SAFIRE

SAFIRE
  • 文章类型: Journal Article
    背景:经颅多普勒(TCD)是一种评估脑动脉血流速度的技术。TCD经常用于监测动脉瘤性蛛网膜下腔出血(aSAH)患者。这项研究比较了TCD标准的血管痉挛及其与延迟性脑缺血(DCI)的关系。制定并评估了基于各种颅内动脉流速的总体评分。
    方法:在1998年至2017年之间进行了一项回顾性诊断准确性研究,包括621例患者。在发作后2-5天和6-9天之间测量脑动脉的平均流速(MFV)。来自文献的截止值,新的截止值,新的综合评分(综合严重程度评分)用于预测DCI。灵敏度,特异性,并测定曲线下面积(AUC),并进行logistic回归分析。
    结果:在第2-5天,综合严重程度评分显示AUC为0.64(95CI0.56-.71),敏感性为0.53,特异性为0.74。对于DCI,综合严重度评分的调整赔率比为3.41(95CI1.86-6.32)。MCA测量在第2-5天产生检测DCI的最高AUC:AUC0.65(95CI0.58-0.73)。MCA的83cm/s的最佳截止MFV在第2-5天导致灵敏度0.73和特异性0.50。
    结论:对aSAH患者进行TCD监测可能是DCI风险分层的一种有价值的策略。在发病后的早期阶段(第2-5天)可以使用比现在通常使用的更低的临界值。合并所有主要脑动脉的综合严重程度评分可能为解释TCD测量值提供有意义的贡献。
    BACKGROUND: Transcranial Doppler (TCD) is a technique to assess blood flow velocity in the cerebral arteries. TCD is frequently used to monitor aneurysmal subarachnoid hemorrhage (aSAH) patients. This study compares TCD-criteria for vasospasm and its association with Delayed Cerebral Ischemia (DCI). An overall score based on flow velocities of various intracranial arteries was developed and evaluated.
    METHODS: A retrospective diagnostic accuracy study was conducted between 1998 and 2017 with 621 patients included. Mean flow velocity (MFV) of the cerebral artery was measured between 2-5 days and between 6-9 days after ictus. Cutoff values from the literature, new cutoff values, and a new composite score (Combined Severity Score) were used to predict DCI. Sensitivity, specificity, and area under the curve (AUC) were determined, and logistic regression analysis was performed.
    RESULTS: The Combined Severity Score showed an AUC 0.64 (95%CI 0.56-.71) at days 2-5, with sensitivity 0.53 and specificity 0.74. The Combined Severity Score had an adjusted Odds Ratio of 3.41 (95CI 1.86-6.32) for DCI. MCA-measurements yielded the highest AUC to detect DCI at day 2-5: AUC 0.65 (95%CI 0.58-0.73). Optimal cutoff MFV of 83 cm/s for MCA resulted in sensitivity 0.73 and specificity 0.50 at days 2-5.
    CONCLUSIONS: TCD-monitoring of aSAH patients may be a valuable strategy for DCI risk stratification. Lower cutoff values can be used in the early phase after the ictus (day 2-5) than are commonly used now. The Combined Severity Score incorporating all major cerebral arteries may provide a meaningful contribution to interpreting TCD measurements.
