样性特征要少得多。为了开始解决这个知识差距,我们在2018-2019年对越南东海芽庄湾收集的鱼类中的粘液虫寄生虫进行了调查。在2018年3月至4月,2019年1月至2月和2019年11月至12月收集了Mugilid鱼类,并检查了粘虫。在四种鱼的胆囊中发现了与Ellipsomyxa属一致的粘孢子,我们彻底地描述了Planilizamelinoptera的特征。粘孢子呈椭圆形,没有条纹,有明显的弯曲缝合线。极性胶囊是梨形的,朝向孢子的两极。将形态特征与名义物种进行了比较,来自越南的该物种与众不同。基于部分小亚基rDNA序列的系统发育分析显示,Ellipsomyxa物种分为三个系统发育谱系,尽管在某些分支机构中,按寄宿家庭分组,栖息地或地方,没有明确的系统发育模式。我们在P.melinoptera中遇到的新物种与Ellipsomyxaadlardi有亲密的姐妹关系,这两个物种都属于Ellipsomyxa谱系中一个更大的亚进化枝。尽管有这种系统发育相似性,这些物种在形态上不同,和部分大亚基DNA序列彼此只有93%相似。形态特征和分子数据的结合表明,这是一个未描述的物种,我们提出了名称Ellipsomyxagordeyin.sp。
    The coastal waters of Vietnam are home to a wide diversity of fishes, but the parasite diversity of these potential hosts is much less well characterized. To begin addressing this knowledge gap, we carried out surveys of myxozoan parasites in fishes collected from Nha Trang Bay in Vietnam\'s East Sea in 2018-2019. Mugilid fishes were collected in March-April 2018, January-February 2019, and November-December 2019, and examined for myxozoans. Myxospores consistent with those of the genus Ellipsomyxa were found in the gall bladder of four mullet species, and we thoroughly characterized those from Planiliza melinoptera. Myxospores were elliptoid and devoid of striation, with a distinct sinuous suture line. Polar capsules were pyriform and oriented toward the poles of the spore. Morphological features were compared to nominal species and this species from Vietnam was distinct. Phylogenetic analysis based on partial small subunit rDNA sequence revealed that broadly, Ellipsomyxa species split into three phylogenetic lineages, and although in some branches there are groupings by host family, habitat or locality, there are no clear phylogenetic patterns. The new species we encountered in P. melinoptera had a close sister relationship with Ellipsomyxa adlardi, with both species part of a larger subclade within the Ellipsomyxa lineage. Despite this phylogenetic similarity, these species were morphologically distinct, and partial large subunit DNA sequences were only 93% similar to each other. A combination of the morphological characteristics and molecular data suggest that this is an undescribed species and we propose the name Ellipsomyxa gordeyi n. sp.
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  • 文章类型: Journal Article
    Lamtostylaparavitiphilanov的形态和形态发生。spec.,一种从中国东部收集的新型土壤细毛纤毛虫,根据活体观察和protargol染色的标本进行了研究。新物种的形态特征如下:七至十二个大核结节,皮质颗粒缺失,19-26肾上腺膜,三个或四个前腹侧cirri,两栖动物正中环形行延伸到大约中体,由12-18个圆形组成,两个或三个横纹肌,27-39左和30-41右边缘马戏团,三个几乎双极背侧运动。形态遗传学,它的特征是最初形成六个额-腹侧-横向二尖瓣前胶原作为原发性原基。值得注意的是,两栖类正中环行和额腹侧后环(或cirri)有助于额-腹侧-横向环的发育。而口腔卷云可能不参与这个过程。基于小亚基核糖体DNA序列数据的系统发育分析表明,具有可用分子数据的Lamtostyla物种不会形成单系群。
    The morphology and morphogenesis of Lamtostyla paravitiphila nov. spec., a novel soil hypotrichous ciliate collected from eastern China, were investigated based on live observations and protargol-stained specimens. The new species is morphologically characterized as follows: seven to twelve macronuclear nodules, cortical granules absent, 19-26 adoral membranelles, three or four frontoventral cirri, the amphisiellid median cirral row extends to about mid-body and composed of 12-18 cirri, two or three transverse cirri, 27-39 left and 30-41 right marginal cirri, three almost bipolar dorsal kineties. Morphogenetically, it is characterized by the initial formation of six frontal-ventral-transverse cirral anlagen as primary primordia. Notably, the amphisiellid median cirral row and the posterior frontoventral cirrus (or cirri) contribute to the development of the frontal-ventral-transverse cirral anlagen, while the buccal cirrus may not participate in this process. Phylogenetic analyses based on small subunit ribosomal DNA sequence data indicate that the Lamtostyla species with available molecular data do not form a monophyletic group.
