SLC31A1

SLC31A1
  • 文章类型: Journal Article
    背景:碱性螺旋-环-螺旋ARNT样2(ARNTL2)是一种控制昼夜节律的转录因子。大量研究已经证明了ARNTL2在人类恶性肿瘤中的致癌功能,尽管其潜在机制仍然知之甚少。我们旨在研究ARNTL2在膀胱癌(BLCA)中的意义。
    方法:免疫组化染色,免疫印迹和来自TCGA的数据库用于分析BLCA中ARNTL2,烯醇化酶1(ENO1)和溶质载体家族31成员1(SLC31A1)的临床相关性。通过细胞增殖试验探讨了ARNTL2的功能,凋亡,集落形成和异种移植肿瘤发生。通过RT-qPCR研究了ARNTL2驱动BLCA发育的分子机制。免疫印迹和荧光素酶测定。通过测量葡萄糖消耗和乳酸产生来检查糖酵解。通过使用指定的测定试剂盒评估ENO1活性。
    结果:ARNTL2的过表达通过抑制细胞凋亡和增强糖酵解促进BLCA细胞的增殖和肿瘤发生。SLC31A1,ENO1的上调和SLC31A1介导的ENO1活性的增强对于BLCA细胞中ARNTL2触发的糖酵解和恶性生长至关重要。BLCA患者ARNTL2与SLC31A1、ENO1呈正相关。ARNTL2、SLC31A1或ENO1高表达预测BLCA患者预后不良。SLC31A1的消耗和糖酵解的抑制完全削弱了BLCA细胞的生长能力。
    结论:总之,ARNTL2通过以SLC31A1非依赖性和依赖性方式激活ENO1介导的糖酵解促进BLCA的进展。抑制SLC31A1和糖酵解可能是治疗ARNTL2过表达的BLCA患者的理想方法。
    BACKGROUND: Basic helix-loop-helix ARNT like 2 (ARNTL2) is a transcription factor that controls the circadian rhythm. Amounts of studies have demonstrated the carcinogenic function of ARNTL2 in human malignant tumors albeit the underlying mechanisms remain poorly understood. We aimed to study the significance of ARNTL2 in bladder cancer (BLCA).
    METHODS: Immunohistochemical staining, immunoblotting and the database from TCGA were used to analyze the clinical relevance of ARNTL2, enolase 1 (ENO1) and solute carrier family 31 member 1 (SLC31A1) in BLCA. The function of ARNTL2 was explored by cell proliferation assay, apoptosis, colony formation and xenografted tumorigenesis. The molecular mechanisms of ARNTL2-driving BLCA development were investigated by RT-qPCR, immunoblotting and luciferase assays. Glycolysis was checked by measuring glucose consumption and lactate production. ENO1 activity was assessed by using indicated assay kit.
    RESULTS: Overexpression of ARNTL2 facilitates the proliferation and tumorigenesis of BLCA cells through suppression of apoptosis and enhancement of glycolysis. Up-regulation of SLC31A1, ENO1, and enhancement of SLC31A1-mediated ENO1 activity were critical for ARNTL2-triggered glycolysis and malignant growth in BLCA cells. ARNTL2 was positively correlated with SLC31A1 and ENO1 in BLCA patients. High expression of ARNTL2, SLC31A1 or ENO1 predicted the poor prognosis of BLCA patients. Depletion of SLC31A1 and inhibition of glycolysis completely blunted the growth ability of BLCA cells.
    CONCLUSIONS: In summary, ARNTL2 facilitates the progression of BLCA via activating ENO1-mediated glycolysis in a SLC31A1-independent and -dependent manner. Inhibiting SLC31A1 and glycolysis may be an aspirational approach for the treatment of BLCA patients with overexpression of ARNTL2.
