SP-A

SP - A
  • 文章类型: Journal Article
    鉴于2019年冠状病毒病(COVID-19)的各种临床表现,科学界一直在寻找具有预后价值的生物标志物.表面活性蛋白A(SP-A)和D(SP-D)是凝集素,其在确保适当的肺泡功能中起关键作用,并且在以急性呼吸窘迫综合征(ARDS)和肺纤维化为特征的几种肺部疾病中报道了其血清水平的改变。考虑到严重急性呼吸系统综合症冠状病毒2(SARS-CoV-2)感染期间也可能发生这种临床表现,我们想知道这些collectin是否可以作为预后标志物。在这方面,在SARS-CoV-2感染患者(n=51)入院时(T0)和7天后(T1),通过酶免疫分析法检测血清SP-A和SP-D水平,并与健康供体(n=11)进行比较。在感染早期,与健康对照组相比,COVID-19患者的SP-D增加,而在T1时观察到显著降低。根据疾病严重程度对SARS-CoV-2患者进行分层,与轻度患者相比,重度患者的血清SP-D水平升高。鉴于这些结果,SP-D,但不是SP-A,似乎是COVID-19肺炎的合格标志物,早期检测血清SP-D水平对预防性临床管理至关重要。
    Given the various clinical manifestations that characterize Coronavirus Disease 2019 (COVID-19), the scientific community is constantly searching for biomarkers with prognostic value. Surfactant proteins A (SP-A) and D (SP-D) are collectins that play a crucial role in ensuring proper alveolar function and an alteration of their serum levels was reported in several pulmonary diseases characterized by Acute Respiratory Distress Syndrome (ARDS) and pulmonary fibrosis. Considering that such clinical manifestations can also occur during Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection, we wondered if these collectins could act as prognostic markers. In this regard, serum levels of SP-A and SP-D were measured by enzyme immunoassay in patients with SARS-CoV-2 infection (n = 51) at admission (T0) and after seven days (T1) and compared with healthy donors (n = 11). SP-D increased in COVID-19 patients compared to healthy controls during the early phases of infection, while a significant reduction was observed at T1. Stratifying SARS-CoV-2 patients according to disease severity, increased serum SP-D levels were observed in severe compared to mild patients. In light of these results, SP-D, but not SP-A, seems to be an eligible marker of COVID-19 pneumonia, and the early detection of SP-D serum levels could be crucial for preventive clinical management.
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  • 文章类型: Journal Article
    在法医案件中,肺炎的详细识别很重要。我们的目标是使用从各种死后间隔(PMI)的尸体中收集的血清,从统计学上确定三种间质性肺病(ILD)标志物在法医诊断中的适用性。我们回顾性分析了验尸后血清KrebsvondenLungen-6(KL-6)和肺表面活性物质相关蛋白A和D(SP-A和SP-D)的水平,使用在我们设施的法医尸检期间从2019年至2023年获得的221个样本。我们评估了ILD标志物对各种肺炎的诊断效力,并检查了ILD严重程度的评估。当比较ILD组细菌性肺炎(BP)与对照组时,ILD组KL-6显著升高。比较重度ILD(SILD)组与轻度ILD(MILD)组,SILD组KL-6和SP-D显著升高。区分SILD的最佳截止值为KL-6为607.0U/mL,SP-A为55.5ng/mL,SP-D为160.0ng/mL,以及KL-6、SP-A、SILD和SP-D分别为84.1/95.2、55.6/85.7和66.7/74.6。这是第一个在法医学中检查死后血清中KL-6的研究。通过用各种PMI分析尸体,我们的结果从统计学上证实,死后血清KL-6特异性检测ILD,死后血清SP-A对肺损伤有很高的敏感性,和死后血清SP-D可能有助于评估ILD的严重程度。
    In forensic cases, detailed identification of pneumonia is important. Our objective was to statistically determine the applicability of three interstitial lung disease (ILD) markers for forensic diagnosis using serum collected from dead bodies with various postmortem intervals (PMIs). We retrospectively analyzed the levels of postmortem serum Krebs von den Lungen-6 (KL-6) and pulmonary surfactant-associated proteins A and D (SP-A and SP-D) using 221 samples obtained during forensic autopsy at our facility from 2019 to 2023. We evaluated the diagnostic efficacy of ILD markers for various pneumonias against the pathological diagnosis, and examined the assessment of the