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  • 文章类型: Journal Article
    代谢编码分析是一种有效的技术,可用于监测海洋环境中产生软骨藻酸的假硝基菌物种,揭示高水平的分子多样性。然而,这样的努力可能会导致对伪氮芥物种多样性的过度解释,因为分子多样性不仅包括种间和种内多样性,而且还表现出广泛的基因组内变异(IGV)。在这项研究中,我们分析了从中国沿海收集的30株假硝基苯的18SrDNA的V4区域。结果表明,每株多叶枯病菌都有约100个独特的18SrDNAV4序列品种,其各自由独特的扩增子序列变体(ASV)表示。这项研究证明了多纹枯病菌菌株中IGV的广泛程度,这表明IGV也可能存在于其他假硝化菌物种和其他浮游植物物种中。了解IGV的范围和级别对于准确解释元编码分析的结果至关重要。
    Metabarcoding analysis is an effective technique for monitoring the domoic acid-producing Pseudo-nitzschia species in marine environments, uncovering high-levels of molecular diversity. However, such efforts may result in the overinterpretation of Pseudo-nitzschia species diversity, as molecular diversity not only encompasses interspecies and intraspecies diversities but also exhibits extensive intragenomic variations (IGVs). In this study, we analyzed the V4 region of the 18S rDNA of 30 strains of Pseudo-nitzschia multistriata collected from the coasts of China. The results showed that each P. multistriata strain harbored about a hundred of unique 18S rDNA V4 sequence varieties, of which each represented by a unique amplicon sequence variant (ASV). This study demonstrated the extensive degree of IGVs in P. multistriata strains, suggesting that IGVs may also present in other Pseudo-nitzschia species and other phytoplankton species. Understanding the scope and levels of IGVs is crucial for accurately interpreting the results of metabarcoding analysis.
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  • 文章类型: Journal Article
    结节gill病(NGD)是淡水鲑鱼养殖场中与变形虫滋养体相关的新兴疾病。然而,仍然必须实现病原体的明确鉴定。这项研究旨在确定意大利东北部两个虹鳟鱼(Oncorhynchusmykiss)农场中周期性NGD爆发的变形虫物种。在四集(2023年2月至4月)中,88条鱼被安乐死,用宏观的方法评估他们的ill,显微镜和组织病理学检查。对病变的宏观和微观严重程度以及变形虫侵染程度进行评分和统计学评价。将每只动物的一个g弓放在非营养琼脂(NNA)培养皿上进行变形虫分离,培养和随后用SSUrDNA测序鉴定。组织病理学证实中度至重度病变与NGD和轻度至中度变形虫感染一致。变形虫的存在与病变严重程度显着相关。培养的变形虫菌株的光学显微镜和SSUrDNA分析显示存在先前表征的变形虫Naegleriasp。菌株GERK和几个新菌株:来自Hartmannelidae的两个菌株,来自Ripella属的三个类变形虫和Rosculus的变形虫。尽管NGD病因和变形虫致病作用存在不确定性,识别已知和新的变形虫倾向于可能的多病因起源。
    Nodular gill disease (NGD) is an emerging condition associated with amoeba trophozoites in freshwater salmonid farms. However, unambiguous identification of the pathogens still must be achieved. This study aimed to identify the amoeba species involved in periodic NGD outbreaks in two rainbow trout (Oncorhynchus mykiss) farms in Northeastern Italy. During four episodes (February-April 2023), 88 fish were euthanized, and their gills were evaluated by macroscopic, microscopic and histopathological examination. The macroscopic and microscopic severity of the lesions and the degree of amoebae infestation were scored and statistically evaluated. One gill arch from each animal was put on non-nutrient agar (NNA) Petri dishes for amoeba isolation, cultivation and subsequent identification with SSU rDNA sequencing. Histopathology confirmed moderate to severe lesions consistent with NGD and mild to moderate amoeba infestation. The presence of amoebae was significantly correlated with lesion severity. Light microscopy of cultured amoebae strains and SSU rDNA analysis revealed the presence of a previously characterized amoeba Naegleria sp. strain GERK and several new strains: two strains from Hartmannelidae, three vannelid amoebae from the genus Ripella and cercozoan amoeba Rosculus. Despite the uncertainty in NGD etiopathogenesis and amoebae pathogenic role, identifying known and new amoebae leans towards a possible multi-aetiological origin.