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  • 文章类型: Journal Article
    需要对抗微生物感染的新方法。破坏发病机理的一种策略涉及开发干扰细菌毒力的化合物。革兰氏阴性细菌毒力的关键分子决定因素是抗性结瘤分裂家族的外排泵,其中包括AcrAB-TolC。我们之前鉴定了结合AcrB的小分子,抑制AcrAB-TolC,并且似乎不会损坏膜。这些外排泵调节剂(EPM)是在称为SAFIRE(使用细胞内肠杆菌科的荧光显微镜筛选抗感染药)的细胞内筛选平台中发现的。SAFIRE鉴定了破坏革兰氏阴性人类病原体生长的化合物,肠道沙门氏菌血清型鼠伤寒(S.鼠伤寒),在巨噬细胞中。我们使用药物化学来迭代设计〜200EPM35类似物,并测试它们在SAFIRE中的活性,产生具有纳摩尔效力的化合物。通过低温电子显微镜证明类似物在底物结合袋中结合AcrB。尽管有两亲结构,EPM类似物不会破坏膜电压,通过FtsZ定位到细胞隔膜监测。EPM类似物对标准MuellerHinton肉汤中的细菌生长几乎没有影响。然而,在模拟巨噬细胞吞噬体的微环境的肉汤条件下,acrAB是增长所必需的,EPM类似物是抑菌的,和EPM类似物增加抗生素的效力。这些数据表明,在巨噬细胞样条件下,EPM类似物防止通过AcrAB-TolC的有毒细菌代谢物的输出。因此,结合AcrB的化合物可以通过特异性干扰细菌毒性代谢物的输出来破坏感染,宿主防御因素,和/或抗生素。重要细菌外排泵对于抗生素耐药性和毒力至关重要。我们以前确定了抑制外排泵的小分子(外排泵调节剂,EPM)并防止病原体在宿主细胞中复制。这里,我们使用药物化学将EPM对细胞中病原体的活性增加至纳摩尔范围。我们通过低温电子显微镜显示,这些EPM结合了外排泵亚基。在肉汤培养中,EPM增加了效力(活性),但不是功效(最大效果),抗生素。我们还发现,细菌暴露于EPM似乎可以积累有毒的代谢物,否则这些代谢物将通过外排泵输出。因此,细菌外排泵的抑制剂不仅可以通过增强抗生素来干扰感染,而且还允许有毒废物在细菌中积累,提供解释为什么在没有抗生素的情况下需要外排泵进行毒力。
    OBJECTIVE: Bacterial efflux pumps are critical for resistance to antibiotics and for virulence. We previously identified small molecules that inhibit efflux pumps (efflux pump modulators, EPMs) and prevent pathogen replication in host cells. Here, we used medicinal chemistry to increase the activity of the EPMs against pathogens in cells into the nanomolar range. We show by cryo-electron microscopy that these EPMs bind an efflux pump subunit. In broth culture, the EPMs increase the potency (activity), but not the efficacy (maximum effect), of antibiotics. We also found that bacterial exposure to the EPMs appear to enable the accumulation of a toxic metabolite that would otherwise be exported by efflux pumps. Thus, inhibitors of bacterial efflux pumps could interfere with infection not only by potentiating antibiotics, but also by allowing toxic waste products to accumulate within bacteria, providing an explanation for why efflux pumps are needed for virulence in the absence of antibiotics.
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  • 文章类型: Preprint
    需要对抗微生物感染的新方法。破坏发病机理的一种策略涉及开发干扰细菌毒力的化合物。革兰氏阴性细菌毒力的关键分子决定因素是抗性结瘤分裂(RND)家族的外排泵,其中包括AcrAB-TolC。我们之前鉴定了结合AcrB的小分子,抑制AcrAB-TolC,并且似乎不会损坏膜。这些外排泵调节剂(EPM)是在称为SAFIRE(使用细胞内肠杆菌科的荧光显微镜筛选抗感染药)的细胞内筛选平台中发现的。SAFIRE鉴定了破坏革兰氏阴性人类病原体生长的化合物,巨噬细胞中的肠道沙门氏菌血清型鼠伤寒沙门氏菌(鼠伤寒沙门氏菌)。我们使用药物化学来迭代设计200EPM35类似物,并测试它们在SAFIRE中的活性,产生具有纳摩尔效力的化合物。通过低温电子显微镜(cryo-EM)证明类似物在底物结合袋中结合AcrB。尽管有两亲结构,EPM类似物不会破坏膜电压,通过FtsZ定位到细胞隔膜监测。EPM类似物对标准MuellerHinton肉汤中的细菌生长几乎没有影响。然而,在模拟巨噬细胞吞噬体的微环境的肉汤条件下,acrAB是增长所必需的,EPM类似物是抑菌的,并增加抗生素的效力。这些数据表明,在巨噬细胞样条件下,EPM类似物阻止毒性细菌代谢物通过AcrAB-TolC的输出。因此,结合AcrB的化合物可以通过特异性干扰细菌毒性代谢物的输出来破坏感染,宿主防御因素,和/或抗生素。
    目的:细菌外排泵对抗生素耐药性和毒力至关重要。我们以前确定了抑制外排泵的小分子(外排泵调节剂,EPM)并防止病原体在宿主细胞中复制。在这里,我们使用药物化学将EPM对细胞中病原体的活性增加到纳摩尔范围。我们通过低温电子显微镜显示,这些EPM结合了外排泵亚基。在肉汤培养中,EPM增加了效力(活性),但不是功效(最大效果),抗生素。我们还发现,细菌暴露于EPM似乎可以积累有毒的代谢物,否则这些代谢物将通过外排泵输出。因此,细菌外排泵的抑制剂不仅可以通过增强抗生素来干扰感染,而且还允许有毒废物在细菌中积累,提供解释为什么在没有抗生素的情况下需要外排泵进行毒力。