severity of ILD. When comparing the ILD group with bacterial pneumonia (BP) versus the control group, there was a significant increase in KL-6 in the ILD group. When comparing the severe ILD (SILD) group with the mild ILD (MILD) group, there was a significant increase in KL-6 and SP-D in the SILD group. The optimal cutoff values for differentiating SILD were 607.0 U/mL for KL-6, 55.5 ng/mL for SP-A, and 160.0 ng/mL for SP-D, and the sensitivity/specificity (%) of KL-6, SP-A, and SP-D for SILD were 84.1/95.2, 55.6/85.7, and 66.7/74.6, respectively. This is the first study to examine KL-6 in postmortem serum in forensic medicine. By analyzing dead bodies with various PMIs, our results confirmed statistically that postmortem serum KL-6 specifically detects ILD, postmortem serum SP-A has high sensitivity to lung injury, and postmortem serum SP-D is potentially useful in assessing the severity of ILD.
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  • 文章类型: Journal Article
    背景:气管塌陷(TC),狗的常见病,以咳嗽为特征;然而,对能够客观评估犬TC咳嗽严重程度的血清生物标志物知之甚少。此外,缺乏阐明荧光透视特征与咳嗽严重程度关系的研究。因此,本研究旨在评估咳嗽严重程度与临床特征之间的关系,荧光图像,和新的血清生物标志物在犬TC。
    结果:本研究招募了51只基于荧光透视和临床体征诊断为TC的患者所属犬,并根据咳嗽的严重程度分为三组(咳嗽等级:0、1和2)。信号,合并症,回顾性比较各组的透视特征。血清基质金属蛋白酶-9(MMP-9),白细胞介素-6(IL-6),表面活性剂蛋白-A(SP-A),在所有组中测量syndecan-1(SDC-1)水平。年龄无显著差异,品种,性别,或观察各组间的临床病史。伴随的咽部塌陷随着咳嗽的严重程度而显著增加(p=.031)。根据荧光镜的特点,隆突区域的TC等级显着增加,并且与咳嗽等级一致(p=0.03)。2级组血清MMP-9水平明显高于0级组(p=0.014)。1级组血清IL-6水平显著低于0级组(p=0.020)。各组血清SP-A和SDC-1水平无显著差异。
    结论:咳嗽的严重程度随着TC的进展可以通过荧光镜检查在隆突区域的TC分级来预测。MMP-9可以用作代表咳嗽严重程度的客观血清生物标志物以了解发病机理。
    BACKGROUND: Tracheal collapse (TC), a common disease in dogs, is characterized by cough; however, little is known about the serum biomarkers that can objectively evaluate the severity of cough in canine TC. Furthermore, studies elucidating the relationship of fluoroscopic characteristics with the severity of cough are lacking. Therefore, this study aimed to evaluate the relationship between cough severity and clinical characteristics, fluoroscopic images, and new serum biomarkers in canine TC.
    RESULTS: Fifty-one client-owned dogs diagnosed with TC based on fluoroscopic and clinical signs were enrolled in this study and divided into three groups according to the severity of cough (grade of cough: 0, 1, and 2). Signalments, comorbidities, and fluoroscopic characteristics were compared among the groups retrospectively. The serum matrix metalloproteinase-9 (MMP-9), interleukin-6 (IL-6), surfactant protein-A (SP-A), and syndecan-1 (SDC-1) levels were measured in all groups. No significant differences in age, breed, sex, or clinical history were observed among the groups. Concomitant pharyngeal collapse increased significantly with the severity of cough (p = .031). Based on the fluoroscopic characteristics, the TC grade of the carinal region increased significantly and consistently with the grade of cough (p = .03). The serum MMP-9 level was significantly higher in the grade 2 group than that in the grade 0 group (p = .014). The serum IL-6 level was significantly lower in the grade 1 group than that in the grade 0 group (p = .020). The serum SP-A and SDC-1 levels did not differ significantly among the groups.