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  • 文章类型: Journal Article
    背景:使癌细胞中耐药状态和药物敏感状态之间发生动态变化的机制仍未得到充分研究。这项研究调查了靶向自噬蛋白降解在调节卵巢癌干细胞(CSC)命运决定和化疗抗性中的作用。
    方法:使用免疫印迹法比较了多种卵巢癌细胞系中CSC富集侧群(SP)和非SP细胞(NSP)之间的自噬水平,免疫荧光,和透射电子显微镜。通过流式细胞术评估自噬调节对CSC标记和分化的影响,免疫印迹和qRT-PCR。计算机建模和免疫共沉淀鉴定了ID1相互作用蛋白。药理学和遗传学方法以及膜联蛋白-PI测定,ChIP分析,西方印迹,qRT-PCR和ICP-MS用于评估对顺铂敏感性的影响,凋亡,SLC31A1表达式,启动子结合,和细胞内铂积累在ID1耗尽的背景下。分析患者来源的肿瘤球体的自噬和SLC31A1水平。
    结果:与非CSC相比,卵巢CSC表现出增加的基础自噬。通过血清饥饿和化学模式的进一步自噬刺激触发了干性调节剂ID1的蛋白水解,从而驱动化学抗性CSC分化为化学敏感性非CSC。在计算机建模中,TCF12被预测为有效的ID1交互因子,通过免疫共沉淀进行验证。ID1消耗释放TCF12以反式激活顺铂流入转运蛋白SLC31A1,从而增加细胞内顺铂水平和细胞毒性。患者来源的肿瘤球体表现出自噬之间的功能关联,ID1、SLC31A1和铂的敏感度。
    结论:这项研究揭示了一种新的自噬-ID1-TCF12-SLC31A1轴,其中ID1的靶向自噬降解能够快速重塑CSCs以逆转化疗抗性。调节该途径可以对抗卵巢癌的耐药性。
    BACKGROUND: The mechanisms enabling dynamic shifts between drug-resistant and drug-sensitive states in cancer cells are still underexplored. This study investigated the role of targeted autophagic protein degradation in regulating ovarian cancer stem cell (CSC) fate decisions and chemo-resistance.
    METHODS: Autophagy levels were compared between CSC-enriched side population (SP) and non-SP cells (NSP) in multiple ovarian cancer cell lines using immunoblotting, immunofluorescence, and transmission electron microscopy. The impact of autophagy modulation on CSC markers and differentiation was assessed by flow cytometry, immunoblotting and qRT-PCR. In silico modeling and co-immunoprecipitation identified ID1 interacting proteins. Pharmacological and genetic approaches along with Annexin-PI assay, ChIP assay, western blotting, qRT-PCR and ICP-MS were used to evaluate effects on cisplatin sensitivity, apoptosis, SLC31A1 expression, promoter binding, and intracellular platinum accumulation in ID1 depleted backdrop. Patient-derived tumor spheroids were analyzed for autophagy and SLC31A1 levels.
    RESULTS: Ovarian CSCs exhibited increased basal autophagy compared to non-CSCs. Further autophagy stimulation by serum-starvation and chemical modes triggered proteolysis of the stemness regulator ID1, driving the differentiation of chemo-resistant CSCs into chemo-sensitive non-CSCs. In silico modeling predicted TCF12 as a potent ID1 interactor, which was validated by co-immunoprecipitation. ID1 depletion freed TCF12 to transactivate the cisplatin influx transporter SLC31A1, increasing intracellular cisplatin levels and cytotoxicity. Patient-derived tumor spheroids exhibited a functional association between autophagy, ID1, SLC31A1, and platinum sensitivity.
    CONCLUSIONS: This study reveals a novel autophagy-ID1-TCF12-SLC31A1 axis where targeted autophagic degradation of ID1 enables rapid remodeling of CSCs to reverse chemo-resistance. Modulating this pathway could counter drug resistance in ovarian cancer.
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  • 文章类型: Journal Article
    背景:芪菊地黄丸(QDP)是一种治疗眼部疾病的中药方剂。新文献报道铜诱导的细胞死亡,叫做角化,是铜依赖性的,与其他类型的细胞死亡明显不同。
    目的:本研究旨在探讨QDP是否可以通过减轻铜诱导的糖尿病性白内障患者的死亡来保护晶状体上皮细胞。
    方法:对高糖(HG)诱导的人晶状体上皮细胞(HLEC)给予不同浓度的QDP含药血清。使用Elabscience铜测定试剂盒测试铜浓度。使用CCK-8和EdU测定检测增殖。使用RIP-PCR和荧光素酶报告基因测定鉴定分子结合。
    结果:结果表明,HG培养条件触发了铜浓度并抑制了HLEC的增殖。然后,elesclomol-Cu(Es-Cu)给药上调铜浓度并抑制增殖,和铜凋亡抑制剂四硫钼酸盐(TTM)可以特异性地逆转这种结果。QDP处理降低了铜浓度和角化相关基因(SLC31A1,FDX1)。MeRIP-Seq和RIP-PCR证实QDP通过m6A修饰位点降低SLC31A1mRNA的稳定性,和铜实际上协同了分子结合效率。抢救试验证实了QDP和SLC31A1对HLEC的角化特性的作用。
    结论:本研究确定了QDP通过降低m6A/SLC31A1介导的DC细胞凋亡对DC中HG诱导的HLEC的保护作用。这一发现为QDP的机制提供了新的见解,并阐明了传统处方对DC的多方面作用。
    BACKGROUND: Qiju Dihuang Pill (QDP) is a traditional Chinese medicine prescription for the treatment of eye diseases. Novel literature reports that copper-induced cell death, called as cuproptosis, is a copper-dependent and differs distinctly from other types of cell death.