    New approaches for combatting microbial infections are needed. One strategy for disrupting pathogenesis involves developing compounds that interfere with bacterial virulence. A critical molecular determinant of virulence for Gram-negative bacteria are efflux pumps of the resistance-nodulation-division (RND) family, which includes AcrAB-TolC. We previously identified small molecules that bind AcrB, inhibit AcrAB-TolC, and do not appear to damage membranes. These efflux pump modulators (EPMs) were discovered in an in-cell screening platform called SAFIRE (Screen for Anti-infectives using Fluorescence microscopy of IntracellulaR Enterobacteriaceae). SAFIRE identifies compounds that disrupt the growth of a Gram-negative human pathogen, Salmonella enterica serotype Typhimurium (S. Typhimurium) in macrophages. We used medicinal chemistry to iteratively design ~200 EPM35 analogs and test them for activity in SAFIRE, generating compounds with nanomolar potency. Analogs were demonstrated to bind AcrB in a substrate binding pocket by cryo-electron microscopy (cryo-EM). Despite having amphipathic structures, the EPM analogs do not disrupt membrane voltage, as monitored by FtsZ localization to the cell septum. The EPM analogs had little effect on bacterial growth in standard Mueller Hinton Broth. However, under broth conditions that mimic the micro-environment of the macrophage phagosome, acrAB is required for growth, the EPM analogs are bacteriostatic, and increase the potency of antibiotics. These data suggest that under macrophage-like conditions the EPM analogs prevent the export of a toxic bacterial metabolite(s) through AcrAB-TolC. Thus, compounds that bind AcrB could disrupt infection by specifically interfering with the export of bacterial toxic metabolites, host defense factors, and/or antibiotics.
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  • 文章类型: Journal Article
    目的:SAFIRE分级量表是一种新颖的,可计算量表可预测动脉瘤性蛛网膜下腔出血(aSAH)患者的急性随访结果。然而,该量表在长期随访中也可能具有预后意义,并有助于指导进一步的治疗.
    方法:对所有参加Barrow破裂动脉瘤试验(BRAT)患者的记录进行回顾性分析,患者被分配SAFIRE等级。分析了每个SAFIRE年级的aSAH后1年和6年的结果,不良结局定义为改良的Rankin量表评分>2。在1年和6年的随访中,对SAFIRE分级高(IV或V)的患者进行了单变量分析,以了解不良预后的几率。
    结果:共405例确诊aSAH患者纳入BRAT进行分析;357例患者进行了1年随访,333例患者有6年的随访数据.一般来说,随着SAFIRE等级的提高,结果不佳的患者比例也是如此。在1年的随访中,18%(17/93)的Ⅰ级患者,22%(20/92)的Ⅱ级患者,32%(26/80)的Ⅲ级患者,43%(38/88)的Ⅳ级患者,发现75%(3/4)的V级患者结局不佳。在6年的随访中,29%(23/79)的Ⅰ级患者,24%(21/89)的II级患者,38%(29/77)的Ⅲ级患者,60%(50/84)的IV级患者,发现100%(4/4)的V级患者结局不佳。单因素分析显示,SAFIRE等级IV或V与1年(OR2.5,95%CI1.5-4.2;p<0.001)和6年(OR3.7,95%CI2.2-6.2;p<0.001)随访时不良结局的风险显着增加。
    结论:高SAFIRE评分与后期随访恢复不良的风险增加相关。
    The SAFIRE grading scale is a novel, computable scale that predicts the outcome of aneurysmal subarachnoid hemorrhage (aSAH) patients in acute follow-up. However, this scale also may have prognostic significance in long-term follow-up and help guide further management.