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  • 文章类型: Journal Article
    一种新的粘菌,Didymiumarynosum,根据形态学证据和系统发育分析进行了描述。该物种是在BadainJaran沙漠和腾格里沙漠交汇处的干旱地区在白桦的叶子上发现的,并在潮湿的室内培养中栽培。形态学上,该物种的特点是表面有黄绿色的碳酸钙晶体和孢子覆盖着小疣,其中一些连接成一条短线。D.arynosum的系统发育分析强烈支持将其分类为单独的进化枝。D.arynosum的孢子到孢子琼脂培养需要23天,本研究对其生命周期进行了详细的描述。
    A new myxomycete species, Didymium arenosum, was described based on morphological evidence and phylogenetic analyses. The species was discovered in the arid region at the confluence of the Badain Jaran desert and Tengger desert on the leaves of Betula platyphylla and was cultivated in a moist chamber culture. Morphologically, the species is distinguished by the greenish-yellow calcium carbonate crystals on the surface and the spores covered with small warts, some of which are connected into a short line. A phylogenetic analysis of D. arenosum strongly supports its classification as a separate clade. The spore to spore agar culture of D. arenosum requires 23 days, and this study provides a detailed description of its life cycle.
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  • 文章类型: Journal Article
    一种新的尿道口的形态和形态发生,天津东方冬虫夏草(Extraholostichides)。11月。subspec.11月。进行了分析。新亚种与正常亚种H.(Extraholostichides)eastensiseastensisWang等人不同。,2022年由相对较长的前端行(约60%与体长的30%),无色皮质颗粒(vs.深棕色),两个(vs.一)半颊层cirri,通常在第一个中腹对后面有一个额外的卷云(与缺乏)。根据额叶纤毛的不同,我们将Holostichides分为两个亚属:H.(Extraholostichides)亚代。11月。(类型物种HolostichideseastensisWang等。,2022年;在中间额叶卷云后面有一个短的圆圈排)和H.(Holostichides)Foissner,1987(类型物种HolostichideschardeziFoissner,1987年;缺少这一小排)。新亚种的主要形态发生特征与H.(Extraholostichides)eastensiseastensis非常相似,只是有些细微差异。基于SSUrDNA序列的系统发育分析表明H.(Extraholostichides)后代。11月。是单系的,嵌套在单系的Holostichides属中,是Eschaneustylalugeri的妹妹.
    The morphology and morphogenesis of a new urostylid, Holostichides (Extraholostichides) eastensis tianjinensis subgen. nov. subspec. nov. were analyzed. The new subspecies differs from the nominotypical subspecies H. (Extraholostichides) eastensis eastensis Wang et al., 2022 by the relatively long frontoterminal row (about 60% vs. 30% of body length), colorless cortical granules (vs. dark brown), two (vs. one) parabuccal cirri, and usually an extra cirrus behind the first midventral pair (vs. lacking). Based on the difference in the frontal ciliature, we split Holostichides into two subgenera: H. (Extraholostichides) subgen. nov. (type species Holostichides eastensis Wang et al., 2022; with a short cirral row behind the middle frontal cirrus) and H. (Holostichides) Foissner, 1987 (type species Holostichides chardezi Foissner, 1987; lacking this short row). The main morphogenetic characters of the new subspecies are very similar to those of H. (Extraholostichides) eastensis eastensis except for some minor differences. Phylogenetic analyses based on SSU rDNA sequences indicate that H. (Extraholostichides) subgen. nov. is monophyletic and nested within the monophyletic genus Holostichides, which is sister to Eschaneustyla lugeri.