    CONCLUSIONS: The severity of cough with the progression of TC can be predicted with the fluoroscopic TC grade at the carinal region. MMP-9 may be used as an objective serum biomarker that represents cough severity to understand the pathogenesis.
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  • 文章类型: Journal Article
    表面活性剂蛋白A(SP-A),一种天然免疫分子,在肺部健康中起着重要作用。SP-A通过C型碳水化合物识别域识别并结合微生物表面糖基,然后结合相应的细胞表面受体(如C1qRp,CRT-CD91复合体,CD14,SP-R210,Toll样受体,SIRP-α,CR3等)穿过胶原蛋白样区域,并随后介导生物效应。SP-A通过促进肺泡II型上皮细胞吸收表面活性剂和肺泡巨噬细胞吞噬病原微生物来调节肺先天免疫。SP-A还通过抑制DC成熟来调节肺适应性免疫,和T细胞增殖和分化。本文综述了SP-A与适应性免疫和内在免疫之间的最新关系。
    Surfactant protein A (SP-A), a natural immune molecule, plays an important role in lung health. SP-A recognizes and binds microbial surface glycogroups through the C-type carbohydrate recognition domain, and then binds corresponding cell surface receptors (such as C1qRp, CRT-CD91 complex, CD14, SP-R210, Toll-like receptor, SIRP-α, CR3, etc.) through collagen-like region, and subsequently mediates biological effects. SP-A regulates lung innate immunity by promoting surfactant absorption by alveolar type II epithelial cells and phagocytosis of pathogenic microorganisms by alveolar macrophages. SP-A also regulates lung adaptive immunity by inhibiting DC maturation, and T cell proliferation and differentiation. This article reviews latest relationships between SP-A and adaptive and intrinsic immunity.
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  • 文章类型: Journal Article
    研讨已证明lncRNACASC15在糖尿病伴慢性肾衰患者中的异常表达及感化。然而,其在糖尿病肾病(DN)中的作用尚不清楚。本研究旨在探讨lncRNACASC15在DN中的潜在机制和作用。通过Starbase软件预测miR-424与CASC15/SP-A之间的关系,并通过荧光素酶报告基因测定进行验证。HK-2细胞用25mM葡萄糖(HG)处理24h,建立DN细胞模型。采用MTT和流式细胞仪检测细胞增殖和凋亡。通过RT-qPCR和蛋白质印迹测定分析上皮-间质转化(EMT)标志物。我们证明CASC15可以与miR-424互相感化,SP-A是miR-424的一个靶点。HG处理显著增强HK-2细胞中的lncRNACASC15水平并降低miR-424水平。LncRNACASC15-siRNA显著提高细胞活力,抑制细胞凋亡,促进E-cadherin表达,并抑制N-cadherin在HG处理的HK-2细胞中的表达,这些效应被miR-424抑制剂逆转。SP-A在HG处理的HK-2细胞中高度表达。miR-424模拟物对HG处理的HK-2细胞的生物学效应被SP-A质粒逆转。总之,lncRNACASC15抑制通过miR-424/SP-A轴缓解HG诱导的HK-2细胞损伤和EMT。
    Study has demonstrated the abnormal expression and role of lncRNA CASC15 in diabetes patients with chronic renal failure. However, its role in diabetes nephropathy (DN) is still unclear. This study aimed to investigate the potential mechanism and role of lncRNA CASC15 in DN. The relationship between miR-424 and CASC15/SP-A was predicted by Starbase software and verified by luciferase reporter assay. HK-2 cells were treated with 25 mM glucose (HG) for 24 h to establish DN cell model. MTT and flow cytometry analysis were carried out to test cell proliferation and apoptosis. Epithelial-to-mesenchymal transition (EMT) markers were analyzed by RT-qPCR and western blot assay. We proved that CASC15 could interact with miR-424, and SP-A was a target of miR-424. HG-treatment significantly enhanced lncRNA CASC15 level and decreased miR-424 level in HK-2 cells. LncRNA CASC15-siRNA significantly improved cell viability, repressed apoptosis, promoted E-cadherin expression, and inhibited N-cadherin expression in HG-treated HK-2 cells, and these effects were reversed by miR-424 inhibitor. SP-A was highly expressed in HG-treated HK-2 cells. The biological effects of miR-424 mimic on HG-treated HK-2 cells were reversed by SP-A-plasmid. In conclusion, lncRNA CASC15 inhibition relieved HG-induced HK-2 cell injury and EMT through miR-424/SP-A axis.