    OBJECTIVE: The present study aims to investigate whether QDP could protect lens epithelial cells via alleviating copper-induced death in diabetic cataract.
    METHODS: The different concentration of QDP medicated serum was administrated on high glucose (HG)-induced human lens epithelial cells (HLECs). The copper concentration was tested using Elabscience Copper Assay kit. The proliferation was detected using CCK-8 and EdU assays. The molecular binding was identified using RIP-PCR and luciferase reporter assay.
    RESULTS: Results indicated that HG culture condition triggered the copper concentration and repressed the proliferation of HLECs. Then, the elesclomol-Cu (Es-Cu) administration up-regulated the copper concentration and inhibited the proliferation, and cuproptosis inhibitor tetrathiomolybdate (TTM) could specifically reverse the consequence. QDP treatment reduced the copper concentration and cuproptosis-related genes (SLC31A1, FDX1). MeRIP-Seq and RIP-PCR confirmed that QDP reduced the stability of SLC31A1 mRNA through m6A modified site, and copper actually synergized the molecular binding efficiency. Rescue assay verified the role of QDP and SLC31A1 on HLECs\' cuproptosis characteristic.
    CONCLUSIONS: This research identified the protective role of QDP on HG-induced HLECs in DC through decreasing m6A/SLC31A1-mediated cuproptosis in DC. This finding provides novel insights into mechanisms for QDP and sheds light on the multifaceted role of traditional prescription on DC.
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  • 文章类型: Journal Article
    简介:膀胱癌是一个重要的公共卫生问题,具有影响疾病发作的多种遗传改变,programming,和治疗反应。在这项研究中,我们探讨了溶质载体家族31成员1(SLC31A1)在膀胱癌中的多方面作用,参与铜稳态的关键基因。方法:我们的研究涉及通过RT-qPCR分析SLC31A1基因的表达,通过靶向亚硫酸氢盐测序启动子甲基化,使用来自局部膀胱癌患者的临床样品,通过下一代测序(NGS)进行突变状态。稍后,癌症基因组图谱(TCGA)数据集用于验证目的。此外,预后意义,基因富集术语,还使用KM绘图仪探索了SLC31A1的治疗药物,大卫,和DrugBank数据库。结果:我们观察到SLC31A1在膀胱癌组织样本的mRNA和蛋白水平均显著上调,提示其可能参与膀胱癌的发展和进展。此外,我们对甲基化状态的调查显示,SLC31A1在膀胱癌组织中显著低甲基化,这可能有助于其过度表达。SLC31A1基因的ROC分析显示有希望的诊断潜力,强调其在区分膀胱癌患者与正常人中的相关性。然而,考虑其他因素,如癌症分期,转移,和复发,以便在临床上进行更准确的评估。有趣的是,SLC31A1的突变分析表明只有良性突变,表明它们在SLC31A1破坏中的未知作用。除了它的诊断价值,SLC31A1高表达与膀胱癌患者总生存期(OS)较差相关,阐明其预后相关性。基因富集分析表明,SLC31A1可以影响代谢和铜相关过程,进一步强调其在膀胱癌中的作用。最后,我们探索了DrugBank数据库,以确定能够降低SLC31A1表达的潜在治疗药物.我们的发现揭示了六种重要的药物,有可能靶向SLC31A1作为治疗策略。结论:我们的全面调查强调SLC31A1是膀胱癌发展的有希望的生物标志物,programming,和治疗。
    Introduction: Bladder cancer represents a significant public health concern with diverse genetic alterations influencing disease onset, progression, and therapy response. In this study, we explore the multifaceted role of Solute Carrier Family 31 Member 1 (SLC31A1) in bladder cancer, a pivotal gene involved in copper homeostasis. Methods: Our research involved analyzing the SLC31A1 gene expression via RT-qPCR, promoter methylation via targeted bisulfite sequencing, and mutational status via Next Generation Sequencing (NGS) using the clinical samples sourced by the local bladder cancer patients. Later on, The Cancer Genome Atlas (TCGA) datasets were utilized for validation purposes. Moreover, prognostic significance, gene enrichment terms, and therapeutic drugs of SLC31A1 were also explored using KM Plotter, DAVID, and DrugBank databases. Results: We observed that SLC31A1 was significantly up-regulated at both the mRNA and protein levels in bladder cancer tissue samples, suggesting its potential involvement in bladder cancer development and progression. Furthermore, our investigation into the methylation status revealed that SLC31A1 was significantly hypomethylated in bladder cancer tissues, which may contribute to its overexpression. The ROC analysis of the SLC31A1 gene indicated promising diagnostic