    The records of all patients enrolled in the Barrow Ruptured Aneurysm Trial (BRAT) were retrospectively reviewed, and the patients were assigned SAFIRE grades. Outcomes at 1 year and 6 years post-aSAH were analyzed for each SAFIRE grade level, with a poor outcome defined as a modified Rankin Scale score > 2. Univariate analysis was performed for patients with a high SAFIRE grade (IV or V) for odds of poor outcome at the 1- and 6-year follow-ups.
    A total of 405 patients with confirmed aSAH enrolled in the BRAT were analyzed; 357 patients had 1-year follow-up, and 333 patients had 6-year follow-up data available. Generally, as the SAFIRE grade increased, so did the proportion of patients with poor outcomes. At the 1-year follow-up, 18% (17/93) of grade I patients, 22% (20/92) of grade II patients, 32% (26/80) of grade III patients, 43% (38/88) of grade IV patients, and 75% (3/4) of grade V patients were found to have poor outcomes. At the 6-year follow-up, 29% (23/79) of grade I patients, 24% (21/89) of grade II patients, 38% (29/77) of grade III patients, 60% (50/84) of grade IV patients, and 100% (4/4) of grade V patients were found to have poor outcomes. Univariate analysis showed that a SAFIRE grade of IV or V was associated with a significantly increased risk of a poor outcome at both the 1-year (OR 2.5, 95% CI 1.5-4.2; p < 0.001) and 6-year (OR 3.7, 95% CI 2.2-6.2; p < 0.001) follow-ups.
    High SAFIRE grades are associated with an increased risk of a poor recovery at late follow-up.
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  • 文章类型: Journal Article
    OBJECTIVE: We hypothesized that cerebral CT angiogram performed using third-generation reconstruction algorithm and lower contrast dose-low-kVp technique (LD-CTA) will provide better image quality when compared with regular contrast dose CTA at 120 kVp using a sinogram-affirmed iterative reconstruction algorithm (ND-CTA).
    METHODS: Retrospective imaging review of 100 consecutive patients (50 each in LD- and ND-CTA groups). Two readers independently assessed the subjective image quality across multiple vascular segments on a Likert-like scale. Differences in contrast dose, CT dose index (CTDI), and dose length product (DLP) were compared using Mann-Whitney U test. Fisher\'s exact test was used to compare subjective image quality. Similarly, contrast- and signal-to-noise ratios (CNR and SNR) were compared in the mid-M1 MCA vessels bilaterally and the mid-basilar artery using Mann-Whitney U test. Interclass correlation coefficient (ICC) was calculated for the SNR/CNR values.
    RESULTS: Both observers showed excellent correlation in subjective image quality (mean percentage agreement of 95.2% for group 1 versus 89.2% for group 2). LD-CTA group showed better SNR and CNR (p < 0.0001) for both MCA vessels and the mid-basilar artery. Interclass correlation coefficient showed moderate correlation (0.51-0.63) between readers. LD-CTA group also used lower contrast (49 cc versus 97 cc in ND-CTA) and had lower radiation exposure (DLP/CTDI for both groups 268.3/80.7 vs 519.5/36.08, both < 0.0001).
    CONCLUSIONS: Next-generation reconstruction algorithm and low-kV scanning significantly improved image quality on cerebral CTA images despite lower contrast dose and, in addition, have lower radiation exposure.
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  • 文章类型: Comparative Study
    OBJECTIVE: We compared and analyzed the detectability performance pertaining to an abdominal phantom including a region of interest (ROI) according to a computed tomography (CT) reconstruction algorithm.
    METHODS: Three types of reconstruction algorithms (FBP, SAFIRE, and ADMIRE) were used to evaluate the detectability performance using the abdominal phantom (phantom size: 25 × 18 × 28 cm3 ). The vendor default settings for routine multi-detector computed tomography abdominal scans were used. As the quantitative evaluation method, the contrast-to-noise ratio (CNR), difference in coefficient of variation (COV) with the normalization based on the FBP data, and the noise power spectrum (NPS) were measured.