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  • 文章类型: Randomized Controlled Trial
    对暴露于典型室内来源的细颗粒(PM2.5)和超细颗粒对人体健康的影响了解不足,包括烹饪和烛光燃烧。我们研究了短期暴露于烹饪和燃烧蜡烛的排放物是否会导致轻度哮喘的年轻个体发生炎症变化。36名非吸烟哮喘患者参加了一项随机对照双盲交叉研究,参加了三个暴露会议(平均PM2.5µg/m3;多环芳烃ng/m3):(a)空气与烹饪产生的排放(96.1;1.1),(b)混合有蜡烛排放物的空气(89.8;10),和(c)清洁的过滤空气(5.8;1.0)。在相邻的房间中产生排放,并进入一个全面的暴露室,参与者在那里暴露五个小时。评估了几种与气道和全身炎症变化相关的生物标志物;感兴趣的主要结果是呼出空气中液滴中的表面活性剂蛋白A(SP-A)和白蛋白-小气道表面活性剂组成变化的新型生物标志物。次要结果包括鼻腔灌洗中的细胞因子,细胞因子,C反应蛋白(CRP),上皮祖细胞(EPCs),遗传毒性,与DNA修复相关的基因表达,氧化应激,和炎症,以及血液中的代谢产物.在暴露开始之前收集样品,就在曝光后和第二天早上。
    吸入蜡烛后,呼出空气中的液滴中的SP-A浓度稳定,而浓度在烹饪和清洁空气暴露后下降。与清洁空气相比,暴露于烹饪和蜡烛后,呼出空气中的液滴中的白蛋白增加,虽然不重要。暴露于烹饪后,氧化损伤的DNA和血液中某些脂质和脂蛋白的浓度显着增加。我们发现烹饪和蜡烛暴露与包括细胞因子在内的全身性炎症生物标志物之间没有或弱关联。CRP,和EPC。
    烹饪和蜡烛排放对一些与健康相关的生物标志物产生影响,而在其他人中没有观察到影响;暴露于烹饪后,血液中氧化损伤的DNA和脂质和脂蛋白的浓度增加,而烹饪和蜡烛排放轻微影响小气道,包括主要结果SP-A和白蛋白。我们发现暴露与全身性炎症生物标志物之间只有弱关联。一起,结果显示烹饪和蜡烛暴露后存在轻度炎症。
    There is insufficient knowledge about the systemic health effects of exposure to fine (PM2.5) and ultrafine particles emitted from typical indoor sources, including cooking and candlelight burning. We examined whether short-term exposure to emissions from cooking and burning candles cause inflammatory changes in young individuals with mild asthma. Thirty-six non-smoking asthmatics participated in a randomized controlled double-blind crossover study attending three exposure sessions (mean PM2.5 µg/m3; polycyclic aromatic hydrocarbons ng/m3): (a) air mixed with emissions from cooking (96.1; 1.1), (b) air mixed with emissions from candles (89.8; 10), and (c) clean filtered air (5.8; 1.0). Emissions were generated in an adjacent chamber and let into a full-scale exposure chamber where participants were exposed for five hours. Several biomarkers were assessed in relation to airway and systemic inflammatory changes; the primary outcomes of interest were surfactant Protein-A (SP-A) and albumin in droplets in exhaled air - novel biomarkers for changes in the surfactant composition of small airways. Secondary outcomes included cytokines in nasal lavage, cytokines, C-reactive protein (CRP), epithelial progenitor cells (EPCs), genotoxicity, gene expression related to DNA-repair, oxidative stress, and inflammation, as well as metabolites in blood. Samples were collected before exposure start, right after exposure and the next morning.