potential, emphasizing its relevance in distinguishing bladder cancer patients from normal individuals. However, it is crucial to consider other factors such as cancer stage, metastasis, and recurrence for a more accurate evaluation in the clinical context. Interestingly, mutational analysis of SLC31A1 demonstrated only benign mutations, indicating their unknown role in the SLC31A1 disruption. In addition to its diagnostic value, high SLC31A1 expression was associated with poorer overall survival (OS) in bladder cancer patients, shedding light on its prognostic relevance. Gene enrichment analysis indicated that SLC31A1 could influence metabolic and copper-related processes, further underscoring its role in bladder cancer. Lastly, we explored the DrugBank database to identify potential therapeutic agents capable of reducing SLC31A1 expression. Our findings unveiled six important drugs with the potential to target SLC31A1 as a treatment strategy. Conclusion: Our comprehensive investigation highlights SLC31A1 as a promising biomarker for bladder cancer development, progression, and therapy.
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  • 文章类型: Journal Article
    急性肾损伤(AKI)是顺铂化疗的常见并发症,极大地限制了其临床效果和应用。本研究探讨了溶质载体家族31成员1(SLC31A1)在顺铂诱导的AKI中的功能及其可能的机制。将小鼠和HK-2细胞暴露于顺铂以建立体内和体外AKI模型。通过CCK-8检测细胞活力。线粒体和氧化损伤通过Mito-TrackerGreen染色确定,MTROS水平,ATP生产,线粒体膜电位,MDA含量和CAT活性。通过肾功能和组织病理学改变评估AKI。通过TUNEL和caspase-3表达检测细胞凋亡。通过RT-qPCR测量分子表达,西方印迹,和免疫组织化学。通过荧光素酶报告基因测定和ChIP研究了分子机制。在AKI模型中,SLC31A1水平主要通过顺铂暴露而增加。值得注意的是,顺铂激发提高了铜离子(Cu+)水平。此外,补铜强化顺铂诱导的细胞死亡,线粒体功能障碍,和氧化应激在HK-2细胞,表明在顺铂诱导的AKI中,而这些变化被SLC31A1敲低部分抵消。E74类ETS转录因子3(ELF3)可直接结合SLC31A1启动子并促进其转录。在顺铂诱导的AKI时,ELF3上调并与SLC31A1表达呈正相关。SLC31A1沉默恢复肾功能,减轻线粒体功能障碍,顺铂诱导的AKI小鼠的凋亡。ELF3转录激活SLC31A1,触发细胞凋亡,通过线粒体功能障碍驱动顺铂诱导的AKI,这表明SLC31A1可能是缓解顺铂化疗期间AKI的有希望的治疗靶点。
    Acute kidney injury (AKI) is a common complication of cisplatin chemotherapy, which greatly limits its clinical effect and application. This study explored the function of solute Carrier Family 31 Member 1 (SLC31A1) in cisplatin-induced AKI and its possible mechanism. Mice and HK-2 cells were exposed to cisplatin to establish the in vivo and in vitro AKI models. Cell viability was detected by CCK-8. Mitochondrial and oxidative damage was determined by Mito-Tracker Green staining, mtROS level, ATP production, mitochondrial membrane potential, MDA content and CAT activity. AKI was evaluated by renal function and histopathological changes. Apoptosis was detected by TUNEL and caspase-3 expression. Molecule expression was measured by RT-qPCR, Western blotting, and immunohistochemistry. Molecular mechanism was studied by luciferase reporter assay and ChIP. SLC31A1 level was predominantly increased by cisplatin exposure in AKI models. Notably, copper ion (Cu+) level was enhanced by cisplatin challenge. Moreover, Cu+ supplementation intensified cisplatin-induced cell death, mitochondrial dysfunction, and oxidative stress in HK-2 cells, indicating the involvement of cuproptosis in cisplatin-induced AKI, whereas these changes were partially counteracted by SLC31A1 knockdown. E74 like ETS transcription factor 3 (ELF3) could directly bind to SLC31A1 promoter and promote its transcription. ELF3 was up-regulated and positively correlated with SLC31A1 expression upon cisplatin-induced AKI. SLC31A1 silencing restored renal function, alleviated mitochondrial dysfunction, and apoptosis in cisplatin-induced AKI mice. ELF3 transcriptionally activated SLC31A1 to trigger cuproptosis that drove cisplatin-induced AKI through mitochondrial dysfunction, indicating that SLC31A1 might be a promising therapeutic target to mitigate AKI during cisplatin chemotherapy.