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  • 文章类型: Journal Article
    我们对爱媛的两个农场的养殖环颈野鸡(Phasianuscolchicuskarpowi)的胃肠道进行了寄生虫学检查,日本。通过浮选和沉降法进行粪便检查(从2020年开始,连续三年分别为43、103和50个样品)检测到球虫卵囊(5-58%),或毛细管(40-56%)和异形卵(45-72%)。人工孢子学之后,大多数有孢子的球虫卵囊是椭圆形的,没有小孔或残留物,但是有1-3个极性折射颗粒,形态上让人联想到艾美球虫(Apicomplex:Eucoccidiorida:Eimeriidae)。使用泛埃米尔引物和来自不同野鸡的多个卵囊样品对线粒体细胞色素c氧化酶亚基I基因(cox-1)进行密集测序表明是单个物种。我们的特点是,第一次,E.phasiani的cox-1序列,已知在全球野生和圈养的环颈野鸡中普遍存在。在解剖显微镜下的蠕虫恢复显示,食道上皮中有两个毛细血管和一个异型线虫:Eucoleusperforans(Nematoda:毛头菌:毛细血管科)(患病率,8-73%),盲肠粘膜中的毛细血管(Capillariidae)(10-87%),和盲肠腔中的异形(线虫:Ascariida:异形科)(69-88%)。E.perforans的小亚基核糖体RNA基因(SSUrDNA)与日本遥远地区养殖的日本绿色野鸡(Phasianuscolchicusversicolor)的先前分离株完全相同。对C.phasianina的SSUrDNA进行了表征,第一次,展示了与Capillariaanatis的姐妹关系,在家鸭的盲肠中发现的寄生虫,鹅,和各种野生anatid鸟类。
    We performed a parasitological examination of the gastrointestinal tract of farmed ring-necked pheasants (Phasianus colchicus karpowi) on two farms in Ehime, Japan. Fecal examination through flotation and sedimentation methods (43, 103, and 50 samples in three consecutive years from 2020, respectively) detected coccidian oocysts (5-58%), or capillarid (40-56%) and heterakid eggs (45-72%). Following artificial sporology, most sporulated coccidian oocysts were ellipsoidal without micropyle nor residuum, but with 1-3 polar refractile granules, morphologically reminiscent of Eimeria phasiani (Apicomplexa: Eucoccidiorida: Eimeriidae). Intensive sequencing of mitochondrial cytochrome c oxidase subunit I gene (cox-1) using pan-eimerian primers and multiple oocyst samples from different pheasants indicated a single species. We characterized, for the first time, the cox-1 sequence of E. phasiani, known to be prevalent in wild and captive ring-necked pheasants worldwide. Worm recovery under a dissection microscope revealed two capillariid and one heterakid nematode species: Eucoleus perforans (Nematoda: Trichocephalida: Capillariidae) in the esophageal epithelium (prevalence, 8-73%), Capillaria phasianina (Capillariidae) in the cecal mucosa (10-87%), and Heterakis gallinarum (Nematoda: Ascaridida: Heterakidae) in the cecal lumen (69-88%). The small subunit ribosomal RNA gene (SSU rDNA) of E. perforans was perfectly identical to that in a previous isolate from farmed Japanese green pheasants (Phasianus colchicus versicolor) at a distant locality in Japan. The SSU rDNA of C. phasianina was characterized, for the first time, demonstrating a sister relationship with Capillaria anatis, parasites found in the ceca of domestic ducks, geese, and various wild anatid birds.