    SP-A in droplets in exhaled air showed stable concentrations following candle exposure, while concentrations decreased following cooking and clean air exposure. Albumin in droplets in exhaled air increased following exposure to cooking and candles compared to clean air exposure, although not significant. Oxidatively damaged DNA and concentrations of some lipids and lipoproteins in the blood increased significantly following exposure to cooking. We found no or weak associations between cooking and candle exposure and systemic inflammation biomarkers including cytokines, CRP, and EPCs.
    Cooking and candle emissions induced effects on some of the examined health-related biomarkers, while no effect was observed in others; Oxidatively damaged DNA and concentrations of lipids and lipoproteins were increased in blood after exposure to cooking, while both cooking and candle emissions slightly affected the small airways including the primary outcomes SP-A and albumin. We found only weak associations between the exposures and systemic inflammatory biomarkers. Together, the results show the existence of mild inflammation following cooking and candle exposure.
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  • 文章类型: Journal Article
    背景:间质性肺异常(ILA)与进展为间质性肺疾病(ILD)的风险相关。KrebsvondenLungen6(KL-6)和表面活性剂蛋白(SP)-A已被用作ILD的生物标志物。在这项研究中,我们评估了这些生物标志物的水平,并确定了它们在健康个体中的临床相关性,以评估它们在ILA诊断中的有用性.
    方法:将患者样本分为三组:健康,疾病,和ILD组。我们使用自动免疫测定HISCLKL-6和SP-A测定试剂盒。分析性能评估涉及精度,线性度比较,建立参考间隔,和截止点的确定。我们还分析了健康组胸部X线摄影和计算机断层扫描(CT)或肺功能检查(PFT)异常与血清水平之间的相关性。
    结果:KL-6和SP-A测定显示出良好的分析性能。ILD组和健康组的KL-6和SP-A截止值分别为304U/mL和43.5ng/mL,分别,低于制造商建议的值。在与放射学结果的临床相关性中,CT扫描中肺部异常的受试者的SP-A值明显高于正常扫描中的SP-A值。PFT模式之间的KL-6和SP-A水平没有显着差异;但是,混合模式中的两种血清水平均显示出比其他模式更高的值.
    结论:结果显示血清SP-A和KL-6水平升高与临床特征呈正相关,这些临床特征是胸部影像学偶然发现和肺功能降低。
    BACKGROUND: Interstitial lung abnormalities (ILAs) are associated with the risk of progression to interstitial lung diseases (ILDs). Krebs von den Lungen 6 (KL-6) and surfactant protein (SP)-A have been used as biomarkers of ILDs. In this study, we evaluated the levels of these biomarkers and identified their clinical correlations in healthy individuals to assess their usefulness in the diagnosis of ILAs.
    METHODS: The patient samples were categorized into three groups: healthy, disease, and ILD groups. We used the automated immunoassay HISCL KL-6 and SP-A assay kits. The analytical performance evaluation involved precision, linearity, comparison, establishment of reference intervals, and determination of the cutoff points. We also analyzed the correlations between presence of abnormalities on chest radiography and computed tomography (CT) or pulmonary function test (PFT) and serum levels in the healthy group.
    RESULTS: KL-6 and SP-A assays showed good analytical performance. The KL-6 and SP-A cutoff values were 304 U/mL and 43.5 ng/mL between the ILD and healthy groups, respectively, which were lower than the values recommended by the manufacturer. In the clinical correlations with radiological findings, SP-A values in subjects with lung abnormalities on CT scans were significantly higher than those in normal scans. There was no significant difference in KL-6 and SP-A levels among PFT patterns; however, both serum levels in the mixed pattern showed higher values than those in the other patterns.