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  • 文章类型: Journal Article
    溶质载体家族31成员1(SLC31A1)编码作为摄取膳食铜的同三聚体起作用的蛋白质。作为角化基因家族的重要成员,它在正常组织和肿瘤中起着至关重要的作用。在这项研究中,我们分析了不同人类癌症类型的SLC31A1,以更好地了解SLC31A1在癌症发展中的作用.我们使用在线数据库搜索信息进行分析,系统全面地,SLC31A1在肿瘤中的作用。在九种癌症类型中,SLC31A1在肿瘤组织和正常组织中的表达有显著差异。根据进一步分析,胰腺癌的SLC31A1基因突变率最高,7种肿瘤的基因甲基化水平显著降低。SLC31A1的表达也与免疫细胞对肿瘤的浸润有关,免疫检查点基因的表达,和免疫疗法标志物(TMB和MSI),这表明SLC31A1可能与免疫治疗特别相关。对不同类型癌症的SLC31A1的全面分析使我们能够清晰而全面地了解其在系统水平上引起癌症的作用。
    Solute carrier family 31 member 1 (SLC31A1) encodes a protein that functions as a homotrimer for the uptake of dietary copper. As a vital member of the cuproptosis gene family, it plays an essential role in both normal tissues and tumors. In this study, we analyzed SLC31A1 across human cancer types to gain a better understanding of SLC31A1\'s role in cancer development. We searched for information using online databases to analyze, systematically and comprehensively, the role of SLC31A1 in tumors. Amongst nine cancer types, the expression of SLC31A1 was significantly different between tumors and normal tissues. According to further analysis, pancreatic cancer had the highest mutation rate of the SLC31A1 gene, and the methylation levels of the gene were significantly reduced in seven tumors. The expression of SLC31A1 is also linked to the infiltration of tumors by immune cells, the expression of immune checkpoint genes, and immunotherapy markers (TMB and MSI), suggesting that SLC31A1 may be of particular relevance in immunotherapy. This thorough analysis of SLC31A1 across different types of cancer gives us a clear and comprehensive insight into its role in causing cancer on a systemic level.
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    文章类型: Journal Article
    目的:癌症仍然是一个全球性的健康挑战,需要鉴定新的生物标志物和治疗靶标。角化,一种最近公认的与铜代谢有关的细胞死亡形式,为抗癌策略提供了一条有希望的途径。我们调查了SLC31A1的临床意义,SLC31A1是角化的关键调节因子,在多种癌症类型中,旨在阐明其作为诊断生物标志物的潜力,预后,指标和治疗目标。
    方法:我们通过TIMER2.0进行了泛癌症分析,评估了SLC31A1在多种癌症类型中的表达。使用KM绘图仪进行生存分析。使用UALCAN和人蛋白图谱(HPA)数据库进行表达验证。在ULACAN和OncoDB的帮助下进行甲基化分析。使用cBioPortal数据库进行突变分析。通过TIMER2.0进行免疫浸润分析和通过Metascape进行基因富集分析,以深入了解SLC31A1在癌症中的潜在作用机制。最后,逆转录-定量聚合酶链反应(RT-qPCR)用于确认临床样品中的SLC31A1表达。
    结果:在分析的癌症中,SLC31A1在整个乳腺癌(BRCA)中表现出显着的上调和与较差的总生存期(OS)的相关性,宫颈鳞状细胞癌(CESC),头颈部鳞状细胞癌(HNSC),和食管癌(ESCA)。突变和启动子甲基化分析进一步表明,低甲基化是BRCA中SLC31A1过表达的主要原因,CESC,HNSC,和ESCA。免疫浸润分析显示SLC31A1表达与CD8+T细胞的存在之间存在显著关联,CD4+T细胞,和肿瘤微环境中的巨噬细胞。基因富集分析为BRCA的潜在分子途径提供了有价值的见解,CESC,HNSC,和ESCA。此外,当使用临床样本通过RT-qPCR分析SLC31A1时,这个基因显示出有希望的诊断潜力,由高曲线下面积(AUC)值反映。
    结论:我们的泛癌症研究强调了SLC31A1的上调及其与BRCA不良OS的相关性,CESC,HNSC,和ESCA。总之,这项研究的结果表明,SLC31A1可能是BRCA的潜在生物标志物和新的治疗靶点,CESC,HNSC,和ESCA。
    OBJECTIVE: Cancer remains a global health challenge, necessitating the identification of novel biomarkers and therapeutic targets. Cuproptosis, a recently recognized form of cell death linked to copper metabolism, presents a promising avenue for anticancer strategies. We investigated the clinical significance of SLC31A1, a key regulator of cuproptosis, in multiple cancer types, aiming to elucidate its potential as a diagnostic biomarker, prognostic, indicator and therapeutic target.