    RESULTS: The characteristic of the ADMIRE-3 reconstructed image was higher than those of the FBP and SAFIRE-3 reconstructed images. The CNR values of the SAFIRE and ADMIRE images were much higher than the corresponding values of the FBP images. The difference in COV values for the ADMIRE images was ~1.2 times lower than the corresponding values of the SAFIRE images.
    CONCLUSIONS: The comparative analysis of the abdominal phantom low-contrast resolution differences for each CT exposure parameters showed that ADMIRE demonstrated better results than SAFIRE and FBP in terms of contrast, CNR, COV difference, and 1D NPS. This indicates that ADMIRE can provide a clearer observation even with the same number of contrast objects as compared to SAFIRE and FBP owing to its better contrast resolution in the central part of the contrast hole at low kV.
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  • 文章类型: Journal Article
    目的:多层螺旋CT(MSCT)已用于小肠疾病的诊断。然而,辐射剂量是个大问题。这项研究旨在研究与MSCT相比,CAREDose4D结合正弦图确认迭代重建(SAFIRE)是否可以在较低剂量下提供更好的图像质量用于小肠疾病成像。
    方法:通过使用SOMATOMDefinitionFlash双源螺旋CT扫描普通水模来评估SAFIRE的降噪能力。获得了239例患者的X线摄影各个阶段的CT图像。根据不同的管电压和电流或图像重组方法将患者分为A组和B组。使用滤波反投影(FBP)和SAFIRE(S1-S5)重构图像。对比度噪声比(CNR),CT剂量指数(CTDI),主观评分,和客观评分进行比较,以获得CT不同阶段的最佳图像和重建参数。
    结果:通过FBP和SAFIRE获得了26种管电压和电流的重构模式。使用CAREDose4D结合SAFIRE(S4-S5)的平均辐射剂量与普通CT扫描下MSCT小肠CT肠造影患者的管电压为100kV和管电流为131mAs的情况相比降低了约74.85%,动脉阶段,小肠,和门静脉期。A组和B组在各阶段的客观和主观评分均有显著差异。
    结论:显示CAREDose4D和SAFIRE的组合可降低辐射剂量,同时保持图像质量。
    OBJECTIVE: Multislice computed tomography (MSCT) has been used for diagnosis of small intestinal diseases. However, the radiation dose is a big problem. This study was to investigate whether CARE Dose 4D combined with sinogram-affirmed iterative reconstruction (SAFIRE) can provide better image quality at a lower dose for imaging small intestinal diseases compared to MSCT.
    METHODS: The noise reduction ability of SAFIRE was assessed by scanning the plain water mold using SOMATOM Definition Flash double-source spiral CT. CT images at each stage of radiography for 239 patients were obtained. The patients were divided into groups A and B were based on different tube voltage and current or the image recombination methods. The images were restructured using with filtered back projection (FBP) and SAFIRE (S1-S5). The contrast noise ratio (CNR), CT Dose index (CTDI), subjective scoring, and objective scoring were compared to obtain the best image and reformation parameters at different stages of CT.
    RESULTS: Twenty-six restructuring patterns of tube voltage and current were obtained by FBP and SAFIRE. The average radiation dose using CARE Dose 4D combined with SAFIRE (S4-S5) reduced approximately 74.85% compared to conditions where the tube voltage of 100 kV and tube current of 131 mAs for patients with MSCT small intestinal CT enterography at plain CT scan, arterial stage, small intestine, and portal venous phase. The objective and subjective scoring were all significantly different among groups A and B at each stage.
    CONCLUSIONS: Combination of CARE Dose 4D and SAFIRE is shown to decrease the radiation dose while maintaining image quality.
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  • 文章类型: Journal Article
    OBJECTIVE: Aim of the study was the comparison of high-pitch dual-source CTA of the aorta acquired with different tube currents and methods of image reconstruction in patients with Marfan Disease (MFS).
    BACKGROUND: Patients with MFS receive repeatedly CT examinations of the entire aorta what leads to high cumulative lifetime radiation doses. Routine clinical use of low-kV-protocols in combination with iterative reconstruction for imaging of the aorta is still limited although this approach may be of great benefit for patients in need of serial follow-up scans.