    CONCLUSIONS: The results revealed a positive association between increased serum levels of SP-A and KL-6 and clinical characteristics as incidental findings on chest imaging and reduced lung function.
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  • 文章类型: Journal Article
    目的:肺特异性可溶性凝集素,SP-A和SP-D已在临床上用于诊断间质性肺病,但其在COVID-19中的临床意义仍存在争议。这项研究是为了确定它们与其他凝集素(MBL和FCN1)的关系,疾病严重程度,和COVID-19患者的X光片。
    方法:将2021年5月22日至9月19日在札幌医科大学医院收治的131例COVID-19患者纳入研究。数据包括人口统计,病史,症状,标志,实验室发现,和放射学图像是从患者的医疗记录中收集的。入院时进行胸部计算机断层扫描(CT)扫描。血清表面活性蛋白A和D(SP-A和SP-D)水平,使用酶联免疫吸附测定(ELISA)试剂盒测量甘露糖结合凝集素(MBL)和ficolin1(FCN1)。
    结果:与对照组相比,COVID-19组入院时血清SP-A和FCN1水平显着升高(SP-A:59.60±38.89vs.35.61±11.22ng/ml;p<0.01,FCN1:542.45±506.04vs.250.6±161.1ng/ml;p<0.01)。COVID-19重症组的血清SP-D水平明显高于非重症组(SP-D:141.7±155.7vs.61.41±54.54ng/ml;p<0.01,MBL:1,670±1,240vs.2,170±1,140ng/ml;p<0.05)。SP-D强烈反映了影像学发现的程度,而SP-A表现出显著的相关性,尽管比SP-D稍弱相反,MBL和FNC1与影像学表现无明显相关性。
    结论:在可溶性血清凝集素中,SP-A和SP-D可能比报道的疾病生物标志物(如IL-6、LDH、和CRP由于它们的肺特异性特征。
    OBJECTIVE: The lung-specific soluble lectins, SP-A and SP-D have been clinically used to diagnose interstitial lung disease, but their clinical significance in COVID-19 remains controversial. This study was undertaken to determine their association with other lectins (MBL and FCN1), disease severity, and radiographs in COVID-19 patients.
    METHODS: A total of 131 patients with COVID-19 admitted in the Sapporo Medical University Hospital between May 22 and September 19, 2021, were enrolled in the study. Data including demographics, medical history, symptoms, signs, laboratory findings, and radiological images were collected from the patients\' medical records. Chest computed tomography (CT) scanning was performed at admission. Serum levels of surfactant protein A and D (SP-A and SP-D), mannose-binding lectin (MBL) and ficolin1 (FCN1) were measured using enzyme-linked immunosorbent assay (ELISA) kits.
    RESULTS: Compared to the control group, the COVID-19 group had significantly higher serum SP-A and FCN1 levels on admission (SP-A: 59.60±38.89 vs. 35.61±11.22 ng/ml; p<0.01, FCN1: 542.45±506.04 vs. 250.6±161.1 ng/ml; p<0.01). The severe group in COVID-19 had significantly higher serum SP-D and lower MBL levels than the non-severe group (SP-D: 141.7±155.7 vs. 61.41±54.54 ng/ml; p<0.01, MBL: 1,670±1,240 vs. 2,170±1,140 ng/ml; p<0.05). SP-D strongly reflected the degree of imaging findings, whereas SP-A showed a significant correlation, albeit slightly weaker than SP-D. Conversely, MBL and FNC1 were not significantly correlated with imaging findings.