    METHODS: We conducted a pan-cancer analysis through TIMER2.0, evaluating SLC31A1 expression across multiple cancer types. Survival analysis was performed using KM plotter. Expression validation was carried out using UALCAN and Human Protein Atlas (HPA) databases. Methylation analysis was conducted with the help of ULACAN and OncoDB. Mutational analysis was performed using cBioPortal database. Immune infiltration analysis via the TIMER2.0 and gene enrichment analysis via the Metascape were performed to gain insights into the potential mechanisms underlying SLC31A1\'s role in cancer. Finally, Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was employed to confirm SLC31A1 expression in clinical samples.
    RESULTS: Out of analyzed cancer, SLC31A1 exhibited significant up-regulation and correlation with worse overall survival (OS) across Breast Cancer (BRCA), Cervical Squamous Cell Carcinoma (CESC), Head and Neck Squamous Cell Carcinoma (HNSC), and Esophageal Carcinoma (ESCA). Mutational and promoter methylation analyses further revealed that hypomethylation is the major cause of SLC31A1 overexpression among BRCA, CESC, HNSC, and ESCA. Immune infiltration analysis showed significant associations between SLC31A1 expression and the presence of CD8+ T cells, CD4+ T cells, and macrophages in the tumor microenvironment. Gene enrichment analysis provided valuable insights into potential molecular pathways in context to BRCA, CESC, HNSC, and ESCA. Furthermore, when SLC31A1 was analyzed using clinical samples through RT-qPCR, this gene showed promising diagnostic potential, reflected by high Area Under the Curve (AUC) values.
    CONCLUSIONS: Our pan-cancer study highlights the up-regulation of SLC31A1 and its correlation with worse OS in BRCA, CESC, HNSC, and ESCA. In sum, outcomes of this study showed that SLC31A1 could be a potential biomarker and novel therapeutic target of BRCA, CESC, HNSC, and ESCA.
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  • 文章类型: Journal Article
    角化是一种新发现的细胞死亡形式。它受一系列基因调控。这些基因被鉴定为影响肿瘤进展,但是在神经胶质瘤中,与角化相关的基因研究很少。癌症基因组图谱(TCGA)和基因型-组织表达(GTEx)用于筛选神经胶质瘤和健康组织样品中的SLC31A1基因表达。使用基因表达综合(GEO)和定量实时聚合酶链反应(qPCR)验证结果。人类蛋白质图谱(HPA)和美国国家癌症研究所的临床蛋白质组学肿瘤分析协会(CPTAC)用于在蛋白质水平上验证我们的结果。多变量分析和Kaplan-Meier存活曲线用于检查SLC31A1基因表达之间的关系。临床参数,和存活率。使用用于检索相互作用基因/蛋白质(STRING)的在线搜索工具来寻找与SLC31A1相关的基因和蛋白质。使用肿瘤免疫评估资源(TIMER)数据库进行免疫浸润分析。小干扰RNA用于敲低SLC31A1表达,和细胞增殖,凋亡,和迁移使用细胞计数试剂盒-8,流式细胞术,还有Transwell.胶质瘤患者有较高的SLC31A1表达水平,随着世界卫生组织(WHO)等级的升级而增加。生存分析表明,SLC31A1基因表达与总生存(OS)呈负相关,无进展生存期(PFS),和疾病特异性生存(DSS)。免疫浸润分析显示SLC31A1基因与T辅助细胞2(Th2)呈正相关,巨噬细胞,和M2型巨噬细胞,并与浆细胞样树突状细胞(pDC)呈负相关,自然杀伤(NK)CD56bright细胞,和CD8T细胞。体外KD实验表明,SLC31A1敲低抑制了胶质瘤细胞的增殖和迁移,促进了凋亡率。SLC31A1基因的表达可以缩短胶质瘤患者的生存时间。体外研究表明,SLC31A1能促进细胞增殖,和移民,抑制胶质瘤细胞凋亡。它还可以促进肿瘤抑制微环境的形成。