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  • 文章类型: Journal Article
    单身汉是海洋沙质潮间带中常见的纤毛虫,然而,使用现代分类技术描述的物种很少,由于前面的几个描述仍然缺乏主要数据,如口腔纤毛的详细描述。出于这个原因,肯特丝花科的系统学,1881年产生了共生属,需要进行严格的修订。为了填补这个群体的知识空白,这项研究提出了一个新的物种描述,Tracheloraphisapodiscolorn.sp.,以及对三个鲜为人知的单身汉物种的重新描述,Trachelocercabodiani(Dragesco,1963)Dragesco,2002年,单身汉(赖特,1982)Foissner&Dragesco,1996年和Prototrachelocercafasciolata(Sauerbrey,1928年)福斯纳,1996年,从青岛(中国)沿海海洋栖息地收集,使用活的和protargol染色的标本。Tracheloraphisapodiscolorn.sp.可以与其最密切相关的同源物区分开来,T.变色,通过较短的身体长度和较少的躯体运动。T.aporiscolorn.sp.的分子数据。T.bodiani是第一次提供。此外,根据青岛人口,我们为T.ditis和P.fasiolata提供了改进的诊断。进行了系统发育分析并进行了讨论,因为对单身汉属和单身汉属有强烈的支持。总的来说,基于分类法的更多综合研究,需要超微结构和分子数据才能正确阐明单身汉的系统学。
    Trachelocercids are common ciliates in marine sandy intertidal zones, however, only few species have been described using modern taxonomic techniques, with several earlier descriptions still lacking primary data, such as a detailed description of the oral ciliature. For this reason, systematics of the family Trachelocercidae Kent, 1881 resulted in paraphyletic genera and needs a critical revision. As an attempt to fill the gap of knowledge for this group, this study presents one new species description, Tracheloraphis apodiscolor n. sp., along with redescriptions of three lesser-known trachelocercid species, Trachelocerca bodiani (Dragesco, 1963) Dragesco, 2002, Trachelocerca ditis (Wright, 1982) Foissner & Dragesco, 1996 and Prototrachelocerca fasciolata (Sauerbrey, 1928) Foissner, 1996, collected from coastal marine habitats at Qingdao (China), using live and protargol-stained specimens. Tracheloraphis apodiscolor n. sp. can be distinguished from its closest related congener, T. discolor, by a shorter body length and fewer somatic kineties. Molecular data of T. apodiscolor n. sp. and T. bodiani were provided for the first time. Additionally, based on the Qingdao populations, we provide improved diagnoses for T. ditis and P. fasciolata. Phylogenetic analyses were performed and discussed, as there is strong support for paraphyly of the genera Tracheloraphis and Trachelocerca. In general, more integrative studies based on taxonomy, ultrastructure as well as molecular data are needed to properly shed light on the systematics of trachelocercids.
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  • 文章类型: Journal Article
    在对俄罗斯远东地区土壤藻类多样性的研究中,分离出了一株卵生的双鞭毛绿藻(萨哈林地区,伊图鲁普岛),并使用综合方法进行了检查。系统发育分析,基于SSUrDNA基因,在Oogamochlamydinia(Volvocales,叶绿素科)。该菌株与Oogamochlamys属(顶叶和块状杯状叶绿体;两个顶端收缩液泡)的成员相似,但是,然而,根据成熟营养细胞的大小和形状与它们区分开来,鞭毛的长度,在成熟的营养细胞和游动孢子中都只存在一种类蛋白,前核位置,和精子的形状。尽管在最近的系统发育分析中,基于SSUrDNA序列数据及其对异型衣藻的亲和力,已经损害了Oogamochlamys属的概念,我们将来自Iturup岛的菌株描述为Oogamochlamyskurilensissp。11月。
    A strain of oogamous biflagellate green alga was isolated during a study on soil algal diversity in the Russian Far East (Sakhalin Region, Iturup Island) and examined using an integrative approach. Phylogenetic analyses, based on the SSU rDNA gene, resolved the new strain as a part of the RL clade (sensu Watanabe and Nakada) within Oogamochlamydinia (Volvocales, Chlorophyceae). The strain was similar to members of the genus Oogamochlamys (parietal and massive cup-shaped chloroplasts; two apical contractile vacuoles), but was, however, distinguished from them based on the size and shape of the mature vegetative cells, the flagellar length, the presence of only one pyrenoid in both the mature vegetative cells and the zoospores, the anterior nucleus position, and the spermatozoids\' shape. Although a concept of the genus Oogamochlamys has been compromised in recent phylogenetic analysis based on the SSU rDNA sequence data and its likely affinity to anisogamous Chlamydomonas allensworthii, we described the strain from Iturup Island as Oogamochlamys kurilensis sp. nov.
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