    CONCLUSIONS: Among soluble serum lectins, SP-A and SP-D may be more sensitive to CT findings than reported disease biomarkers such as IL-6, LDH, and CRP due to their lung-specific characteristics.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    肺表面活性蛋白A(SP-A)是肺中组成型表达的免疫保护性胶原凝集素(collectin)。它与免疫细胞的细胞膜结合,并调理细菌等感染因子,真菌,和病毒通过糖蛋白结合。SARS-CoV-2通过使用其尖峰糖蛋白(S蛋白)连接细胞表面的血管紧张素转换酶2(ACE2)受体而进入气道上皮细胞。我们假设SP-A与SARS-CoV-2S蛋白结合,并且这种结合干扰了ACE2的连接。为了研究这个假设,我们使用了混合的量子和经典的计算机建模技术,利用蛋白质图修剪。该图形修剪技术通过在近中等规模量子(NISQ)装置上利用基于量子近似优化算法(QAOA)的MaxCut(QAOA-MaxCut)程序来确定氨基酸链之间的最佳结合位点。在此,每个相邻的三个原子之间的角度被傅里叶变换成微波频率,并发送到量子芯片,识别化学无关的原子,以消除基于他们的化学拓扑。我们通过通用蛋白质资源(UniProt)数据库证实了剩余的残基包含分子中的所有潜在结合位点。使用琥珀色将QAOA-MaxCut与GROMACS和T-REMD进行了比较,OPLS,和CHARMM力场来确定制备蛋白质结构对接的差异,以及Goemans-Williamson,MaxCut的最佳经典算法。通过ZDOCK程序评估了SP-A和SARS-CoV-2S蛋白的修剪蛋白链残基之间的潜在相互作用的相对结合亲和力。我们的数据表明,SP-A可以以与ACE2-Spike结合相似的亲和力连接S蛋白。有趣的是,然而,结果表明,最紧密结合的SP-A结合位点位于S2链,在SARS-CoV-2S蛋白的融合区域,基于这些发现,我们推测SP-A可能不会直接与ACE2竞争S蛋白上的结合位点,但是通过阻碍必要的构象变化或融合过程来干扰病毒进入细胞。
    The pulmonary surfactant protein A (SP-A) is a constitutively expressed immune-protective collagenous lectin (collectin) in the lung. It binds to the cell membrane of immune cells and opsonizes infectious agents such as bacteria, fungi, and viruses through glycoprotein binding. SARS-CoV-2 enters airway epithelial cells by ligating the Angiotensin Converting Enzyme 2 (ACE2) receptor on the cell surface using its Spike glycoprotein (S protein). We hypothesized that SP-A binds to the SARS-CoV-2 S protein and this binding interferes with ACE2 ligation. To study this hypothesis, we used a hybrid quantum and classical in silico modeling technique that utilized protein graph pruning. This graph pruning technique determines the best binding sites between amino acid chains by utilizing the Quantum Approximate Optimization Algorithm (QAOA)-based MaxCut (QAOA-MaxCut) program on a Near Intermediate Scale Quantum (NISQ) device. In this, the angles between every neighboring three atoms were Fourier-transformed into microwave frequencies and sent to a quantum chip that identified the chemically irrelevant atoms to eliminate based on their chemical topology. We confirmed that the remaining residues contained all the potential binding sites in the molecules by the Universal Protein Resource (UniProt) database. QAOA-MaxCut was compared with GROMACS with T-REMD using AMBER, OPLS, and CHARMM force fields to determine the differences in preparing a protein structure docking, as well as with Goemans-Williamson, the best classical algorithm for MaxCut. The relative binding affinity of potential interactions between the pruned protein chain residues of SP-A and SARS-CoV-2 S proteins was assessed by the ZDOCK program. Our data indicate that SP-A could ligate the S protein with a similar affinity to the ACE2-Spike binding. Interestingly, however, the results suggest that the most tightly-bound SP-A binding site is localized to the S2 chain, in the fusion region of the SARS-CoV-2 S protein, that is responsible for cell entry Based on these findings we speculate that SP-A may not directly compete with ACE2 for the binding site on the S protein, but interferes with viral entry to the cell by hindering necessary conformational changes or the fusion process.
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