    Cuproptosis is a newly discovered form of cell death. It is regulated by a string of genes. The genes are identified to influence the tumor progression, but in glioma, the cuproptosis-related genes are little studied. The Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) were used to screen for SLC31A1 gene expression in glioma and healthy tissue samples. The results were validated using the Gene Expression Omnibus (GEO) and quantitative real-time polymerase chain reaction (qPCR). The Human Protein Atlas (HPA) and the National Cancer Institute\'s Clinical Proteomic Tumor Analysis Consortium (CPTAC) were used to validate our results at the protein level. Multivariable analysis and Kaplan-Meier survival curves were used to examine the relationship among SLC31A1 gene expression, clinical parameters, and survival rates. The online Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) was used to find the genes and proteins that correlate to SLC31A1. The immune infiltration analysis was performed using the Tumor Immune Estimation Resource (TIMER) databases. Small interfering RNA was used to knock down the SLC31A1 expression, and the cell proliferation, apoptosis, and migration were analyzed using cell counting kit-8, flow cytometry, and transwell. The glioma patients have higher SLC31A1 expression levels, which increase as the World Health Organization (WHO) grade escalates. The survival analysis illustrates that the SLC31A1 gene expression negatively correlates with overall survival (OS), progression-free survival (PFS), and disease-specific survival (DSS). The immune infiltration analysis shows the SLC31A1 gene positively correlates with T helper 2 (Th2) cells, macrophages, and M2-type macrophages and negatively correlates with plasmacytoid dendritic cells (pDCs), natural killer (NK) CD56bright cells, and CD8 T cells. The in vitro KD experiment shows the SLC31A1 knockdown depressed the glioma cell proliferation and migration and promoted the apoptosis rate. The SLC31A1 gene expression can shorten the survival time of glioma patients. In vitro study shows that SLC31A1 can promote cell proliferation, and migration, and depress the cell apoptosis of glioma cells. It also can promote the formation of a tumor-suppressive microenvironment.
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  • 文章类型: Journal Article
    据报道,溶质载体家族31成员1(SLC31A1)是铜进口商,并被确定参与了“角化”的过程。然而,SLC31A1在乳腺癌中的作用机制尚不清楚.
    我们使用Real-timePCR检测了SLC31A1mRNA在乳腺癌组织和细胞系中的表达。本研究的数据来自癌症基因组图谱(TCGA)数据库,并通过R3.6.3进行分析。TIMER,UALCAN,GEPIA2,STRING,Metascape,Kaplan-Meier绘图仪,starBase和miRNet网站用于SLC31A1的综合分析。
    我们的研究表明,SLC31A1mRNA在乳腺肿瘤组织和乳腺癌细胞系中过度表达,与无复发生存率(RFS)和无远处转移生存率(DMFS)密切相关。此外,我们构建了SLC31A1的共表达网络。功能富集分析表明,它们主要参与铜离子的迁移。有趣的是,SLC31A1表达与所有m6A相关基因呈正相关,特别是YTHDF3(r=0.479)。重要的是,LINC00511/miR-29c-3p/SLC31A1轴被鉴定为通过影响铜转运促进乳腺癌进展的最有潜力的途径.此外,SLC31A1在乳腺癌中的表达水平与肿瘤免疫细胞浸润呈正相关,免疫细胞生物标志物和癌症相关成纤维细胞(CAF)。
    LINC00511-miR-29-3p轴介导的SLC31A1表达上调和铜离子转运调控与乳腺癌预后不良相关,与肿瘤免疫浸润呈正相关。
    UNASSIGNED: Solute carrier family 31 member 1(SLC31A1) has been reported as the copper importer, and was identified to be involved in the process of \"cuproptosis\". However, the mechanism of SLC31A1 in breast cancer remains unclear.
    UNASSIGNED: We examined the expression of SLC31A1 mRNA in breast cancer tissues and cell lines using Real-time PCR. The data for this study were obtained from The Cancer Genome Atlas (TCGA) database and analyzed via R 3.6.3. TIMER, UALCAN, GEPIA2, STRING, Metascape, Kaplan-Meier Plotter, starBase and miRNet websites were used for a comprehensive analysis of SLC31A1.