    METHODS: 106 patients with MFS received CTA of the entire aorta in a 2nd generation dual-source Flash-CT at 120, 100 or 80 kV. 120 kV images were reconstructed with FBP, low-kV images with an IR algorithm (SAFIRE) at different noise reduction levels. CTDIvol, DLP and effective dose were analyzed. Quantitative image analysis included comparison of SNR, CNR and Noise levels. For qualitative analysis, two blinded readers assessed noise, contour delineation, contrast, overall image quality and diagnostic confidence.
    RESULTS: Effective dose was 9.4 (±1.5) mSv for 120 kV, 4.2 (±1.1) mSv for 100 kV and 1.9 (±0.42) mSv for 80 kV. 100 kV images showed the highest SNR and CNR values, followed by 80 kV and 120 kV. Qualitative image analysis showed the lowest scores for all evaluated aspects at 80 kV. Overall image quality and diagnostic confidence was excellent at all kV strengths.
    CONCLUSIONS: In MFS patients low-kV CT protocols with IR allow for CTA of the entire aorta in excellent image quality and diagnostic confidence with a dose reduction of up to 80% compared to 120 kV. For baseline CT, we recommend 100 kV, for follow-up CT scans 80 kV as tube voltage.
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  • 文章类型: Journal Article
    OBJECTIVE: To prospectively compare image quality of cranial computed tomography (CCT) examinations with varying slice widths using traditional filtered back projection (FBP) versus sinogram-affirmed iterative image reconstruction (SAFIRE).
    METHODS: 29 consecutive patients (14 men, mean age: 72 ± 17 years) referred for a total of 40 CCT studies were prospectively included. Each CCT raw data set was reconstructed with FBP and SAFIRE at 5 slice widths (1-5mm; 1mm increments). Objective image quality was assessed in three predefined regions of the brain (white matter, thalamus, cerebellum) using identical regions of interest (ROIs). Subjective image quality was assessed by 2 experienced radiologists. Objective and subjective image quality parameters were statistically compared between FBP and SAFIRE reconstructions.
    RESULTS: SAFIRE reconstructions resulted in mean noise reductions of 43.8% in the white matter, 45.6% in the thalamus and 42.0% in the cerebellum (p<0.01) compared to FBP on non contrast-enhanced 1mm slice width images. Corresponding mean noise reductions on 1mm contrast-enhanced studies were 45.7%, 47.3%, and 45.0% in the white matter, thalamus, and cerebellum, respectively (p<0.01). There was no significant difference in mean attenuation of any region or slice width between the two reconstruction methods (all p>0.05). Subjective image quality of IR images was mostly rated higher than that of the FBP images.
    CONCLUSIONS: Compared to FBP, SAFIRE provides significant reductions in image noise while increasing subjective image in CCT, particularly when thinner slices are used. Therefore, SAFIRE may allow utilization of thinner slices in CCT, potentially reducing partial volume effects and improving diagnostic accuracy.
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  • 文章类型: Journal Article
    BACKGROUND: Different iterative reconstruction (IR) techniques compensate increased noise from lower tube current-time product settings, yet the differences between IR settings remain unclear.
    OBJECTIVE: Aim of this study was to test whether different IR settings have a clinically relevant influence on image quality and on the diagnostic accuracy of low-dose CT angiography in patients with a stent.
    METHODS: Forty-two patients with 73 coronary stents were prospectively enrolled. Data were acquired with dual-source CT, and images were reconstructed with standard filtered back projection (FBP) and raw data-based IR with different settings (I3, I4, I5). Quantitative parameters, including CT-attenuation, noise, signal-to-noise ratio, contrast-to-noise ratio, as well as the presence of in-stent stenosis > 50% were determined. All patients had invasive angiography as reference standard.
    RESULTS: Mean effective dose was 0.32 ± 0.02 mSv. Image noise decreased significantly compared with FBP (I3 = 29%; I4 = 38% and I5 = 45%), whereas signal-to-noise and contrast-to-noise ratios increased significantly (all IR settings P < .01). Subjective image quality was superior with all IR settings (P < .01). FBP sensitivity, specificity, positive predictive value, and negative predictive value were 83%, 71%, 36%, and 96% per stent compared with 100%, 76%, 44%, and 100%, respectively, in IR reconstructions independent of the IR setting applied.
    CONCLUSIONS: In low-dose coronary CT angiography, higher IR settings significantly improved subjective and objective image quality but had no effect on accuracy.
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