    UNASSIGNED: Our study suggested that SLC31A1 mRNA was over-expressed in breast tumor tissue and breast cancer cell lines, and which was closely related to poor relapse-free survival (RFS) and distant metastasis-free survival (DMFS). In addition, we constructed a co-expression network of SLC31A1. Functional enrichment analysis indicated that they were mainly involved in copper ion transport. Interestingly, SLC31A1 expression was positively associated with all m6A-related genes, especially with YTHDF3 (r = 0.479). Importantly, the LINC00511/miR-29c-3p/SLC31A1 axis was identified as the most potential pathway promoting breast cancer progress by affecting copper transport. Furthermore, the expression level of SLC31A1 in breast cancer was positively correlated with tumor immune cell infiltration, immune cell biomarkers and cancer-associated fibroblast (CAF).
    UNASSIGNED: Up-regulation of SLC31A1 expression and regulation of copper ion transport mediated by LINC00511-miR-29-3p axis is related to poor prognosis and positively correlated with tumor immune infiltration in breast cancer.
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  • 文章类型: Journal Article
    背景:溶质载体家族31成员1(SLC31A1)最近已被鉴定为角化调节基因。最近的研究表明,SLC31A1可能在结直肠癌和肺癌的发生中起作用。然而,SLC31A1的作用及其在多种肿瘤类型中的凋亡调节功能还有待进一步阐明.
    方法:在线网站和数据集,如HPA、TIME2,GEPIA,OncoVar,和cProSite用于提取多种癌症中SLC31A1的数据。利用DAVID和BioGRID进行功能分析,构建蛋白质-蛋白质相互作用(PPI)网络,分别。从cProSite数据库获得SLC31A1的蛋白质表达数据。
    结果:癌症基因组图谱(TCGA)数据集显示,与大多数肿瘤类型的非肿瘤组织相比,SLC31A1在肿瘤组织中的表达增加。在肿瘤类型包括肾上腺皮质癌的患者中,低度胶质瘤,或间皮瘤,较高的SLC31A1表达与较短的总生存期和无病生存期相关.S105Y是TCGA泛癌症数据集中SLC31A1中最普遍的点突变。此外,SLC31A1的表达与肿瘤组织中巨噬细胞和中性粒细胞等免疫细胞的浸润呈正相关。功能富集分析表明,SLC31A1共表达基因参与蛋白结合,膜的组成部分,代谢途径,蛋白质加工,和内质网。用于超氧化物歧化酶的铜伴侣,磷脂酰肌醇-4,5-二磷酸3-激酶催化亚基α和溶质载体家族31成员2是PPI网络中显示的铜稳态调节基因,其表达与SLC31A1呈正相关。分析表明SLC31A1蛋白与mRNA在多种肿瘤中存在相关性。
    结论:这些发现表明SLC31A1与多种肿瘤类型和疾病预后相关。SLC31A1可能是癌症中潜在的关键生物标志物和治疗靶标。
    Solute Carrier Family 31 Member 1 (SLC31A1) has recently been identified as a cuproptosis-regulatory gene. Recent studies have indicated that SLC31A1 may play a role in colorectal and lung cancer tumorigenesis. However, the role of SLC31A1 and its cuproptosis-regulatory functions in multiple tumor types remains to be further elucidated.
    Online websites and datasets such as HPA, TIMER2, GEPIA, OncoVar, and cProSite were used to extract data on SLC31A1 in multiple cancers. DAVID and BioGRID were used to conduct functional analysis and construct the protein-protein interaction (PPI) network, respectively. The protein expression data of SLC31A1 was obtained from the cProSite database.
    The Cancer Genome Atlas (TCGA) datasets showed increased SLC31A1 expression in tumor tissues compared with non-tumor tissues in most tumor types. In patients with tumor types including adrenocortical carcinoma, low-grade glioma, or mesothelioma, higher SLC31A1 expression was associated with shorter overall survival and disease-free survival. S105Y was the most prevalent point mutation in SLC31A1 in TCGA pan-cancer datasets. Moreover, SLC31A1 expression was positively correlated with the infiltration of immune cells such as macrophages and neutrophils in tumor tissues in several tumor types. Functional enrichment analysis showed that SLC31A1 co-expressed genes were involved in protein binding, integral components of the membrane, metabolic pathways, protein processing, and endoplasmic reticulum. Copper Chaperone For Superoxide Dismutase, Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Catalytic Subunit Alpha and Solute Carrier Family 31 Member 2 were copper homeostasis-regulated genes shown in the PPI network, and their expression was positively correlated with SLC31A1. Analysis showed there was a correlation between SLC31A1 protein and mRNA in various tumors.
    These findings demonstrated that SLC31A1 is associated with multiple tumor types and disease prognosis. SLC31A1 may be a potential key biomarker and therapeutic target in cancers.
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